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KJC3_004257-T1, KJC3_004257-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_004257-T1
Unique NameKJC3_004257-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch3:4349864..4350819+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_004257-T1 ID=KJC3_004257-T1|Name=KJC3_004257-T1|organism=Aspergillus niger KJC3|type=mRNA|length=956bp|location=Sequence derived from alignment at ch3:4349864..4350819+ (Aspergillus niger KJC3)
ATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATT
CAAGTATGTCCCGCCTGCAGCATAGCTAGCTTTCGGCTTTCCTTAATGTG
CGGCTAATCGAATTGCAGGCTGGTTTTCTTGGGCGAGCAGAGTGGTACGG
ATATCTTCTGCGACGATACTCCAATCATTGGCGCCACCCGGTCTCTGACA
TCTGCCTTACAGTTGGAAAAACCTCATTGATCACACGGTTCATGTACGAT
TCATTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAA
GGTATACTACGCCTAGTCGACTGCTTGTGCCCTGCATTAGCAGGCCCTCA
CCGAGCCATTCTCACACGGTCTCATGCTTTCCAATATGCTCGCGCTGCTG
CAAAAAGCTAATTTGCATCGCTCGTCTTAGACTATGTACCTGGAAGACAG
AACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGAT
CTTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTAC
GATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGGATCGATGA
TGTACGTGGGGAACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACA
AGACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAG
GAGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGG
CCACAATGTGAAACAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCA
TGGAGGGTGAAGCCAACCGGGGAGACAACCAGAGTACGTTATCCTTTCCC
CGCCCATGGCTCGAGTTACACGGGATGAGTACTGACAACTCTTACAGTGA
TCGATGTCAACATTACCCCGAAAGAGACCACGACCAACGACGGATGCGCC
TGCTAG
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Coding sequence (CDS) from alignment at ch3:4349864..4350819+

>KJC3_004257-T1 ID=KJC3_004257-T1|Name=KJC3_004257-T1|organism=Aspergillus niger KJC3|type=CDS|length=3150bp|location=Sequence derived from alignment at ch3:4349864..4350819+ (Aspergillus niger KJC3)
ATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATT
CAAGCTGGTTTTCTTGGGCGAGCAGAGTGTTGGAAAAACCTCATTGATCA
CACGGTTCATGTACGATTCATTCGACAACACGTACCAAGCTACCATTGGA
ATCGATTTCTTGTCAAAGACTATGTACCTGGAAGACAGAACTGTGCGCCT
TCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGATCTTTGATTCCTT
CCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTACGATATCTCCAAC
GCCAAGTCTTTCCAGAACACACGCAAATGGATCGATGATGTACGTGGGGA
ACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACAAGACCGATCTGA
ACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAGGAGGCGAAGAAG
AACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGGCCACAATGTGAA
ACAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCATGGAGGGTGAAG
CCAACCGGGGAGACAACCAGATGATCGATGTCAACATTACCCCGAAAGAG
ACCACGACCAACGACGGATGCGCCTGCTAGATGGCATCCACCTCCGGGGT
AGGGTCGTATTCGAACCCTCTGAAGAAATTCAAGCTGGTTTTCTTGGGCG
AGCAGAGTGTTGGAAAAACCTCATTGATCACACGGTTCATGTACGATTCA
TTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAAGAC
TATGTACCTGGAAGACAGAACTGTGCGCCTTCAACTTTGGGACACAGCTG
GTCAAGAACGTTTCCGATCTTTGATTCCTTCCTACATCCGTGACTCCAGT
GTCGCTGTGGTGGTCTACGATATCTCCAACGCCAAGTCTTTCCAGAACAC
ACGCAAATGGATCGATGATGTACGTGGGGAACGCGGTAACGATGTCATCA
TCGTCCTGGTGGGCAACAAGACCGATCTGAACGACAAGCGCGAGGTCACG
ACGGCGCAGGGCGAGGAGGAGGCGAAGAAGAACGGCTTGATGTTCATTGA
GACCAGTGCTAAAGTCGGCCACAATGTGAAACAGCTTTTCAGGAGAATTG
CGCAAGCCCTACCGGGCATGGAGGGTGAAGCCAACCGGGGAGACAACCAG
ATGATCGATGTCAACATTACCCCGAAAGAGACCACGACCAACGACGGATG
CGCCTGCTAGATGGCATCCACCTCCGGGGTAGGGTCGTATTCGAACCCTC
TGAAGAAATTCAAGCTGGTTTTCTTGGGCGAGCAGAGTGTTGGAAAAACC
TCATTGATCACACGGTTCATGTACGATTCATTCGACAACACGTACCAAGC
TACCATTGGAATCGATTTCTTGTCAAAGACTATGTACCTGGAAGACAGAA
CTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACGTTTCCGATCT
TTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGGTGGTCTACGA
TATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGGATCGATGATG
TACGTGGGGAACGCGGTAACGATGTCATCATCGTCCTGGTGGGCAACAAG
ACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGGGCGAGGAGGA
GGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCTAAAGTCGGCC
ACAATGTGAAACAGCTTTTCAGGAGAATTGCGCAAGCCCTACCGGGCATG
GAGGGTGAAGCCAACCGGGGAGACAACCAGATGATCGATGTCAACATTAC
CCCGAAAGAGACCACGACCAACGACGGATGCGCCTGCTAGATGGCATCCA
CCTCCGGGGTAGGGTCGTATTCGAACCCTCTGAAGAAATTCAAGCTGGTT
TTCTTGGGCGAGCAGAGTGTTGGAAAAACCTCATTGATCACACGGTTCAT
GTACGATTCATTCGACAACACGTACCAAGCTACCATTGGAATCGATTTCT
TGTCAAAGACTATGTACCTGGAAGACAGAACTGTGCGCCTTCAACTTTGG
GACACAGCTGGTCAAGAACGTTTCCGATCTTTGATTCCTTCCTACATCCG
TGACTCCAGTGTCGCTGTGGTGGTCTACGATATCTCCAACGCCAAGTCTT
TCCAGAACACACGCAAATGGATCGATGATGTACGTGGGGAACGCGGTAAC
GATGTCATCATCGTCCTGGTGGGCAACAAGACCGATCTGAACGACAAGCG
CGAGGTCACGACGGCGCAGGGCGAGGAGGAGGCGAAGAAGAACGGCTTGA
TGTTCATTGAGACCAGTGCTAAAGTCGGCCACAATGTGAAACAGCTTTTC
AGGAGAATTGCGCAAGCCCTACCGGGCATGGAGGGTGAAGCCAACCGGGG
AGACAACCAGATGATCGATGTCAACATTACCCCGAAAGAGACCACGACCA
ACGACGGATGCGCCTGCTAGATGGCATCCACCTCCGGGGTAGGGTCGTAT
TCGAACCCTCTGAAGAAATTCAAGCTGGTTTTCTTGGGCGAGCAGAGTGT
TGGAAAAACCTCATTGATCACACGGTTCATGTACGATTCATTCGACAACA
CGTACCAAGCTACCATTGGAATCGATTTCTTGTCAAAGACTATGTACCTG
GAAGACAGAACTGTGCGCCTTCAACTTTGGGACACAGCTGGTCAAGAACG
TTTCCGATCTTTGATTCCTTCCTACATCCGTGACTCCAGTGTCGCTGTGG
TGGTCTACGATATCTCCAACGCCAAGTCTTTCCAGAACACACGCAAATGG
ATCGATGATGTACGTGGGGAACGCGGTAACGATGTCATCATCGTCCTGGT
GGGCAACAAGACCGATCTGAACGACAAGCGCGAGGTCACGACGGCGCAGG
GCGAGGAGGAGGCGAAGAAGAACGGCTTGATGTTCATTGAGACCAGTGCT
AAAGTCGGCCACAATGTGAAACAGCTTTTCAGGAGAATTGCGCAAGCCCT
ACCGGGCATGGAGGGTGAAGCCAACCGGGGAGACAACCAGATGATCGATG
TCAACATTACCCCGAAAGAGACCACGACCAACGACGGATGCGCCTGCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAB6AKJC3_004257Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004257-T1KJC3_004257-T1-proteinAspergillus niger KJC3polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004257-T1.exon1KJC3_004257-T1.exon1Aspergillus niger KJC3exon
KJC3_004257-T1.exon2KJC3_004257-T1.exon2Aspergillus niger KJC3exon
KJC3_004257-T1.exon3KJC3_004257-T1.exon3Aspergillus niger KJC3exon
KJC3_004257-T1.exon4KJC3_004257-T1.exon4Aspergillus niger KJC3exon
KJC3_004257-T1.exon5KJC3_004257-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_004257-T1.cdsKJC3_004257-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
NoteBUSCO:EOG09264JHE
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR001806
DBxrefInterPro:IPR005225
DBxrefPFAM:PF09439
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF01926
DBxrefPFAM:PF04670
DBxrefPFAM:PF00025
ProductRas- protein Rab-6A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch3supercontigch3:4349864..4350819 +
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