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KJC3_005092-T1, KJC3_005092-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005092-T1
Unique NameKJC3_005092-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1544962..1546396-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005092-T1 ID=KJC3_005092-T1|Name=KJC3_005092-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1435bp|location=Sequence derived from alignment at ch4:1544962..1546396- (Aspergillus niger KJC3)
GATCGAGGAGTTGTTTGTGGCTTCTTACCTCATTCATCAGAAATCTTCTC
CTACTTCTTCTGATCGCCACTTTCGGGCTTACAGACTCTAAACAACTAGC
CCAACATGAGGTGCGTGCCCCGGCGTTTTGCCTCTGCTCATCCCGGGAGA
AATTTATCCAGCGGTAAGGACTTGCGGCTGACCTACCTGACAGAGTTGAA
ACGTGCCACTTTTGCTCCAGGCCTGTTTACCCTAGCAAGGGTATCCAGTT
TGTTAGAAATGACGCCAAGGCATTCCGGTTTTGCAGAAGCAAATGATAAG
TTCTAGCCCCGCCCCGGTCTTATCAGGTTTAAGCTAACTCCTACCACCCA
TCAGAACTTCAAGGCTAAGCGCCAACCGAGACGTGTGAAGTGGACCAAGG
CCGGTCGCGCTGCCAAGGGCAAGGAGATGATTGTCGACTCGTCGCTGGTG
CTGTCCCAGTTCGCCAAGAAGAGAAACGTCCCCGTCAAGTACGACAGAAA
CCTGGTTGCGGCGACTATCAAGGCGATGGAGAGAGTGGAGGAGATCCGGC
AGCGCAGGGAGCGTGTGTTCACGAAGCGTCGTTTGGCAGGCAAGCTTGCG
CGGGACCGCAAGCGCGAGGCGGATCGCAAGGTGGTCATGGAGGGCGAGCA
CCTCATCCGCAAGGAGCTCCGCGAGCGGGAAGAAGGACAGCCGTTGGTGG
CCGAGACTGCCAAGGCAAGCAGACTGCACGGCGAGGAGCGTCTCAGACAG
AAGAAGAAGACCAGAATGTTGGTGGATGGAACTACTCAGGAGGAGATGGA
TGTCGATTAAAGGGCTATGCGTTTCTTACGTTTCTTTCTCTCCGGCTATC
TAGTCGGGTTCGATACCTTGAGGTTATGATGGAGTTGGGTTTGTTCTGTT
GTTTCAAGCTTTTCCTATCCAAAAGTATCCAGTGGTCTCTGGGATGAACT
TTCATGTCCAAATTGTTGCTTTCTTTGCAGGTATATTGACTTAATCATAC
AAAGACGTGCTCTATAGAATCACCCGTTGTGAAGTGCTAGTGGATTGGAG
GACGGAACTCATTGGTTCTCTAGCCACAGGGTGTACCAGTAGTACTTCTC
TTGCGCCTTTCCAGCAAGAGCACTCTAACTTGCAGTAGGACCCTTCTATG
GCATCACTACTTTAGTAGGCTTTCTAGTGTGTAATCTCAGCATTCCCCAC
CAGTGCTCCTACCGTCATCACCACCACCACCCGCTTCCAGCATCTACCCT
ATACATGCCGTAGACCACAGACAGATAGTGAAGAGTGATATCATCAATAG
ATCTCAACCTGATTGTGCAATCTTTCCAAGCACAGCCTGGATTACTGATG
CTTGAGGTCCACCGACTTCCTTTGGGTTCTGGCCGGCGGCGGCGGTGGGC
AGATGAGTCAGCCGGCGAACGGAAGGACGAAAAAC
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Coding sequence (CDS) from alignment at ch4:1544962..1546396-

>KJC3_005092-T1 ID=KJC3_005092-T1|Name=KJC3_005092-T1|organism=Aspergillus niger KJC3|type=CDS|length=1710bp|location=Sequence derived from alignment at ch4:1544962..1546396- (Aspergillus niger KJC3)
CCATCAGAACTTCAAGGCTAAGCGCCAACCGAGACGTGTGAAGTGGACCA
AGGCCGGTCGCGCTGCCAAGGGCAAGGAGATGATTGTCGACTCGTCGCTG
GTGCTGTCCCAGTTCGCCAAGAAGAGAAACGTCCCCGTCAAGTACGACAG
AAACCTGGTTGCGGCGACTATCAAGGCGATGGAGAGAGTGGAGGAGATCC
GGCAGCGCAGGGAGCGTGTGTTCACGAAGCGTCGTTTGGCAGGCAAGCTT
GCGCGGGACCGCAAGCGCGAGGCGGATCGCAAGGTGGTCATGGAGGGCGA
GCACCTCATCCGCAAGGAGCTCCGCGAGCGGGAAGAAGGACAGCCGTTGG
TGGCCGAGACTGCCAAGGCAAGCAGACTGCACGGCGAGGAGCGTCTCAGA
CAGAAGAAGAAGACCAGAATGTTGGTGGATGGAACTACTCAGGAGGAGAT
GGATGTCGATTAAAGTTGAAACGTGCCACTTTTGCTCCAGGCCTGTTTAC
CCTAGCAAGGGTATCCAGTTTGTTAGAAATGACGCCAAGGCATTCCGGTT
TTGCAGAAGCAAATGATGAGCCATCAGAACTTCAAGGCTAAGCGCCAACC
GAGACGTGTGAAGTGGACCAAGGCCGGTCGCGCTGCCAAGGGCAAGGAGA
TGATTGTCGACTCGTCGCTGGTGCTGTCCCAGTTCGCCAAGAAGAGAAAC
GTCCCCGTCAAGTACGACAGAAACCTGGTTGCGGCGACTATCAAGGCGAT
GGAGAGAGTGGAGGAGATCCGGCAGCGCAGGGAGCGTGTGTTCACGAAGC
GTCGTTTGGCAGGCAAGCTTGCGCGGGACCGCAAGCGCGAGGCGGATCGC
AAGGTGGTCATGGAGGGCGAGCACCTCATCCGCAAGGAGCTCCGCGAGCG
GGAAGAAGGACAGCCGTTGGTGGCCGAGACTGCCAAGGCAAGCAGACTGC
ACGGCGAGGAGCGTCTCAGACAGAAGAAGAAGACCAGAATGTTGGTGGAT
GGAACTACTCAGGAGGAGATGGATGTCGATTAAAGTTGAAACGTGCCACT
TTTGCTCCAGGCCTGTTTACCCTAGCAAGGGTATCCAGTTTGTTAGAAAT
GACGCCAAGGCATTCCGGTTTTGCAGAAGCAAATGATGAGCCATCAGAAC
TTCAAGGCTAAGCGCCAACCGAGACGTGTGAAGTGGACCAAGGCCGGTCG
CGCTGCCAAGGGCAAGGAGATGATTGTCGACTCGTCGCTGGTGCTGTCCC
AGTTCGCCAAGAAGAGAAACGTCCCCGTCAAGTACGACAGAAACCTGGTT
GCGGCGACTATCAAGGCGATGGAGAGAGTGGAGGAGATCCGGCAGCGCAG
GGAGCGTGTGTTCACGAAGCGTCGTTTGGCAGGCAAGCTTGCGCGGGACC
GCAAGCGCGAGGCGGATCGCAAGGTGGTCATGGAGGGCGAGCACCTCATC
CGCAAGGAGCTCCGCGAGCGGGAAGAAGGACAGCCGTTGGTGGCCGAGAC
TGCCAAGGCAAGCAGACTGCACGGCGAGGAGCGTCTCAGACAGAAGAAGA
AGACCAGAATGTTGGTGGATGGAACTACTCAGGAGGAGATGGATGTCGAT
TAAAGTTGAAACGTGCCACTTTTGCTCCAGGCCTGTTTACCCTAGCAAGG
GTATCCAGTTTGTTAGAAATGACGCCAAGGCATTCCGGTTTTGCAGAAGC
AAATGATGAG
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RLP24KJC3_005092Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005092-T1KJC3_005092-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005092-T1.cdsKJC3_005092-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005092-T1.utr3p1KJC3_005092-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005092-T1.exon3KJC3_005092-T1.exon3Aspergillus niger KJC3exon
KJC3_005092-T1.exon2KJC3_005092-T1.exon2Aspergillus niger KJC3exon
KJC3_005092-T1.exon1KJC3_005092-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005092-T1.utr5p1KJC3_005092-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR038630
DBxrefInterPro:IPR000988
DBxrefInterPro:IPR011017
DBxrefPFAM:PF01246
ProductATPase-activating ribosome biosynthesis protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1544962..1546396 -
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