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KJC3_005161-T1, KJC3_005161-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005161-T1
Unique NameKJC3_005161-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:1759612..1761002-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005161-T1 ID=KJC3_005161-T1|Name=KJC3_005161-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1391bp|location=Sequence derived from alignment at ch4:1759612..1761002- (Aspergillus niger KJC3)
CCACGACGCACACTAAGCGAGAAGCAAATCGAAACCCGCGACCAAGTCTC
TGAATCCGACGACACCCCCCGTTTCGACCGTCCGTCCGTCCCCCTTCCCT
TGTCGCCCAGTTTTTATCCGACAACCCTAGATACACAGCCAAGATGTCTG
CGAGAGGGTGAGTTGTTTCTTTTCGTTGTTGGAGACGTGTGGGAAAGCGA
GACAGAGAAAGAGAGGAAGAAATCCGGACCGGAGATATTGAAATGCTGCG
GGAAAGAGATGAGATGAGAAGGGATGGAATGGAATATTCGCTGGCTGGAG
ATTTCGACTCGAAATTACGGTTGGATTGAGTTCGATATGCGACATACGAG
ATTGAAAGAGGAGGGTTGAATGAAGGTCCGGGAAAGAGATGGATAAATCT
ATGTGGATGGGAATTTGATATACATGGGATACGAGGGAATTAAAGCTAAC
AAAATATCTATAACAGACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATG
ACCCTCGGTCTGCCTTGGTATGTCAACTCCAAATTTCTTCCGTTCAAATC
CATACACCCATCTTCGAGAGAATTATGCGATTCGATACAATTAAATCAAA
TCAAATCGATCTCAATTATTCTTCAATCGAAACATACACCCACCACACAC
AAGCCACCTCGATATCTTCCCACCCAACACCCATGATTTCACAACCTACA
ACCGACACGAACACATGAAGAAAAAAATGATGAACACAGCTAATTAATCT
TTTTGCCTACAGCGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCC
GCAACCTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGT
CTCCCCGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGG
AAAGCCTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGA
GCAAGCCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGAGGACAAC
GCTGGTGTTGTACGTACCCTTGTCCCCGAATTCCAATTCCACTCTTTATA
TCAAGTGGATGAGGGTCATATGCGACAATAATGATGGAAATACTAATGAT
CGGTATAGATCGTCAACGCCAAGGGTGAGATGAAGGGTTCCGCTATCACT
GGTCCCGTTGGTAAGGAGGCTGCTGAGCTTTGGCCTGTAAGTTCTCCCTA
GCATACCTCAACGGGTATATATCAATGGGGAGATTCATATGCTAATTGTG
TGTCCAGCGTATTGCCTCCAACTCCGGTGTTGTCATGTAAAATGTGTTAA
ACCTGGAATTTGGAGCAAGAAGAGAAAAAAAAAAAGCGATACCAAGGGCT
TCTAGAACAAAGGGGGTGGTACCGGTTTTTTTTTTTAGTAT
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Coding sequence (CDS) from alignment at ch4:1759612..1761002-

>KJC3_005161-T1 ID=KJC3_005161-T1|Name=KJC3_005161-T1|organism=Aspergillus niger KJC3|type=CDS|length=1152bp|location=Sequence derived from alignment at ch4:1759612..1761002- (Aspergillus niger KJC3)
CGGCGCCGTGCTCAACTGCTGCGACAACTCCGGTGCCCGCAACCTGTACA
TCATCTCCGTCAAGGGTATCGGTGCTCGCCTGAACCGTCTCCCCGCTGCC
GGTGTCGGTGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCCTGAGCT
CCGTAAGAAGGTCATGCCCGCTGTTGTTGTCCGTCAGAGCAAGCCCTGGA
GACGCCCCGACGGTATCTACCTCTACTTCGAGGACAACGCTGGTGTTGTA
CGTACCCTTGTCCCCGAATTCCAATTCCACTCTTTATATCAAGTGGATGA
GGGTCATATGCGACAATAAACGCGGTGGTGCCTCCGGCAACAAGCTCAAG
ATGACCCTCGGTCTGCCTTGATGTCTGCGAGAGGCGGCGCCGTGCTCAAC
TGCTGCGACAACTCCGGTGCCCGCAACCTGTACATCATCTCCGTCAAGGG
TATCGGTGCTCGCCTGAACCGTCTCCCCGCTGCCGGTGTCGGTGACATGG
TCATGGCCACCGTCAAGAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATG
CCCGCTGTTGTTGTCCGTCAGAGCAAGCCCTGGAGACGCCCCGACGGTAT
CTACCTCTACTTCGAGGACAACGCTGGTGTTGTACGTACCCTTGTCCCCG
AATTCCAATTCCACTCTTTATATCAAGTGGATGAGGGTCATATGCGACAA
TAAACGCGGTGGTGCCTCCGGCAACAAGCTCAAGATGACCCTCGGTCTGC
CTTGATGTCTGCGAGAGGCGGCGCCGTGCTCAACTGCTGCGACAACTCCG
GTGCCCGCAACCTGTACATCATCTCCGTCAAGGGTATCGGTGCTCGCCTG
AACCGTCTCCCCGCTGCCGGTGTCGGTGACATGGTCATGGCCACCGTCAA
GAAGGGAAAGCCTGAGCTCCGTAAGAAGGTCATGCCCGCTGTTGTTGTCC
GTCAGAGCAAGCCCTGGAGACGCCCCGACGGTATCTACCTCTACTTCGAG
GACAACGCTGGTGTTGTACGTACCCTTGTCCCCGAATTCCAATTCCACTC
TTTATATCAAGTGGATGAGGGTCATATGCGACAATAAACGCGGTGGTGCC
TCCGGCAACAAGCTCAAGATGACCCTCGGTCTGCCTTGATGTCTGCGAGA
GG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23KJC3_005161Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005161-T1KJC3_005161-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005161-T1.cdsKJC3_005161-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005161-T1.utr3p1KJC3_005161-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005161-T1.exon3KJC3_005161-T1.exon3Aspergillus niger KJC3exon
KJC3_005161-T1.exon2KJC3_005161-T1.exon2Aspergillus niger KJC3exon
KJC3_005161-T1.exon1KJC3_005161-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005161-T1.utr5p1KJC3_005161-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019972
DBxrefInterPro:IPR036853
DBxrefInterPro:IPR000218
DBxrefPFAM:PF00238
Product60S ribosomal protein L23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:1759612..1761002 -
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