|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:1838505..1840557+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005184-T1 ID=KJC3_005184-T1|Name=KJC3_005184-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2053bp|location=Sequence derived from alignment at ch4:1838505..1840557+ (Aspergillus niger KJC3)
CGTCCACTGCTGCTTGCCTACCTGTCCTTGTTCCCGCAGGTCTTTCCTGT
TACGGTTTCAATTGATTCTGCGTTAGATTCTCCATCTGTGCTGTGTGCGC
CATGGATTTCTCCAACCTCAAAGAACAGGTCAGCAACCTGACCTTGTATG
ATCTCAAGGCGGGAGTCCGCAAGGTCCAGAATGGTACGTCCCCGCGGTGA
CCCCAGAACGCTATTCCGTCATCCTGGATGGCCTCGGGTCTTGCTCCCCT
GATCTAGGCGATTCACTGACTCCTATAGCGGTCATGAACTATACCGAGAT
GGAGGCCAAGGTCCGTTCCTACTCTCCCGCCAGTTCCGTGCCGCCACGAG
TCCCGGGCCTCCGCACCCCGTGTGGTCGTATCCCTTGAAGCACAACACTC
ACGTTGGACAGGTCCGAGAAGCTACAAACAATGAACCTTGGGGTGCCTCG
AACACACTCATGCATGAGATCGCCAGTGGAACCCATAGCTAGTCAGTCTT
CCCGCCCCCGTCGCATGGGCTAGCGAGGTTTCCCCTGGAGTACTAATGAG
GTGTCGCAACATGCAGTCAATTGCTTAACGAGATCATGCCTATGATTTAC
AAGCGCTTCACAGACAAGACCTCGGAGGAATGGCGGCAGATCTACAAGGT
GAGTTTCCATCATCTCCGCGACACACATGTGGACCACAGCTTACGATGCG
CAACAGGCGCTCCAACTTCTAGAGTTCCTTGTCAAGAACGGATCCGAACG
AGTTGTCGACGACGCCCGCTCTCACATGTCTTTGATTCGGATGCTCCGCC
AATTCCACTACATCGACCAGAACGGAAAAGACCAGGGTATCAACGTGCGC
AACAGGTCATCGGAGTTGGTTAAGCTGCTCGGTGACGTCGACTTGATCCG
CTCGGAGAGGAAGAAGGCCAGGGCCAACCGCAACAAGTTCGGTGGATTCG
AGGGTGGCTCGCACATTGGCGGTGGCATGTCCAGCTCCAGCTCCGGCAGG
TATGGTGGCTTTGGCAGTGACAGCCTCTCGTTTGGCGGGTACAGTGGAGG
TGTCTACGGTGACGGTGGTGGATTCGGAGGCAACACAGGCGATTTCGGGG
ACTCCGGGAGACGTTCCAATCGCTTCGAGGAATATGACGAGTATGACGAG
GGTGATGCTAGTCCCCCGCGCCGGCGCGGGCCCAGTCCTCCCCGTGCTAG
TGCTACTCGTCAGGCTAAGCAGCCGGCCGCTCCTGCTCCTAAGGCTCCCG
AGCAAGACTTGTTCGACTTCGGAGAGGAGGAGACTGTCACGACTTCTGTC
AGCGCCTCCAAGAAGCCTGTCACAGGCAATGGCAGCAGCGGGCTAGATAT
TCTCGACACCCAGCCTGCTGACGACGACGACTTCGACGATTTCCAATCCG
CCACCCCAGCGCCTGCGCCGGCATCGTCAGCCCAGTTCGCCATCCCCCCG
CCGGCTTCCACTGTCAGCACGACCTCCAGCACGCAGTTCGCTGCCCCCAA
GCCAGTCTCGGCCACGCAGGGTTCGAACCTGAACGGCATTGTAGGCTTCA
CTTCGATGACCCCTACCCCGACCTCTAGCACGATGGCGTCTCCTACACTC
TCGCAGAGCTCCCTGGCACAGGCCCAAAAGCCCGCGCAACCCAAGCCCAG
TGGCTTCCAGGCCGCCACTCCCAACTACTTCACCTCCGTTTCTACCCTCT
CCAATACGACTCAGCAACCTGCTATGGGCCACCGCCCCAACATGCCCTCC
ACTTCCTCTTTCAGTTCCACCACGCCCTCTACCCCCTCTGCAGCCAGTAA
GCCCGCTGCCACCAAGGCGTCCGGTGACGTCTTCGGATCCCTCTGGTCCA
GCGCGAGCGCCAGCGCCGGTATTCAGAAGAATAACACGGGCGGAAACAAG
GGTCCTAACCTAGCCAGCATGGCCAAGCAAAAGGCCAGCGCCGGCATCTG
GGGTGCCCCCGCTGCTTCGAGCAGTCCTGCATTCAACCAGAGCAGCAACA
GCGGGACGTCGAAGACAACGGGAAGCTCTGGACTAGACGACCTGTTGGGC
TAG back to topCoding sequence (CDS) from alignment at ch4:1838505..1840557+ >KJC3_005184-T1 ID=KJC3_005184-T1|Name=KJC3_005184-T1|organism=Aspergillus niger KJC3|type=CDS|length=8115bp|location=Sequence derived from alignment at ch4:1838505..1840557+ (Aspergillus niger KJC3)
ATGGATTTCTCCAACCTCAAAGAACAGGTCAGCAACCTGACCTTGTATGA
TCTCAAGGCGGGAGTCCGCAAGGTCCAGAATGCGGTCATGAACTATACCG
AGATGGAGGCCAAGGTCCGAGAAGCTACAAACAATGAACCTTGGGGTGCC
TCGAACACACTCATGCATGAGATCGCCAGTGGAACCCATAGCTATCAATT
GCTTAACGAGATCATGCCTATGATTTACAAGCGCTTCACAGACAAGACCT
CGGAGGAATGGCGGCAGATCTACAAGGCGCTCCAACTTCTAGAGTTCCTT
GTCAAGAACGGATCCGAACGAGTTGTCGACGACGCCCGCTCTCACATGTC
TTTGATTCGGATGCTCCGCCAATTCCACTACATCGACCAGAACGGAAAAG
ACCAGGGTATCAACGTGCGCAACAGGTCATCGGAGTTGGTTAAGCTGCTC
GGTGACGTCGACTTGATCCGCTCGGAGAGGAAGAAGGCCAGGGCCAACCG
CAACAAGTTCGGTGGATTCGAGGGTGGCTCGCACATTGGCGGTGGCATGT
CCAGCTCCAGCTCCGGCAGGTATGGTGGCTTTGGCAGTGACAGCCTCTCG
TTTGGCGGGTACAGTGGAGGTGTCTACGGTGACGGTGGTGGATTCGGAGG
CAACACAGGCGATTTCGGGGACTCCGGGAGACGTTCCAATCGCTTCGAGG
AATATGACGAGTATGACGAGGGTGATGCTAGTCCCCCGCGCCGGCGCGGG
CCCAGTCCTCCCCGTGCTAGTGCTACTCGTCAGGCTAAGCAGCCGGCCGC
TCCTGCTCCTAAGGCTCCCGAGCAAGACTTGTTCGACTTCGGAGAGGAGG
AGACTGTCACGACTTCTGTCAGCGCCTCCAAGAAGCCTGTCACAGGCAAT
GGCAGCAGCGGGCTAGATATTCTCGACACCCAGCCTGCTGACGACGACGA
CTTCGACGATTTCCAATCCGCCACCCCAGCGCCTGCGCCGGCATCGTCAG
CCCAGTTCGCCATCCCCCCGCCGGCTTCCACTGTCAGCACGACCTCCAGC
ACGCAGTTCGCTGCCCCCAAGCCAGTCTCGGCCACGCAGGGTTCGAACCT
GAACGGCATTGTAGGCTTCACTTCGATGACCCCTACCCCGACCTCTAGCA
CGATGGCGTCTCCTACACTCTCGCAGAGCTCCCTGGCACAGGCCCAAAAG
CCCGCGCAACCCAAGCCCAGTGGCTTCCAGGCCGCCACTCCCAACTACTT
CACCTCCGTTTCTACCCTCTCCAATACGACTCAGCAACCTGCTATGGGCC
ACCGCCCCAACATGCCCTCCACTTCCTCTTTCAGTTCCACCACGCCCTCT
ACCCCCTCTGCAGCCAGTAAGCCCGCTGCCACCAAGGCGTCCGGTGACGT
CTTCGGATCCCTCTGGTCCAGCGCGAGCGCCAGCGCCGGTATTCAGAAGA
ATAACACGGGCGGAAACAAGGGTCCTAACCTAGCCAGCATGGCCAAGCAA
AAGGCCAGCGCCGGCATCTGGGGTGCCCCCGCTGCTTCGAGCAGTCCTGC
ATTCAACCAGAGCAGCAACAGCGGGACGTCGAAGACAACGGGAAGCTCTG
GACTAGACGACCTGTTGGGCTAGATGGATTTCTCCAACCTCAAAGAACAG
GTCAGCAACCTGACCTTGTATGATCTCAAGGCGGGAGTCCGCAAGGTCCA
GAATGCGGTCATGAACTATACCGAGATGGAGGCCAAGGTCCGAGAAGCTA
CAAACAATGAACCTTGGGGTGCCTCGAACACACTCATGCATGAGATCGCC
AGTGGAACCCATAGCTATCAATTGCTTAACGAGATCATGCCTATGATTTA
CAAGCGCTTCACAGACAAGACCTCGGAGGAATGGCGGCAGATCTACAAGG
CGCTCCAACTTCTAGAGTTCCTTGTCAAGAACGGATCCGAACGAGTTGTC
GACGACGCCCGCTCTCACATGTCTTTGATTCGGATGCTCCGCCAATTCCA
CTACATCGACCAGAACGGAAAAGACCAGGGTATCAACGTGCGCAACAGGT
CATCGGAGTTGGTTAAGCTGCTCGGTGACGTCGACTTGATCCGCTCGGAG
AGGAAGAAGGCCAGGGCCAACCGCAACAAGTTCGGTGGATTCGAGGGTGG
CTCGCACATTGGCGGTGGCATGTCCAGCTCCAGCTCCGGCAGGTATGGTG
GCTTTGGCAGTGACAGCCTCTCGTTTGGCGGGTACAGTGGAGGTGTCTAC
GGTGACGGTGGTGGATTCGGAGGCAACACAGGCGATTTCGGGGACTCCGG
GAGACGTTCCAATCGCTTCGAGGAATATGACGAGTATGACGAGGGTGATG
CTAGTCCCCCGCGCCGGCGCGGGCCCAGTCCTCCCCGTGCTAGTGCTACT
CGTCAGGCTAAGCAGCCGGCCGCTCCTGCTCCTAAGGCTCCCGAGCAAGA
CTTGTTCGACTTCGGAGAGGAGGAGACTGTCACGACTTCTGTCAGCGCCT
CCAAGAAGCCTGTCACAGGCAATGGCAGCAGCGGGCTAGATATTCTCGAC
ACCCAGCCTGCTGACGACGACGACTTCGACGATTTCCAATCCGCCACCCC
AGCGCCTGCGCCGGCATCGTCAGCCCAGTTCGCCATCCCCCCGCCGGCTT
CCACTGTCAGCACGACCTCCAGCACGCAGTTCGCTGCCCCCAAGCCAGTC
TCGGCCACGCAGGGTTCGAACCTGAACGGCATTGTAGGCTTCACTTCGAT
GACCCCTACCCCGACCTCTAGCACGATGGCGTCTCCTACACTCTCGCAGA
GCTCCCTGGCACAGGCCCAAAAGCCCGCGCAACCCAAGCCCAGTGGCTTC
CAGGCCGCCACTCCCAACTACTTCACCTCCGTTTCTACCCTCTCCAATAC
GACTCAGCAACCTGCTATGGGCCACCGCCCCAACATGCCCTCCACTTCCT
CTTTCAGTTCCACCACGCCCTCTACCCCCTCTGCAGCCAGTAAGCCCGCT
GCCACCAAGGCGTCCGGTGACGTCTTCGGATCCCTCTGGTCCAGCGCGAG
CGCCAGCGCCGGTATTCAGAAGAATAACACGGGCGGAAACAAGGGTCCTA
ACCTAGCCAGCATGGCCAAGCAAAAGGCCAGCGCCGGCATCTGGGGTGCC
CCCGCTGCTTCGAGCAGTCCTGCATTCAACCAGAGCAGCAACAGCGGGAC
GTCGAAGACAACGGGAAGCTCTGGACTAGACGACCTGTTGGGCTAGATGG
ATTTCTCCAACCTCAAAGAACAGGTCAGCAACCTGACCTTGTATGATCTC
AAGGCGGGAGTCCGCAAGGTCCAGAATGCGGTCATGAACTATACCGAGAT
GGAGGCCAAGGTCCGAGAAGCTACAAACAATGAACCTTGGGGTGCCTCGA
ACACACTCATGCATGAGATCGCCAGTGGAACCCATAGCTATCAATTGCTT
AACGAGATCATGCCTATGATTTACAAGCGCTTCACAGACAAGACCTCGGA
GGAATGGCGGCAGATCTACAAGGCGCTCCAACTTCTAGAGTTCCTTGTCA
AGAACGGATCCGAACGAGTTGTCGACGACGCCCGCTCTCACATGTCTTTG
ATTCGGATGCTCCGCCAATTCCACTACATCGACCAGAACGGAAAAGACCA
GGGTATCAACGTGCGCAACAGGTCATCGGAGTTGGTTAAGCTGCTCGGTG
ACGTCGACTTGATCCGCTCGGAGAGGAAGAAGGCCAGGGCCAACCGCAAC
AAGTTCGGTGGATTCGAGGGTGGCTCGCACATTGGCGGTGGCATGTCCAG
CTCCAGCTCCGGCAGGTATGGTGGCTTTGGCAGTGACAGCCTCTCGTTTG
GCGGGTACAGTGGAGGTGTCTACGGTGACGGTGGTGGATTCGGAGGCAAC
ACAGGCGATTTCGGGGACTCCGGGAGACGTTCCAATCGCTTCGAGGAATA
TGACGAGTATGACGAGGGTGATGCTAGTCCCCCGCGCCGGCGCGGGCCCA
GTCCTCCCCGTGCTAGTGCTACTCGTCAGGCTAAGCAGCCGGCCGCTCCT
GCTCCTAAGGCTCCCGAGCAAGACTTGTTCGACTTCGGAGAGGAGGAGAC
TGTCACGACTTCTGTCAGCGCCTCCAAGAAGCCTGTCACAGGCAATGGCA
GCAGCGGGCTAGATATTCTCGACACCCAGCCTGCTGACGACGACGACTTC
GACGATTTCCAATCCGCCACCCCAGCGCCTGCGCCGGCATCGTCAGCCCA
GTTCGCCATCCCCCCGCCGGCTTCCACTGTCAGCACGACCTCCAGCACGC
AGTTCGCTGCCCCCAAGCCAGTCTCGGCCACGCAGGGTTCGAACCTGAAC
GGCATTGTAGGCTTCACTTCGATGACCCCTACCCCGACCTCTAGCACGAT
GGCGTCTCCTACACTCTCGCAGAGCTCCCTGGCACAGGCCCAAAAGCCCG
CGCAACCCAAGCCCAGTGGCTTCCAGGCCGCCACTCCCAACTACTTCACC
TCCGTTTCTACCCTCTCCAATACGACTCAGCAACCTGCTATGGGCCACCG
CCCCAACATGCCCTCCACTTCCTCTTTCAGTTCCACCACGCCCTCTACCC
CCTCTGCAGCCAGTAAGCCCGCTGCCACCAAGGCGTCCGGTGACGTCTTC
GGATCCCTCTGGTCCAGCGCGAGCGCCAGCGCCGGTATTCAGAAGAATAA
CACGGGCGGAAACAAGGGTCCTAACCTAGCCAGCATGGCCAAGCAAAAGG
CCAGCGCCGGCATCTGGGGTGCCCCCGCTGCTTCGAGCAGTCCTGCATTC
AACCAGAGCAGCAACAGCGGGACGTCGAAGACAACGGGAAGCTCTGGACT
AGACGACCTGTTGGGCTAGATGGATTTCTCCAACCTCAAAGAACAGGTCA
GCAACCTGACCTTGTATGATCTCAAGGCGGGAGTCCGCAAGGTCCAGAAT
GCGGTCATGAACTATACCGAGATGGAGGCCAAGGTCCGAGAAGCTACAAA
CAATGAACCTTGGGGTGCCTCGAACACACTCATGCATGAGATCGCCAGTG
GAACCCATAGCTATCAATTGCTTAACGAGATCATGCCTATGATTTACAAG
CGCTTCACAGACAAGACCTCGGAGGAATGGCGGCAGATCTACAAGGCGCT
CCAACTTCTAGAGTTCCTTGTCAAGAACGGATCCGAACGAGTTGTCGACG
ACGCCCGCTCTCACATGTCTTTGATTCGGATGCTCCGCCAATTCCACTAC
ATCGACCAGAACGGAAAAGACCAGGGTATCAACGTGCGCAACAGGTCATC
GGAGTTGGTTAAGCTGCTCGGTGACGTCGACTTGATCCGCTCGGAGAGGA
AGAAGGCCAGGGCCAACCGCAACAAGTTCGGTGGATTCGAGGGTGGCTCG
CACATTGGCGGTGGCATGTCCAGCTCCAGCTCCGGCAGGTATGGTGGCTT
TGGCAGTGACAGCCTCTCGTTTGGCGGGTACAGTGGAGGTGTCTACGGTG
ACGGTGGTGGATTCGGAGGCAACACAGGCGATTTCGGGGACTCCGGGAGA
CGTTCCAATCGCTTCGAGGAATATGACGAGTATGACGAGGGTGATGCTAG
TCCCCCGCGCCGGCGCGGGCCCAGTCCTCCCCGTGCTAGTGCTACTCGTC
AGGCTAAGCAGCCGGCCGCTCCTGCTCCTAAGGCTCCCGAGCAAGACTTG
TTCGACTTCGGAGAGGAGGAGACTGTCACGACTTCTGTCAGCGCCTCCAA
GAAGCCTGTCACAGGCAATGGCAGCAGCGGGCTAGATATTCTCGACACCC
AGCCTGCTGACGACGACGACTTCGACGATTTCCAATCCGCCACCCCAGCG
CCTGCGCCGGCATCGTCAGCCCAGTTCGCCATCCCCCCGCCGGCTTCCAC
TGTCAGCACGACCTCCAGCACGCAGTTCGCTGCCCCCAAGCCAGTCTCGG
CCACGCAGGGTTCGAACCTGAACGGCATTGTAGGCTTCACTTCGATGACC
CCTACCCCGACCTCTAGCACGATGGCGTCTCCTACACTCTCGCAGAGCTC
CCTGGCACAGGCCCAAAAGCCCGCGCAACCCAAGCCCAGTGGCTTCCAGG
CCGCCACTCCCAACTACTTCACCTCCGTTTCTACCCTCTCCAATACGACT
CAGCAACCTGCTATGGGCCACCGCCCCAACATGCCCTCCACTTCCTCTTT
CAGTTCCACCACGCCCTCTACCCCCTCTGCAGCCAGTAAGCCCGCTGCCA
CCAAGGCGTCCGGTGACGTCTTCGGATCCCTCTGGTCCAGCGCGAGCGCC
AGCGCCGGTATTCAGAAGAATAACACGGGCGGAAACAAGGGTCCTAACCT
AGCCAGCATGGCCAAGCAAAAGGCCAGCGCCGGCATCTGGGGTGCCCCCG
CTGCTTCGAGCAGTCCTGCATTCAACCAGAGCAGCAACAGCGGGACGTCG
AAGACAACGGGAAGCTCTGGACTAGACGACCTGTTGGGCTAGATGGATTT
CTCCAACCTCAAAGAACAGGTCAGCAACCTGACCTTGTATGATCTCAAGG
CGGGAGTCCGCAAGGTCCAGAATGCGGTCATGAACTATACCGAGATGGAG
GCCAAGGTCCGAGAAGCTACAAACAATGAACCTTGGGGTGCCTCGAACAC
ACTCATGCATGAGATCGCCAGTGGAACCCATAGCTATCAATTGCTTAACG
AGATCATGCCTATGATTTACAAGCGCTTCACAGACAAGACCTCGGAGGAA
TGGCGGCAGATCTACAAGGCGCTCCAACTTCTAGAGTTCCTTGTCAAGAA
CGGATCCGAACGAGTTGTCGACGACGCCCGCTCTCACATGTCTTTGATTC
GGATGCTCCGCCAATTCCACTACATCGACCAGAACGGAAAAGACCAGGGT
ATCAACGTGCGCAACAGGTCATCGGAGTTGGTTAAGCTGCTCGGTGACGT
CGACTTGATCCGCTCGGAGAGGAAGAAGGCCAGGGCCAACCGCAACAAGT
TCGGTGGATTCGAGGGTGGCTCGCACATTGGCGGTGGCATGTCCAGCTCC
AGCTCCGGCAGGTATGGTGGCTTTGGCAGTGACAGCCTCTCGTTTGGCGG
GTACAGTGGAGGTGTCTACGGTGACGGTGGTGGATTCGGAGGCAACACAG
GCGATTTCGGGGACTCCGGGAGACGTTCCAATCGCTTCGAGGAATATGAC
GAGTATGACGAGGGTGATGCTAGTCCCCCGCGCCGGCGCGGGCCCAGTCC
TCCCCGTGCTAGTGCTACTCGTCAGGCTAAGCAGCCGGCCGCTCCTGCTC
CTAAGGCTCCCGAGCAAGACTTGTTCGACTTCGGAGAGGAGGAGACTGTC
ACGACTTCTGTCAGCGCCTCCAAGAAGCCTGTCACAGGCAATGGCAGCAG
CGGGCTAGATATTCTCGACACCCAGCCTGCTGACGACGACGACTTCGACG
ATTTCCAATCCGCCACCCCAGCGCCTGCGCCGGCATCGTCAGCCCAGTTC
GCCATCCCCCCGCCGGCTTCCACTGTCAGCACGACCTCCAGCACGCAGTT
CGCTGCCCCCAAGCCAGTCTCGGCCACGCAGGGTTCGAACCTGAACGGCA
TTGTAGGCTTCACTTCGATGACCCCTACCCCGACCTCTAGCACGATGGCG
TCTCCTACACTCTCGCAGAGCTCCCTGGCACAGGCCCAAAAGCCCGCGCA
ACCCAAGCCCAGTGGCTTCCAGGCCGCCACTCCCAACTACTTCACCTCCG
TTTCTACCCTCTCCAATACGACTCAGCAACCTGCTATGGGCCACCGCCCC
AACATGCCCTCCACTTCCTCTTTCAGTTCCACCACGCCCTCTACCCCCTC
TGCAGCCAGTAAGCCCGCTGCCACCAAGGCGTCCGGTGACGTCTTCGGAT
CCCTCTGGTCCAGCGCGAGCGCCAGCGCCGGTATTCAGAAGAATAACACG
GGCGGAAACAAGGGTCCTAACCTAGCCAGCATGGCCAAGCAAAAGGCCAG
CGCCGGCATCTGGGGTGCCCCCGCTGCTTCGAGCAGTCCTGCATTCAACC
AGAGCAGCAACAGCGGGACGTCGAAGACAACGGGAAGCTCTGGACTAGAC
GACCTGTTGGGCTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005184-T1.utr5p1 | KJC3_005184-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263WB5 |
| DBxref | InterPro:IPR008942 |
| DBxref | InterPro:IPR013809 |
| DBxref | PFAM:PF01417 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:1838505..1840557 + |
|
