You are here

Home

KJC3_005340-T1, KJC3_005340-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005340-T1
Unique NameKJC3_005340-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:2360046..2361823-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005340-T1 ID=KJC3_005340-T1|Name=KJC3_005340-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1778bp|location=Sequence derived from alignment at ch4:2360046..2361823- (Aspergillus niger KJC3)
CCCTCCCTCTTCCTGCATCCGCCTTCCCTATCATCCTTTTCTGTGCTGCA
TTGCCTGGCCCCGGCTGTGGTCTCTTGTCCTGTCTTTGTTGGCATTTCTG
TCCTATATATAAATCTTCCCGTCCTTCCTCTTTCCTTCTGAATCGCCTTT
TCATCTCCCCGACGGAAAAGAAGCCTCAGGCCCGGAAAATTTGATACTCG
CCAATTCCTGCCCCGACTACGCCCAACTCAGCCCAATTCCCATAATCAAG
ATGTCTCCCGCTATGGCCCAAGCCGGTGCCGGCTCTGCCGCTAAGGATGT
TAAGAGAGAATCCGCGACTGCTCGTCTTCTGGGTTCCGGTATGTGTCACC
CGTTTTGTGTCCAGGTCCTGGATTGCACTCAATATTTAACTTTCGTTCTC
AGGAACCGCCGGAATTGCGGAGCTGATGGTCTTCCACCCTGTACGATTAC
ATCCTACCCTCTCGAATATTTGCGCACCGATTGCGCTCTCTCGGCGGGAG
AAATGTGAAACTGACTCATCGACCAGGTTGATACCATCTCCAAGCGCTTG
ATGAGCAACCAGACCCGGGTACGATTCTTCCTATCCCTTATCCGTACGAG
ACTATGGAAATGCATTGGACTAATTGTGCGCTGGCTTAGATCACCTCCAC
CGCTGGTCTGAACCAGGTTGTTTTCAAGGAATACGCCAACGCCTCTTTCG
GCGGCAAGTTCACCTCTCTCTTCCCCGGTCTGGGTTACGCCGCCGGGTAC
AAGGTTCTCCAGCGTATCTACAAGTACGGTGGTCAGCCTTTCGCTCGCGA
CTACCTCGCCCAGCACTGGGGTTCCGACTTTGACAATGCTTTTGGCAAGG
GTACCGGCAAGGCGATCATGCACGCCACTGCTGGAAGGTTCGTTTCGTGT
TCCGGCCATTGATGGTAATGCTCTGGCTAATCATATGGAAATAGTTTGAT
CGGTATCGGAGAGATCGTCCTTCTGCCCCTGGACGTCCTCAAGATCAAGC
GTCAGACTAACCCCGAGGCTTTCCGTGGCCGTGGTCTGTTCAAGATCATC
TCCGATGAGGGTATGGGTCTCTACCGTGGTGCTGGTTGGACTGCCGCCCG
TAACGCTCCCGGATCTTTCGCTGTATGTTCCCATGGTTCCGATATTTGCC
TTCTTTGCCATGTGTGGGTGTCCGATACTAATGCCTGGAAATAGCTCTTC
GGTGGTTCCGCTTTCGCCAAGGAGTACATCTACAACCTGAAGGACTACAA
CACTGCTTCCTGGAGCCAGAACTTTGTTGCCTCCATCTGCGGTGCCAGTG
CCTCCCTGGTCGTGTCAGCTCCTCTGGATGTGATCAAGACCCGTATCCAG
AACCGCAACTTCGAGAACCCCGAGTCCGGCTTCCGCATTCTGTCTAACAT
GGTCAAGAACGAGGGTGTCACCAGTTTCTTCAAGGGTCTGACGCCCAAGC
TCCTGATGACCGGACCCAAGCTCGTTTTCAGCTTCTGGCTGGCTCAGACG
TTGATCCCCGCCTTTGGCCAGGTCGTTTAAGATGTTGATGATTAGCTGAT
CCAAAAAGCGAGTGTCTTTCTCATTTTCTACCCATATCCGGGGTTATTTT
GATATTATTACTTTTTATGTTCGATTCGGGGCTTTGTTTTGGTGCTGTTA
TAGAGCATTCATTCTGTTAAGCCTTTGTGTATTTATGATAGACTCTTTTT
CCCTTCGGCACTGTTCCGGATGATGGGTGCAAGATGGTATGCTCTTGGAT
ACGAAATACAACTCCTCTTAATTATGAA
back to top

Coding sequence (CDS) from alignment at ch4:2360046..2361823-

>KJC3_005340-T1 ID=KJC3_005340-T1|Name=KJC3_005340-T1|organism=Aspergillus niger KJC3|type=CDS|length=5580bp|location=Sequence derived from alignment at ch4:2360046..2361823- (Aspergillus niger KJC3)
CTCTTCGGTGGTTCCGCTTTCGCCAAGGAGTACATCTACAACCTGAAGGA
CTACAACACTGCTTCCTGGAGCCAGAACTTTGTTGCCTCCATCTGCGGTG
CCAGTGCCTCCCTGGTCGTGTCAGCTCCTCTGGATGTGATCAAGACCCGT
ATCCAGAACCGCAACTTCGAGAACCCCGAGTCCGGCTTCCGCATTCTGTC
TAACATGGTCAAGAACGAGGGTGTCACCAGTTTCTTCAAGGGTCTGACGC
CCAAGCTCCTGATGACCGGACCCAAGCTCGTTTTCAGCTTCTGGCTGGCT
CAGACGTTGATCCCCGCCTTTGGCCAGGTCGTTTAATTTGATCGGTATCG
GAGAGATCGTCCTTCTGCCCCTGGACGTCCTCAAGATCAAGCGTCAGACT
AACCCCGAGGCTTTCCGTGGCCGTGGTCTGTTCAAGATCATCTCCGATGA
GGGTATGGGTCTCTACCGTGGTGCTGGTTGGACTGCCGCCCGTAACGCTC
CCGGATCTTTCGCTATCACCTCCACCGCTGGTCTGAACCAGGTTGTTTTC
AAGGAATACGCCAACGCCTCTTTCGGCGGCAAGTTCACCTCTCTCTTCCC
CGGTCTGGGTTACGCCGCCGGGTACAAGGTTCTCCAGCGTATCTACAAGT
ACGGTGGTCAGCCTTTCGCTCGCGACTACCTCGCCCAGCACTGGGGTTCC
GACTTTGACAATGCTTTTGGCAAGGGTACCGGCAAGGCGATCATGCACGC
CACTGCTGGAAGGTTGATACCATCTCCAAGCGCTTGATGAGCAACCAGAC
CCGGGAACCGCCGGAATTGCGGAGCTGATGGTCTTCCACCCTATGTCTCC
CGCTATGGCCCAAGCCGGTGCCGGCTCTGCCGCTAAGGATGTTAAGAGAG
AATCCGCGACTGCTCGTCTTCTGGGTTCCGCTCTTCGGTGGTTCCGCTTT
CGCCAAGGAGTACATCTACAACCTGAAGGACTACAACACTGCTTCCTGGA
GCCAGAACTTTGTTGCCTCCATCTGCGGTGCCAGTGCCTCCCTGGTCGTG
TCAGCTCCTCTGGATGTGATCAAGACCCGTATCCAGAACCGCAACTTCGA
GAACCCCGAGTCCGGCTTCCGCATTCTGTCTAACATGGTCAAGAACGAGG
GTGTCACCAGTTTCTTCAAGGGTCTGACGCCCAAGCTCCTGATGACCGGA
CCCAAGCTCGTTTTCAGCTTCTGGCTGGCTCAGACGTTGATCCCCGCCTT
TGGCCAGGTCGTTTAATTTGATCGGTATCGGAGAGATCGTCCTTCTGCCC
CTGGACGTCCTCAAGATCAAGCGTCAGACTAACCCCGAGGCTTTCCGTGG
CCGTGGTCTGTTCAAGATCATCTCCGATGAGGGTATGGGTCTCTACCGTG
GTGCTGGTTGGACTGCCGCCCGTAACGCTCCCGGATCTTTCGCTATCACC
TCCACCGCTGGTCTGAACCAGGTTGTTTTCAAGGAATACGCCAACGCCTC
TTTCGGCGGCAAGTTCACCTCTCTCTTCCCCGGTCTGGGTTACGCCGCCG
GGTACAAGGTTCTCCAGCGTATCTACAAGTACGGTGGTCAGCCTTTCGCT
CGCGACTACCTCGCCCAGCACTGGGGTTCCGACTTTGACAATGCTTTTGG
CAAGGGTACCGGCAAGGCGATCATGCACGCCACTGCTGGAAGGTTGATAC
CATCTCCAAGCGCTTGATGAGCAACCAGACCCGGGAACCGCCGGAATTGC
GGAGCTGATGGTCTTCCACCCTATGTCTCCCGCTATGGCCCAAGCCGGTG
CCGGCTCTGCCGCTAAGGATGTTAAGAGAGAATCCGCGACTGCTCGTCTT
CTGGGTTCCGCTCTTCGGTGGTTCCGCTTTCGCCAAGGAGTACATCTACA
ACCTGAAGGACTACAACACTGCTTCCTGGAGCCAGAACTTTGTTGCCTCC
ATCTGCGGTGCCAGTGCCTCCCTGGTCGTGTCAGCTCCTCTGGATGTGAT
CAAGACCCGTATCCAGAACCGCAACTTCGAGAACCCCGAGTCCGGCTTCC
GCATTCTGTCTAACATGGTCAAGAACGAGGGTGTCACCAGTTTCTTCAAG
GGTCTGACGCCCAAGCTCCTGATGACCGGACCCAAGCTCGTTTTCAGCTT
CTGGCTGGCTCAGACGTTGATCCCCGCCTTTGGCCAGGTCGTTTAATTTG
ATCGGTATCGGAGAGATCGTCCTTCTGCCCCTGGACGTCCTCAAGATCAA
GCGTCAGACTAACCCCGAGGCTTTCCGTGGCCGTGGTCTGTTCAAGATCA
TCTCCGATGAGGGTATGGGTCTCTACCGTGGTGCTGGTTGGACTGCCGCC
CGTAACGCTCCCGGATCTTTCGCTATCACCTCCACCGCTGGTCTGAACCA
GGTTGTTTTCAAGGAATACGCCAACGCCTCTTTCGGCGGCAAGTTCACCT
CTCTCTTCCCCGGTCTGGGTTACGCCGCCGGGTACAAGGTTCTCCAGCGT
ATCTACAAGTACGGTGGTCAGCCTTTCGCTCGCGACTACCTCGCCCAGCA
CTGGGGTTCCGACTTTGACAATGCTTTTGGCAAGGGTACCGGCAAGGCGA
TCATGCACGCCACTGCTGGAAGGTTGATACCATCTCCAAGCGCTTGATGA
GCAACCAGACCCGGGAACCGCCGGAATTGCGGAGCTGATGGTCTTCCACC
CTATGTCTCCCGCTATGGCCCAAGCCGGTGCCGGCTCTGCCGCTAAGGAT
GTTAAGAGAGAATCCGCGACTGCTCGTCTTCTGGGTTCCGCTCTTCGGTG
GTTCCGCTTTCGCCAAGGAGTACATCTACAACCTGAAGGACTACAACACT
GCTTCCTGGAGCCAGAACTTTGTTGCCTCCATCTGCGGTGCCAGTGCCTC
CCTGGTCGTGTCAGCTCCTCTGGATGTGATCAAGACCCGTATCCAGAACC
GCAACTTCGAGAACCCCGAGTCCGGCTTCCGCATTCTGTCTAACATGGTC
AAGAACGAGGGTGTCACCAGTTTCTTCAAGGGTCTGACGCCCAAGCTCCT
GATGACCGGACCCAAGCTCGTTTTCAGCTTCTGGCTGGCTCAGACGTTGA
TCCCCGCCTTTGGCCAGGTCGTTTAATTTGATCGGTATCGGAGAGATCGT
CCTTCTGCCCCTGGACGTCCTCAAGATCAAGCGTCAGACTAACCCCGAGG
CTTTCCGTGGCCGTGGTCTGTTCAAGATCATCTCCGATGAGGGTATGGGT
CTCTACCGTGGTGCTGGTTGGACTGCCGCCCGTAACGCTCCCGGATCTTT
CGCTATCACCTCCACCGCTGGTCTGAACCAGGTTGTTTTCAAGGAATACG
CCAACGCCTCTTTCGGCGGCAAGTTCACCTCTCTCTTCCCCGGTCTGGGT
TACGCCGCCGGGTACAAGGTTCTCCAGCGTATCTACAAGTACGGTGGTCA
GCCTTTCGCTCGCGACTACCTCGCCCAGCACTGGGGTTCCGACTTTGACA
ATGCTTTTGGCAAGGGTACCGGCAAGGCGATCATGCACGCCACTGCTGGA
AGGTTGATACCATCTCCAAGCGCTTGATGAGCAACCAGACCCGGGAACCG
CCGGAATTGCGGAGCTGATGGTCTTCCACCCTATGTCTCCCGCTATGGCC
CAAGCCGGTGCCGGCTCTGCCGCTAAGGATGTTAAGAGAGAATCCGCGAC
TGCTCGTCTTCTGGGTTCCGCTCTTCGGTGGTTCCGCTTTCGCCAAGGAG
TACATCTACAACCTGAAGGACTACAACACTGCTTCCTGGAGCCAGAACTT
TGTTGCCTCCATCTGCGGTGCCAGTGCCTCCCTGGTCGTGTCAGCTCCTC
TGGATGTGATCAAGACCCGTATCCAGAACCGCAACTTCGAGAACCCCGAG
TCCGGCTTCCGCATTCTGTCTAACATGGTCAAGAACGAGGGTGTCACCAG
TTTCTTCAAGGGTCTGACGCCCAAGCTCCTGATGACCGGACCCAAGCTCG
TTTTCAGCTTCTGGCTGGCTCAGACGTTGATCCCCGCCTTTGGCCAGGTC
GTTTAATTTGATCGGTATCGGAGAGATCGTCCTTCTGCCCCTGGACGTCC
TCAAGATCAAGCGTCAGACTAACCCCGAGGCTTTCCGTGGCCGTGGTCTG
TTCAAGATCATCTCCGATGAGGGTATGGGTCTCTACCGTGGTGCTGGTTG
GACTGCCGCCCGTAACGCTCCCGGATCTTTCGCTATCACCTCCACCGCTG
GTCTGAACCAGGTTGTTTTCAAGGAATACGCCAACGCCTCTTTCGGCGGC
AAGTTCACCTCTCTCTTCCCCGGTCTGGGTTACGCCGCCGGGTACAAGGT
TCTCCAGCGTATCTACAAGTACGGTGGTCAGCCTTTCGCTCGCGACTACC
TCGCCCAGCACTGGGGTTCCGACTTTGACAATGCTTTTGGCAAGGGTACC
GGCAAGGCGATCATGCACGCCACTGCTGGAAGGTTGATACCATCTCCAAG
CGCTTGATGAGCAACCAGACCCGGGAACCGCCGGAATTGCGGAGCTGATG
GTCTTCCACCCTATGTCTCCCGCTATGGCCCAAGCCGGTGCCGGCTCTGC
CGCTAAGGATGTTAAGAGAGAATCCGCGACTGCTCGTCTTCTGGGTTCCG
CTCTTCGGTGGTTCCGCTTTCGCCAAGGAGTACATCTACAACCTGAAGGA
CTACAACACTGCTTCCTGGAGCCAGAACTTTGTTGCCTCCATCTGCGGTG
CCAGTGCCTCCCTGGTCGTGTCAGCTCCTCTGGATGTGATCAAGACCCGT
ATCCAGAACCGCAACTTCGAGAACCCCGAGTCCGGCTTCCGCATTCTGTC
TAACATGGTCAAGAACGAGGGTGTCACCAGTTTCTTCAAGGGTCTGACGC
CCAAGCTCCTGATGACCGGACCCAAGCTCGTTTTCAGCTTCTGGCTGGCT
CAGACGTTGATCCCCGCCTTTGGCCAGGTCGTTTAATTTGATCGGTATCG
GAGAGATCGTCCTTCTGCCCCTGGACGTCCTCAAGATCAAGCGTCAGACT
AACCCCGAGGCTTTCCGTGGCCGTGGTCTGTTCAAGATCATCTCCGATGA
GGGTATGGGTCTCTACCGTGGTGCTGGTTGGACTGCCGCCCGTAACGCTC
CCGGATCTTTCGCTATCACCTCCACCGCTGGTCTGAACCAGGTTGTTTTC
AAGGAATACGCCAACGCCTCTTTCGGCGGCAAGTTCACCTCTCTCTTCCC
CGGTCTGGGTTACGCCGCCGGGTACAAGGTTCTCCAGCGTATCTACAAGT
ACGGTGGTCAGCCTTTCGCTCGCGACTACCTCGCCCAGCACTGGGGTTCC
GACTTTGACAATGCTTTTGGCAAGGGTACCGGCAAGGCGATCATGCACGC
CACTGCTGGAAGGTTGATACCATCTCCAAGCGCTTGATGAGCAACCAGAC
CCGGGAACCGCCGGAATTGCGGAGCTGATGGTCTTCCACCCTATGTCTCC
CGCTATGGCCCAAGCCGGTGCCGGCTCTGCCGCTAAGGATGTTAAGAGAG
AATCCGCGACTGCTCGTCTTCTGGGTTCCG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GGC1KJC3_005340Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005340-T1KJC3_005340-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005340-T1.cdsKJC3_005340-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005340-T1.utr3p1KJC3_005340-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005340-T1.exon6KJC3_005340-T1.exon6Aspergillus niger KJC3exon
KJC3_005340-T1.exon5KJC3_005340-T1.exon5Aspergillus niger KJC3exon
KJC3_005340-T1.exon4KJC3_005340-T1.exon4Aspergillus niger KJC3exon
KJC3_005340-T1.exon3KJC3_005340-T1.exon3Aspergillus niger KJC3exon
KJC3_005340-T1.exon2KJC3_005340-T1.exon2Aspergillus niger KJC3exon
KJC3_005340-T1.exon1KJC3_005340-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005340-T1.utr5p1KJC3_005340-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263JTO
DBxrefInterPro:IPR018108
DBxrefInterPro:IPR023395
DBxrefPFAM:PF00153
ProductMitochondrial GTP/GDP carrier protein 1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:2360046..2361823 -
Powered by Drupal