|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:2615158..2618706+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005401-T2 ID=KJC3_005401-T2|Name=KJC3_005401-T2|organism=Aspergillus niger KJC3|type=mRNA|length=3549bp|location=Sequence derived from alignment at ch4:2615158..2618706+ (Aspergillus niger KJC3)
CAGGTTTCCCAGCTCTTCCTCAGTCACACTCCCGGTTCCCTTGTCCGTAC
ACCTTGTTCGCCATGGCGTCTGGGCGTAAGGACTTTTTGAGCCAAGCGGC
TCCCGAGAACTATGTTGCCGGTCTTGGTCGCGGTGCCACTGGCTTCACCA
CCCGTTCAGATCTCGGACCCGCGCGAGAAGGCCCCACGCCAGAACAGATC
CAGGCAGCACTGGCGAAGCGAGCCCAGCTGCTTGGAGCTGCTCCTCCCAC
AGCTTATGGCGCAGGGCGAGAGAAGGGTGGTAAAGATGAGAAGGCGGATG
AAGAGGAAGATGACGAGCGATTTCAAGACCCGGACAATGAAGTCGGGCTA
TTCGCATATGGTCAGTTCGACCAAGAGGATGATGAGGCGGACCGCATCTA
CAGAGAGGTGGATGAAAAGATGGACAAGCGCCGGAAGATGAGAAGGTTAG
TTCCCCGCCCCTTTGCCTCCCCTTCTGCTATTTCTATGAAGCGATTTGTT
CATCCGCTTCTCCATATGCGGTTTGCCTGGACAGATTACCGACGTAATTC
CTCCACCATTCACAGGGAAGCTCGCGAACAGCAAGAACGAGAAGACTACG
AACGCAAGAACCCTAAGATTCAGCAGCAATTTGCAGATCTAAAACGATCC
TTAGCCTCTGTCTCCGAGGACGAGTGGGCAAACCTCCCGGAGGTGGGAGA
TCTCACCGGAAAGAACCGACGCGCAAAGCAGAACCTTCGGCAGAGATTCT
ACGCAGTACCGGACAGTGTGATCGCGAGCGCAAGAGACTCGACCCAGTTT
GAGACAACGATTGCAGAGGACGGGACCCAGACCGCAGCCAATGGAGCGGA
GGCAGCTGATGGGACAATCACCAATTTTGCAGACATCAGTGCTGCGCGTG
ATAAAGTCTTGAAAGTTAGGCTCGACCAAGCGGCGATGGGATCATCTGGG
GATTCTGCGTCTGGAAGCGCTACCAACATCGATCCAAAGGGCTACCTTAC
AAGTCTCACGCAGTCTGAGCTGAAAGCTGGAGAAGTAGAAATTGGAGACA
TTAAGCGGGTCCGCGTTTTGTTGGAATCTGTAACGAAAACGAATCCCAAG
CATGCGCCGGGATGGATTGCGCTGGCGCGTCTAGAAGAATTAGCCGGTAA
AATCGTGACTGCCAGGAATGTAATCGCCAAGGGTTGCGAGTTGTGCCCGA
AAAGTGAAGATGCCTGGCTTGAAAACATTCGCCTTAACGAGGGCCATAAT
GCCAAGGTGATTGCGGCTAATGCCATCAAGAACAATGACCGTTCTACAAG
ACTATGGATCGAAGCCATGCGATTGGAGACAGAGCCTCGTGCGAAGAAGA
ACGTTCTTAGACAGGCGATCCTTCACATACCTCAGTCTGTTACGATCTGG
AAAGAAGCCGTCAACCTGGAGGACGACCCTGCCGATGCACGTCTGCTTCT
GGCGAAGGCAGTTGAGATGATCCCCCTTTCCGTTGAGCTCTGGCTGGCTC
TGGCTCGCCTAGAATCACCGGAGAATGCACAGAAGGTTCTCAATGCCGCC
CGCAAAGCGGTTCCCACAAGCCACGAAGTCTGGGTCGCTGCTGCCCGCCT
GCAGGAGCAGATGGGTACGTTCGAGAAGGTGAATGTGATGAAGAGAGCTG
TCCAAGCCCTCGCGAGAGAAAACGCCATGCTCAAACGGGAGGAGTGGGTA
GCGGAGGCTGAGAAGTGCGAAGAGGAAGGTGCTATTCTCACCTGTGGCGC
CATCATTCGTGAGACTCTCGGATGGGGCTTGGATGAGGATGACGATCGCA
AGGACATCTGGATGGATGACGCAAAGGCTAGTATTGCCAGGGGGAAGTAC
GAAACTGCCAGGGCTATCTATGCCTACGCGCTGCGTGTTTTCGTCAACCG
TCGTTCAATCTGGATTGCGGCAGCCGAGTTGGAGCGCAACCACGGTAGTA
AAGAAGCGCTGTGGCAAGTCCTTGAAAAGGCCGTTGAGGCGTGCCCGCAA
AGTGAGGAACTATGGCTGCAGCTTGCGAAAGAAAAGTGGCAGTCCGGCGA
GATCGACGATGCCCGGAGAGTGCTCGGCCGTGCCTTCAACCAGAACCCCA
ACAACGAGGATATCTGGCTGGCTGCTGTCAAGCTAGAGGCCGATGCCAAC
CAAACATCCGAAGCCAGAGAACTTCTTGCAACTGCTCGACGCGAAGCGGG
TACGGACCGCGTTTGGATAAAGAGCGTCGCGTTCGAGCGACAGCTCGGCA
ACATCGACGAGGCGCTCGATCTGGTGAACCAAGGACTTCAAATCTATCCC
AAGGCGGACAAACTCTGGATGATGAAGGGACAGATCTACGAAGCCCAAAA
CAAATACCCACAGGCTCGGGAAGCTTACGGGACCGGAACCAGAGCCTGCA
ACAAGTCCATCCCACTCTGGCTGTTGGCCTCAAGACTTGAAGAAAAGGCC
GGTGCGGTCGTAAAGGCTCGTTCAGTGCTCGACCGTGCCCGCCTTGCGGT
CCCCAAGAGTCCAGAGCTCTGGACCGAAAGTGTGCGCGTAGAGCGGCGAG
CAAACAACATTGCCCAAGCCAAGGTCCTAATGGCCAAGGCACTGCAAGAA
GTCCCTACCTCCGGATTACTATGGAGCGAAAGCATTTGGCACCTGGAGCC
GCGCGCGCAACGGAAAGCTCGGAGTCTGGAAGCGATCAAGAAGGCTGATA
ACGATCCGATTCTCTTTATTACCGTGGCGCGGATTTTCTGGGGCGAGCGC
CGATTGGAAAAAGCACTCACCTGGTTCGAGAAAGCCATTGTCTCGGATAG
TGATATGGGCGACGCATGGGCTTGGTACTACAAATTCTTGTTGCAGCATG
GCACAGAGGTATGTCTTTTATTCATAACAAAAAAGAATAATCTGTCTAGG
ATGTACGTGACTGACAGCAATTCCCAGGAAAAACGCGCCGATGTAATATC
CAAGTGTATTTCGACCGAGCCCAAGCACGGAGAAATCTGGCAATCCGTGG
CCAAAGACCCCGCCAACGCGCTCAAGTCGACAGAAGAGATTTTGAAGATG
GTTGCAGACCGTCTGACCTAATTGATTTCATGATGCCTTGCTTTCTTGAC
CTCGCATGTTCATCATTCCTTACGATATCCAGTTCATTGCCCTAGAGGAT
ACGTTGGCGTTTCCGGCGAAGTGAAACAGGGTTCACCAGCCAACCGCTCT
CCGCTTGGTTGGTTTGGCTACATCTTTACAAAACGATTACCACTATAAGG
AGAAACCCCTGAAAAATGCATACAGGTAATATCGGCCTAATTAGCCTTTG
CATTAAGAGCGGTGCAGTTGCAGATTAAACCAACCATACAACCAAGTGGT
CCTGCGCGCGGTGCGGGTGCTGAGACATTTCTCTTGAGAAGTCTCATGAG
GTCACTCTTTCTCTCTATCATGATCAGCTAGTAAAATGGTTTCCACCAAG
CATATGCAAGCCAAGAATGGAAGGCAAGATAATGTACAGTAAACAGCAAA
CACACACAACACGATTCTTCTTCTTCTTATTTCTCTTCCGCATGGTTAT back to topCoding sequence (CDS) from alignment at ch4:2615158..2618706+ >KJC3_005401-T2 ID=KJC3_005401-T2|Name=KJC3_005401-T2|organism=Aspergillus niger KJC3|type=CDS|length=5880bp|location=Sequence derived from alignment at ch4:2615158..2618706+ (Aspergillus niger KJC3)
ATGGCGTCTGGGCGTAAGGACTTTTTGAGCCAAGCGGCTCCCGAGAACTA
TGTTGCCGGTCTTGGTCGCGGTGCCACTGGCTTCACCACCCGTTCAGATC
TCGGACCCGCGCGAGAAGGCCCCACGCCAGAACAGATCCAGGCAGCACTG
GCGAAGCGAGCCCAGCTGCTTGGAGCTGCTCCTCCCACAGCTTATGGCGC
AGGGCGAGAGAAGGGTGGTAAAGATGAGAAGGCGGATGAAGAGGAAGATG
ACGAGCGATTTCAAGACCCGGACAATGAAGTCGGGCTATTCGCATATGGT
CAGTTCGACCAAGAGGATGATGAGGCGGACCGCATCTACAGAGAGGTGGA
TGAAAAGATGGACAAGCGCCGGAAGATGAGAAGGTTAGTTCCCCGCCCCT
TTGCCTCCCCTTCTGCTATTTCTATGAAGCGATTTGTTCATCCGCTTCTC
CATATGCGGTTTGCCTGGACAGATTACCGACGTAATTCCTCCACCATTCA
CAGGGAAGCTCGCGAACAGCAAGAACGAGAAGACTACGAACGCAAGAACC
CTAAGATTCAGCAGCAATTTGCAGATCTAAAACGATCCTTAGCCTCTGTC
TCCGAGGACGAGTGGGCAAACCTCCCGGAGGTGGGAGATCTCACCGGAAA
GAACCGACGCGCAAAGCAGAACCTTCGGCAGAGATTCTACGCAGTACCGG
ACAGTGTGATCGCGAGCGCAAGAGACTCGACCCAGTTTGAGACAACGATT
GCAGAGGACGGGACCCAGACCGCAGCCAATGGAGCGGAGGCAGCTGATGG
GACAATCACCAATTTTGCAGACATCAGTGCTGCGCGTGATAAAGTCTTGA
AAGTTAGGCTCGACCAAGCGGCGATGGGATCATCTGGGGATTCTGCGTCT
GGAAGCGCTACCAACATCGATCCAAAGGGCTACCTTACAAGTCTCACGCA
GTCTGAGCTGAAAGCTGGAGAAGTAGAAATTGGAGACATTAAGCGGGTCC
GCGTTTTGTTGGAATCTGTAACGAAAACGAATCCCAAGCATGCGCCGGGA
TGGATTGCGCTGGCGCGTCTAGAAGAATTAGCCGGTAAAATCGTGACTGC
CAGGAATGTAATCGCCAAGGGTTGCGAGTTGTGCCCGAAAAGTGAAGATG
CCTGGCTTGAAAACATTCGCCTTAACGAGGGCCATAATGCCAAGGTGATT
GCGGCTAATGCCATCAAGAACAATGACCGTTCTACAAGACTATGGATCGA
AGCCATGCGATTGGAGACAGAGCCTCGTGCGAAGAAGAACGTTCTTAGAC
AGGCGATCCTTCACATACCTCAGTCTGTTACGATCTGGAAAGAAGCCGTC
AACCTGGAGGACGACCCTGCCGATGCACGTCTGCTTCTGGCGAAGGCAGT
TGAGATGATCCCCCTTTCCGTTGAGCTCTGGCTGGCTCTGGCTCGCCTAG
AATCACCGGAGAATGCACAGAAGGTTCTCAATGCCGCCCGCAAAGCGGTT
CCCACAAGCCACGAAGTCTGGGTCGCTGCTGCCCGCCTGCAGGAGCAGAT
GGGTACGTTCGAGAAGGTGAATGTGATGAAGAGAGCTGTCCAAGCCCTCG
CGAGAGAAAACGCCATGCTCAAACGGGAGGAGTGGGTAGCGGAGGCTGAG
AAGTGCGAAGAGGAAGGTGCTATTCTCACCTGTGGCGCCATCATTCGTGA
GACTCTCGGATGGGGCTTGGATGAGGATGACGATCGCAAGGACATCTGGA
TGGATGACGCAAAGGCTAGTATTGCCAGGGGGAAGTACGAAACTGCCAGG
GCTATCTATGCCTACGCGCTGCGTGTTTTCGTCAACCGTCGTTCAATCTG
GATTGCGGCAGCCGAGTTGGAGCGCAACCACGGTAGTAAAGAAGCGCTGT
GGCAAGTCCTTGAAAAGGCCGTTGAGGCGTGCCCGCAAAGTGAGGAACTA
TGGCTGCAGCTTGCGAAAGAAAAGTGGCAGTCCGGCGAGATCGACGATGC
CCGGAGAGTGCTCGGCCGTGCCTTCAACCAGAACCCCAACAACGAGGATA
TCTGGCTGGCTGCTGTCAAGCTAGAGGCCGATGCCAACCAAACATCCGAA
GCCAGAGAACTTCTTGCAACTGCTCGACGCGAAGCGGGTACGGACCGCGT
TTGGATAAAGAGCGTCGCGTTCGAGCGACAGCTCGGCAACATCGACGAGG
CGCTCGATCTGGTGAACCAAGGACTTCAAATCTATCCCAAGGCGGACAAA
CTCTGGATGATGAAGGGACAGATCTACGAAGCCCAAAACAAATACCCACA
GGCTCGGGAAGCTTACGGGACCGGAACCAGAGCCTGCAACAAGTCCATCC
CACTCTGGCTGTTGGCCTCAAGACTTGAAGAAAAGGCCGGTGCGGTCGTA
AAGGCTCGTTCAGTGCTCGACCGTGCCCGCCTTGCGGTCCCCAAGAGTCC
AGAGCTCTGGACCGAAAGTGTGCGCGTAGAGCGGCGAGCAAACAACATTG
CCCAAGCCAAGGTCCTAATGGCCAAGGCACTGCAAGAAGTCCCTACCTCC
GGATTACTATGGAGCGAAAGCATTTGGCACCTGGAGCCGCGCGCGCAACG
GAAAGCTCGGAGTCTGGAAGCGATCAAGAAGGCTGATAACGATCCGATTC
TCTTTATTACCGTGGCGCGGATTTTCTGGGGCGAGCGCCGATTGGAAAAA
GCACTCACCTGGTTCGAGAAAGCCATTGTCTCGGATAGTGATATGGGCGA
CGCATGGGCTTGGTACTACAAATTCTTGTTGCAGCATGGCACAGAGGAAA
AACGCGCCGATGTAATATCCAAGTGTATTTCGACCGAGCCCAAGCACGGA
GAAATCTGGCAATCCGTGGCCAAAGACCCCGCCAACGCGCTCAAGTCGAC
AGAAGAGATTTTGAAGATGGTTGCAGACCGTCTGACCTAAATGGCGTCTG
GGCGTAAGGACTTTTTGAGCCAAGCGGCTCCCGAGAACTATGTTGCCGGT
CTTGGTCGCGGTGCCACTGGCTTCACCACCCGTTCAGATCTCGGACCCGC
GCGAGAAGGCCCCACGCCAGAACAGATCCAGGCAGCACTGGCGAAGCGAG
CCCAGCTGCTTGGAGCTGCTCCTCCCACAGCTTATGGCGCAGGGCGAGAG
AAGGGTGGTAAAGATGAGAAGGCGGATGAAGAGGAAGATGACGAGCGATT
TCAAGACCCGGACAATGAAGTCGGGCTATTCGCATATGGTCAGTTCGACC
AAGAGGATGATGAGGCGGACCGCATCTACAGAGAGGTGGATGAAAAGATG
GACAAGCGCCGGAAGATGAGAAGGTTAGTTCCCCGCCCCTTTGCCTCCCC
TTCTGCTATTTCTATGAAGCGATTTGTTCATCCGCTTCTCCATATGCGGT
TTGCCTGGACAGATTACCGACGTAATTCCTCCACCATTCACAGGGAAGCT
CGCGAACAGCAAGAACGAGAAGACTACGAACGCAAGAACCCTAAGATTCA
GCAGCAATTTGCAGATCTAAAACGATCCTTAGCCTCTGTCTCCGAGGACG
AGTGGGCAAACCTCCCGGAGGTGGGAGATCTCACCGGAAAGAACCGACGC
GCAAAGCAGAACCTTCGGCAGAGATTCTACGCAGTACCGGACAGTGTGAT
CGCGAGCGCAAGAGACTCGACCCAGTTTGAGACAACGATTGCAGAGGACG
GGACCCAGACCGCAGCCAATGGAGCGGAGGCAGCTGATGGGACAATCACC
AATTTTGCAGACATCAGTGCTGCGCGTGATAAAGTCTTGAAAGTTAGGCT
CGACCAAGCGGCGATGGGATCATCTGGGGATTCTGCGTCTGGAAGCGCTA
CCAACATCGATCCAAAGGGCTACCTTACAAGTCTCACGCAGTCTGAGCTG
AAAGCTGGAGAAGTAGAAATTGGAGACATTAAGCGGGTCCGCGTTTTGTT
GGAATCTGTAACGAAAACGAATCCCAAGCATGCGCCGGGATGGATTGCGC
TGGCGCGTCTAGAAGAATTAGCCGGTAAAATCGTGACTGCCAGGAATGTA
ATCGCCAAGGGTTGCGAGTTGTGCCCGAAAAGTGAAGATGCCTGGCTTGA
AAACATTCGCCTTAACGAGGGCCATAATGCCAAGGTGATTGCGGCTAATG
CCATCAAGAACAATGACCGTTCTACAAGACTATGGATCGAAGCCATGCGA
TTGGAGACAGAGCCTCGTGCGAAGAAGAACGTTCTTAGACAGGCGATCCT
TCACATACCTCAGTCTGTTACGATCTGGAAAGAAGCCGTCAACCTGGAGG
ACGACCCTGCCGATGCACGTCTGCTTCTGGCGAAGGCAGTTGAGATGATC
CCCCTTTCCGTTGAGCTCTGGCTGGCTCTGGCTCGCCTAGAATCACCGGA
GAATGCACAGAAGGTTCTCAATGCCGCCCGCAAAGCGGTTCCCACAAGCC
ACGAAGTCTGGGTCGCTGCTGCCCGCCTGCAGGAGCAGATGGGTACGTTC
GAGAAGGTGAATGTGATGAAGAGAGCTGTCCAAGCCCTCGCGAGAGAAAA
CGCCATGCTCAAACGGGAGGAGTGGGTAGCGGAGGCTGAGAAGTGCGAAG
AGGAAGGTGCTATTCTCACCTGTGGCGCCATCATTCGTGAGACTCTCGGA
TGGGGCTTGGATGAGGATGACGATCGCAAGGACATCTGGATGGATGACGC
AAAGGCTAGTATTGCCAGGGGGAAGTACGAAACTGCCAGGGCTATCTATG
CCTACGCGCTGCGTGTTTTCGTCAACCGTCGTTCAATCTGGATTGCGGCA
GCCGAGTTGGAGCGCAACCACGGTAGTAAAGAAGCGCTGTGGCAAGTCCT
TGAAAAGGCCGTTGAGGCGTGCCCGCAAAGTGAGGAACTATGGCTGCAGC
TTGCGAAAGAAAAGTGGCAGTCCGGCGAGATCGACGATGCCCGGAGAGTG
CTCGGCCGTGCCTTCAACCAGAACCCCAACAACGAGGATATCTGGCTGGC
TGCTGTCAAGCTAGAGGCCGATGCCAACCAAACATCCGAAGCCAGAGAAC
TTCTTGCAACTGCTCGACGCGAAGCGGGTACGGACCGCGTTTGGATAAAG
AGCGTCGCGTTCGAGCGACAGCTCGGCAACATCGACGAGGCGCTCGATCT
GGTGAACCAAGGACTTCAAATCTATCCCAAGGCGGACAAACTCTGGATGA
TGAAGGGACAGATCTACGAAGCCCAAAACAAATACCCACAGGCTCGGGAA
GCTTACGGGACCGGAACCAGAGCCTGCAACAAGTCCATCCCACTCTGGCT
GTTGGCCTCAAGACTTGAAGAAAAGGCCGGTGCGGTCGTAAAGGCTCGTT
CAGTGCTCGACCGTGCCCGCCTTGCGGTCCCCAAGAGTCCAGAGCTCTGG
ACCGAAAGTGTGCGCGTAGAGCGGCGAGCAAACAACATTGCCCAAGCCAA
GGTCCTAATGGCCAAGGCACTGCAAGAAGTCCCTACCTCCGGATTACTAT
GGAGCGAAAGCATTTGGCACCTGGAGCCGCGCGCGCAACGGAAAGCTCGG
AGTCTGGAAGCGATCAAGAAGGCTGATAACGATCCGATTCTCTTTATTAC
CGTGGCGCGGATTTTCTGGGGCGAGCGCCGATTGGAAAAAGCACTCACCT
GGTTCGAGAAAGCCATTGTCTCGGATAGTGATATGGGCGACGCATGGGCT
TGGTACTACAAATTCTTGTTGCAGCATGGCACAGAGGAAAAACGCGCCGA
TGTAATATCCAAGTGTATTTCGACCGAGCCCAAGCACGGAGAAATCTGGC
AATCCGTGGCCAAAGACCCCGCCAACGCGCTCAAGTCGACAGAAGAGATT
TTGAAGATGGTTGCAGACCGTCTGACCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
| GO:0006396 | RNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005401-T2.utr5p1 | KJC3_005401-T2.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005401-T2.utr3p1 | KJC3_005401-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013026 |
| DBxref | InterPro:IPR010491 |
| DBxref | InterPro:IPR011990 |
| DBxref | InterPro:IPR003107 |
| DBxref | InterPro:IPR019734 |
| DBxref | PFAM:PF14559 |
| DBxref | PFAM:PF13432 |
| DBxref | PFAM:PF13428 |
| Product | variant 2 |
| Product | Pre-mRNA-processing factor 6 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:2615158..2618706 + |
|
