You are here

Home

KJC3_005641-T1, KJC3_005641-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005641-T1
Unique NameKJC3_005641-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3301742..3303463-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005641-T1 ID=KJC3_005641-T1|Name=KJC3_005641-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1722bp|location=Sequence derived from alignment at ch4:3301742..3303463- (Aspergillus niger KJC3)
CTTCCTTTTTCTTCAAATAATAATCATGAAAATGCCGGATATCAATTCGT
TGGACAGTGCTCGTCCTCTCGGCGGTGCGGTGGCTGCTCATAGCTACTCG
TCGCATCCGGAATCTAATCTTGAGGACCTGTCTGGCCATGAAGAAATTCC
TGGCCATCCTCTGGGCGTGAAACCCAGTGGCAATGCCTTGCTCGCCGCAG
AGAACCTGCGCCATGCAATTGGGACCTTTAATATCCTACCGGATGAGTCG
ATATTGATGTTGCTGGAATACCTCGACGGGCCCAGTTTGTTGAATATTGG
ACAGTCATGCAAGGCATTTTATGCTTTTACCAGAGCCGAGGATCTCTGGA
AAGCTCTTTTTATCGGGTGAGATATAGATCTATTGTTCTTACATTATTGT
TATTGTCTGCATCTGCTTGCGAGAGTACTGCTCTTCTATTTCTGTTGCAT
TGTGGGACATGGCAATTTGCTCTCATCACATTTATAGATTTACAACTAGA
CGGCCTGGGGCATTGTACTAACGTTTCAGTTAGGTCTCCTCCCGCTTCGT
TCTCATGGAAAGGAACATGGCGTTCAACTTATCTTAACATTCCTCCATCG
GAAGAGTGCATCCTGGACTGCTCGAATCTATTCTCGGATGTCCTGCACCG
ACCCTTTCACTGCGCCCACATATCTCTAGATCCCTACATCAAGAATATCC
CTGCCCGCAACCAAATTGCTCGTCTCCCCGATCTCTCTTTCGAGGAGTTC
AATGAAAAATGGAGCGATACGCCCTTCATCTTGACTGAGCCGGTGAAACA
ATGGCCAGCGTACAAGAATTGGTCCGTAAACATGCTACTAGATCACTACG
GCGAGGTTGTCTTCCGTGCAGAGGCAGTGGATTGGCCTTTCCATACTTAT
GTCGATTACATGCACAACAACTCCGATGAGAGTCCTCTTTACCTGTTCGA
CCGGGCCTTTGTCTCGAAGATGGGCCTTAAGGTCGGTCAACCGGACCAGG
AGCCTGAAGCCACTTACTGGCCTCCCGGTTGCTTTGGAGAAGACTTCTTC
TCCGTGCTGGGCAACGATCGCCCTGACAGGCAGTGGCTGATCATTGGACC
CGAGCGGTCTGGAAGTACATTTCACAAGGACCCGAACGCTACCAGTGCCT
GGAACGCGGTTGTCCGTGGCTCGAAGTACTGGATCATGTTCCCGTCGTCT
TCGAAGCTCCCGCCGCCTCCGGGTGTCTATGTGTCAGACGATCAGAGTGA
AGTGACTTCCCCTCTTAGCATTGCTGAGTGGCTTTTTGGCTTCCACGCAG
AGGCACGACGCACTCCAGGCTGTATTGAGGGGATCTGTCACGAGGGGGAG
ATTCTCCACGTTCCTTCGGGATGGTGGCACTTGGTCGTCAACATCGAGCC
GGCTATTGCCATTACTCAGAACTTCATACCCCGTGCCCATCTGAGCGCTG
CGCTGGACTTCTTGTCTAACAAGGCCGACCAGATTTCAGGTTTCAGGAAG
GACGTAAACAATCCTTACGAACGGTTTGTGGCGCAGATGCAGAAATCGCA
CCCTGAACTCTTGGAACAGGCGCAGGCAGAGCTGCAGAAGAAGAACGAGG
GGAAGAAACGGAAATGGGACGAAATTGTGCACGGAAACCCTGAGCAAGAC
GGAGGGGAGGCCGCCGAAGGAGGCGGTTTCAGCTTTGGGTTTGGAGATGA
CAGCGATGTTGAAGTCCCCTAA
back to top

Coding sequence (CDS) from alignment at ch4:3301742..3303463-

>KJC3_005641-T1 ID=KJC3_005641-T1|Name=KJC3_005641-T1|organism=Aspergillus niger KJC3|type=CDS|length=3060bp|location=Sequence derived from alignment at ch4:3301742..3303463- (Aspergillus niger KJC3)
GTCTCCTCCCGCTTCGTTCTCATGGAAAGGAACATGGCGTTCAACTTATC
TTAACATTCCTCCATCGGAAGAGTGCATCCTGGACTGCTCGAATCTATTC
TCGGATGTCCTGCACCGACCCTTTCACTGCGCCCACATATCTCTAGATCC
CTACATCAAGAATATCCCTGCCCGCAACCAAATTGCTCGTCTCCCCGATC
TCTCTTTCGAGGAGTTCAATGAAAAATGGAGCGATACGCCCTTCATCTTG
ACTGAGCCGGTGAAACAATGGCCAGCGTACAAGAATTGGTCCGTAAACAT
GCTACTAGATCACTACGGCGAGGTTGTCTTCCGTGCAGAGGCAGTGGATT
GGCCTTTCCATACTTATGTCGATTACATGCACAACAACTCCGATGAGAGT
CCTCTTTACCTGTTCGACCGGGCCTTTGTCTCGAAGATGGGCCTTAAGGT
CGGTCAACCGGACCAGGAGCCTGAAGCCACTTACTGGCCTCCCGGTTGCT
TTGGAGAAGACTTCTTCTCCGTGCTGGGCAACGATCGCCCTGACAGGCAG
TGGCTGATCATTGGACCCGAGCGGTCTGGAAGTACATTTCACAAGGACCC
GAACGCTACCAGTGCCTGGAACGCGGTTGTCCGTGGCTCGAAGTACTGGA
TCATGTTCCCGTCGTCTTCGAAGCTCCCGCCGCCTCCGGGTGTCTATGTG
TCAGACGATCAGAGTGAAGTGACTTCCCCTCTTAGCATTGCTGAGTGGCT
TTTTGGCTTCCACGCAGAGGCACGACGCACTCCAGGCTGTATTGAGGGGA
TCTGTCACGAGGGGGAGATTCTCCACGTTCCTTCGGGATGGTGGCACTTG
GTCGTCAACATCGAGCCGGCTATTGCCATTACTCAGAACTTCATACCCCG
TGCCCATCTGAGCGCTGCGCTGGACTTCTTGTCTAACAAGGCCGACCAGA
TTTCAGGTTTCAGGAAGGACGTAAACAATCCTTACGAACGGTTTGTGGCG
CAGATGCAGAAATCGCACCCTGAACTCTTGGAACAGGCGCAGGCAGAGCT
GCAGAAGAAGAACGAGGGGAAGAAACGGAAATGGGACGAAATTGTGCACG
GAAACCCTGAGCAAGACGGAGGGGAGGCCGCCGAAGGAGGCGGTTTCAGC
TTTGGGTTTGGAGATGACAGCGATGTTGAAGTCCCCTAAATGAAAATGCC
GGATATCAATTCGTTGGACAGTGCTCGTCCTCTCGGCGGTGCGGTGGCTG
CTCATAGCTACTCGTCGCATCCGGAATCTAATCTTGAGGACCTGTCTGGC
CATGAAGAAATTCCTGGCCATCCTCTGGGCGTGAAACCCAGTGGCAATGC
CTTGCTCGCCGCAGAGAACCTGCGCCATGCAATTGGGACCTTTAATATCC
TACCGGATGAGTCGATATTGATGTTGCTGGAATACCTCGACGGGCCCAGT
TTGTTGAATATTGGACAGTCATGCAAGGCATTTTATGCTTTTACCAGAGC
CGAGGATCTCTGGAAAGCTCTTTTTATCGGGTCTCCTCCCGCTTCGTTCT
CATGGAAAGGAACATGGCGTTCAACTTATCTTAACATTCCTCCATCGGAA
GAGTGCATCCTGGACTGCTCGAATCTATTCTCGGATGTCCTGCACCGACC
CTTTCACTGCGCCCACATATCTCTAGATCCCTACATCAAGAATATCCCTG
CCCGCAACCAAATTGCTCGTCTCCCCGATCTCTCTTTCGAGGAGTTCAAT
GAAAAATGGAGCGATACGCCCTTCATCTTGACTGAGCCGGTGAAACAATG
GCCAGCGTACAAGAATTGGTCCGTAAACATGCTACTAGATCACTACGGCG
AGGTTGTCTTCCGTGCAGAGGCAGTGGATTGGCCTTTCCATACTTATGTC
GATTACATGCACAACAACTCCGATGAGAGTCCTCTTTACCTGTTCGACCG
GGCCTTTGTCTCGAAGATGGGCCTTAAGGTCGGTCAACCGGACCAGGAGC
CTGAAGCCACTTACTGGCCTCCCGGTTGCTTTGGAGAAGACTTCTTCTCC
GTGCTGGGCAACGATCGCCCTGACAGGCAGTGGCTGATCATTGGACCCGA
GCGGTCTGGAAGTACATTTCACAAGGACCCGAACGCTACCAGTGCCTGGA
ACGCGGTTGTCCGTGGCTCGAAGTACTGGATCATGTTCCCGTCGTCTTCG
AAGCTCCCGCCGCCTCCGGGTGTCTATGTGTCAGACGATCAGAGTGAAGT
GACTTCCCCTCTTAGCATTGCTGAGTGGCTTTTTGGCTTCCACGCAGAGG
CACGACGCACTCCAGGCTGTATTGAGGGGATCTGTCACGAGGGGGAGATT
CTCCACGTTCCTTCGGGATGGTGGCACTTGGTCGTCAACATCGAGCCGGC
TATTGCCATTACTCAGAACTTCATACCCCGTGCCCATCTGAGCGCTGCGC
TGGACTTCTTGTCTAACAAGGCCGACCAGATTTCAGGTTTCAGGAAGGAC
GTAAACAATCCTTACGAACGGTTTGTGGCGCAGATGCAGAAATCGCACCC
TGAACTCTTGGAACAGGCGCAGGCAGAGCTGCAGAAGAAGAACGAGGGGA
AGAAACGGAAATGGGACGAAATTGTGCACGGAAACCCTGAGCAAGACGGA
GGGGAGGCCGCCGAAGGAGGCGGTTTCAGCTTTGGGTTTGGAGATGACAG
CGATGTTGAAGTCCCCTAAATGAAAATGCCGGATATCAATTCGTTGGACA
GTGCTCGTCCTCTCGGCGGTGCGGTGGCTGCTCATAGCTACTCGTCGCAT
CCGGAATCTAATCTTGAGGACCTGTCTGGCCATGAAGAAATTCCTGGCCA
TCCTCTGGGCGTGAAACCCAGTGGCAATGCCTTGCTCGCCGCAGAGAACC
TGCGCCATGCAATTGGGACCTTTAATATCCTACCGGATGAGTCGATATTG
ATGTTGCTGGAATACCTCGACGGGCCCAGTTTGTTGAATATTGGACAGTC
ATGCAAGGCATTTTATGCTTTTACCAGAGCCGAGGATCTCTGGAAAGCTC
TTTTTATCGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005641KJC3_005641Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005641-T1KJC3_005641-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005641-T1.cdsKJC3_005641-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005641-T1.exon2KJC3_005641-T1.exon2Aspergillus niger KJC3exon
KJC3_005641-T1.exon1KJC3_005641-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005641-T1.utr5p1KJC3_005641-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036047
DBxrefInterPro:IPR001810
DBxrefInterPro:IPR041667
DBxrefInterPro:IPR003347
DBxrefPFAM:PF02373
DBxrefPFAM:PF12937
DBxrefPFAM:PF13621
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3301742..3303463 -
Powered by Drupal