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KJC3_005743-T1, KJC3_005743-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005743-T1
Unique NameKJC3_005743-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:3586296..3588344-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005743-T1 ID=KJC3_005743-T1|Name=KJC3_005743-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2049bp|location=Sequence derived from alignment at ch4:3586296..3588344- (Aspergillus niger KJC3)
GGCCAGCTCCCCTCCTCCACTGACTTGATTCTCTTTTCTTTCACCCTTTT
ACTTCGATTTACAGACCTGGTGTATTCAACATGGCGGACGGAATTGACAG
ACGCGCTGATGGTAGGACCTCCAAAAGTCCCCAACAGTTATTCAGGTCGG
TATACTGACTGCGCAAAACTAGACCGCATGGAGTTCAATACCTCGAAGGA
GGTCACTGTTGCTCCTACCTTCGAGGACATGCACTTGAAGGAGAGCCTTC
TCCGTGGTATCTACGCTTATGGCTACGAATCTCCGTCTGCAGTCCAGTCC
CGTGCCATTGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCA
ATCCGGTACTGGTAAGACCGCTACATTCTCGATTAGTATCCTCCAGGTCA
TCGATACCGTCGTCCGCGAATCTCAGGGTATGTAATATGCGCTCAATTGC
ATTTTGTTGGTGGTAATCTCACATCTGATAGCCCTCGTCCTTTCCCCCAC
TCGTGAACTTGCCACCCAGATTCAGTCCGTTATTATGGCCCTCGGTGATT
ACATGAACGTTCAGTGCCATGCTTGTATTGGAGGCACAAATATTGGAGAG
GATATCAGGAAGCTTGACTACGGCCAGCATGTCGTTTCGGGCACACCGGG
CAGAGTCGCCGATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCA
AGATGCTGGTTCTTGATGAAGCCGATGAACTACTCAACCGTGGATTCCGT
GAACAGATTTACGATGTCTACCGCTACCTTCCTCCTGCCACGCAAGTCGT
TGTCGTTTCCGCTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGT
TCATGACAGACCCCGTGCGTGTCCTGGTCAAGCGTGACGAGTTGACCCTC
GAAGGCATCAAGCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGGAAGTT
CGATACCCTTTGCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCA
TCTTCTGCAACACCCGTCGCAAGGTCGACTGGCTTACCGACAAGATGCGC
GAAGCCAACTTTACTGTGTCCAGTATGCACGGTGAAATGCCCCAGAAGGA
GCGTGACAGCATTATGCAGGATTTCCGCCAGGGTAATTCCCGTGTGCTTA
TCTCCACTGATGTCTGGGCTCGTGGTATCGATGTGCAGCAGGTGTCCCTC
GTCATCAACTACGATCTGCCCACTAACCGTGAAAACTACATCCACCGTAT
CGGTCGTAGTGGTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCA
CCAGCGATGACGTGCGCATCCTCCGCGACATTGAACTCTACTACTCCACT
CAGATTGATGAGATGCCCATGAATGGTATGTTGACACCATCTATATCACC
AAGACCGGATATAACTAACCCATTTTTCCAGTTGCCGATCTTCTGTCATA
AGCAATCTGTTTTATACCTAGCGTATCGACCAATATATCCAAAAAGAGGT
CGCCTACATCATCTGATGGCATCAGACTCGCGCATCCTAACAGTCTCATT
ACCTCGCTCCCTGCCTATACAAATGAACAAGGTGAACGAAAGGGCCAAAA
CACCATATTGGTGCACTATGAAGGGGCGGAAAATCGCGTGGAGGAAATGG
GAAAATTATCAAATTGGTTAGTTCACTCGTCACAATACTACAGTTTACAA
CCCCGGATCTGACGCCCTTCCAGTGTTGTCCGAGTAGGTGATTTGTCTAC
GGCGCTAACGCCAATCAATTAAGTGGCGTTGGTCCAGTCAGGATATATCA
TCGATTGTCATTCCACTTCTTACTTTATTTACTTTCGAATATTTCTTCTG
GCGTTTGATTTGTTCCGGGGTTTATATGCCATGTTTGGAGTTACTATTAT
TGTTACGATCGAGTGGAATTATCAACATTCAAGAGTTCTGTGTGGTCTGT
CTATACTAGTCTGACTGGCCATCCTTTCATCCACTAAAAGTACATTGGAT
CATCCACTTTATTCCACACTAGCAAGCATTATCCACTACCAGCTGCCCG
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Coding sequence (CDS) from alignment at ch4:3586296..3588344-

>KJC3_005743-T1 ID=KJC3_005743-T1|Name=KJC3_005743-T1|organism=Aspergillus niger KJC3|type=CDS|length=4800bp|location=Sequence derived from alignment at ch4:3586296..3588344- (Aspergillus niger KJC3)
TTGCCGATCTTCTGTCATAACCCTCGTCCTTTCCCCCACTCGTGAACTTG
CCACCCAGATTCAGTCCGTTATTATGGCCCTCGGTGATTACATGAACGTT
CAGTGCCATGCTTGTATTGGAGGCACAAATATTGGAGAGGATATCAGGAA
GCTTGACTACGGCCAGCATGTCGTTTCGGGCACACCGGGCAGAGTCGCCG
ATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCAAGATGCTGGTT
CTTGATGAAGCCGATGAACTACTCAACCGTGGATTCCGTGAACAGATTTA
CGATGTCTACCGCTACCTTCCTCCTGCCACGCAAGTCGTTGTCGTTTCCG
CTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGTTCATGACAGAC
CCCGTGCGTGTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGGCATCAA
GCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGGAAGTTCGATACCCTTT
GCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCATCTTCTGCAAC
ACCCGTCGCAAGGTCGACTGGCTTACCGACAAGATGCGCGAAGCCAACTT
TACTGTGTCCAGTATGCACGGTGAAATGCCCCAGAAGGAGCGTGACAGCA
TTATGCAGGATTTCCGCCAGGGTAATTCCCGTGTGCTTATCTCCACTGAT
GTCTGGGCTCGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCATCAACTA
CGATCTGCCCACTAACCGTGAAAACTACATCCACCGTATCGGTCGTAGTG
GTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCACCAGCGATGAC
GTGCGCATCCTCCGCGACATTGAACTCTACTACTCCACTCAGATTGATGA
GATGCCCATGAATGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTG
TTGCTCCTACCTTCGAGGACATGCACTTGAAGGAGAGCCTTCTCCGTGGT
ATCTACGCTTATGGCTACGAATCTCCGTCTGCAGTCCAGTCCCGTGCCAT
TGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTA
CTGGTAAGACCGCTACATTCTCGATTAGTATCCTCCAGGTCATCGATACC
GTCGTCCGCGAATCTCAGGATGGCGGACGGAATTGACAGACGCGCTGATG
TTGCCGATCTTCTGTCATAACCCTCGTCCTTTCCCCCACTCGTGAACTTG
CCACCCAGATTCAGTCCGTTATTATGGCCCTCGGTGATTACATGAACGTT
CAGTGCCATGCTTGTATTGGAGGCACAAATATTGGAGAGGATATCAGGAA
GCTTGACTACGGCCAGCATGTCGTTTCGGGCACACCGGGCAGAGTCGCCG
ATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCAAGATGCTGGTT
CTTGATGAAGCCGATGAACTACTCAACCGTGGATTCCGTGAACAGATTTA
CGATGTCTACCGCTACCTTCCTCCTGCCACGCAAGTCGTTGTCGTTTCCG
CTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGTTCATGACAGAC
CCCGTGCGTGTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGGCATCAA
GCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGGAAGTTCGATACCCTTT
GCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCATCTTCTGCAAC
ACCCGTCGCAAGGTCGACTGGCTTACCGACAAGATGCGCGAAGCCAACTT
TACTGTGTCCAGTATGCACGGTGAAATGCCCCAGAAGGAGCGTGACAGCA
TTATGCAGGATTTCCGCCAGGGTAATTCCCGTGTGCTTATCTCCACTGAT
GTCTGGGCTCGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCATCAACTA
CGATCTGCCCACTAACCGTGAAAACTACATCCACCGTATCGGTCGTAGTG
GTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCACCAGCGATGAC
GTGCGCATCCTCCGCGACATTGAACTCTACTACTCCACTCAGATTGATGA
GATGCCCATGAATGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTG
TTGCTCCTACCTTCGAGGACATGCACTTGAAGGAGAGCCTTCTCCGTGGT
ATCTACGCTTATGGCTACGAATCTCCGTCTGCAGTCCAGTCCCGTGCCAT
TGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTA
CTGGTAAGACCGCTACATTCTCGATTAGTATCCTCCAGGTCATCGATACC
GTCGTCCGCGAATCTCAGGATGGCGGACGGAATTGACAGACGCGCTGATG
TTGCCGATCTTCTGTCATAACCCTCGTCCTTTCCCCCACTCGTGAACTTG
CCACCCAGATTCAGTCCGTTATTATGGCCCTCGGTGATTACATGAACGTT
CAGTGCCATGCTTGTATTGGAGGCACAAATATTGGAGAGGATATCAGGAA
GCTTGACTACGGCCAGCATGTCGTTTCGGGCACACCGGGCAGAGTCGCCG
ATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCAAGATGCTGGTT
CTTGATGAAGCCGATGAACTACTCAACCGTGGATTCCGTGAACAGATTTA
CGATGTCTACCGCTACCTTCCTCCTGCCACGCAAGTCGTTGTCGTTTCCG
CTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGTTCATGACAGAC
CCCGTGCGTGTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGGCATCAA
GCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGGAAGTTCGATACCCTTT
GCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCATCTTCTGCAAC
ACCCGTCGCAAGGTCGACTGGCTTACCGACAAGATGCGCGAAGCCAACTT
TACTGTGTCCAGTATGCACGGTGAAATGCCCCAGAAGGAGCGTGACAGCA
TTATGCAGGATTTCCGCCAGGGTAATTCCCGTGTGCTTATCTCCACTGAT
GTCTGGGCTCGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCATCAACTA
CGATCTGCCCACTAACCGTGAAAACTACATCCACCGTATCGGTCGTAGTG
GTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCACCAGCGATGAC
GTGCGCATCCTCCGCGACATTGAACTCTACTACTCCACTCAGATTGATGA
GATGCCCATGAATGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTG
TTGCTCCTACCTTCGAGGACATGCACTTGAAGGAGAGCCTTCTCCGTGGT
ATCTACGCTTATGGCTACGAATCTCCGTCTGCAGTCCAGTCCCGTGCCAT
TGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTA
CTGGTAAGACCGCTACATTCTCGATTAGTATCCTCCAGGTCATCGATACC
GTCGTCCGCGAATCTCAGGATGGCGGACGGAATTGACAGACGCGCTGATG
TTGCCGATCTTCTGTCATAACCCTCGTCCTTTCCCCCACTCGTGAACTTG
CCACCCAGATTCAGTCCGTTATTATGGCCCTCGGTGATTACATGAACGTT
CAGTGCCATGCTTGTATTGGAGGCACAAATATTGGAGAGGATATCAGGAA
GCTTGACTACGGCCAGCATGTCGTTTCGGGCACACCGGGCAGAGTCGCCG
ATATGATTCGCAGACGTCATCTGCGCACCCGTCACATCAAGATGCTGGTT
CTTGATGAAGCCGATGAACTACTCAACCGTGGATTCCGTGAACAGATTTA
CGATGTCTACCGCTACCTTCCTCCTGCCACGCAAGTCGTTGTCGTTTCCG
CTACTCTCCCCTATGATGTGCTTGACATGACCACCAAGTTCATGACAGAC
CCCGTGCGTGTCCTGGTCAAGCGTGACGAGTTGACCCTCGAAGGCATCAA
GCAGTACTTCATCGCGGTGGAGAAGGAAGAGTGGAAGTTCGATACCCTTT
GCGACCTTTACGATACCTTGACTATCACCCAGGCGGTCATCTTCTGCAAC
ACCCGTCGCAAGGTCGACTGGCTTACCGACAAGATGCGCGAAGCCAACTT
TACTGTGTCCAGTATGCACGGTGAAATGCCCCAGAAGGAGCGTGACAGCA
TTATGCAGGATTTCCGCCAGGGTAATTCCCGTGTGCTTATCTCCACTGAT
GTCTGGGCTCGTGGTATCGATGTGCAGCAGGTGTCCCTCGTCATCAACTA
CGATCTGCCCACTAACCGTGAAAACTACATCCACCGTATCGGTCGTAGTG
GTCGTTTCGGTCGCAAGGGTGTTGCCATCAACTTCGTCACCAGCGATGAC
GTGCGCATCCTCCGCGACATTGAACTCTACTACTCCACTCAGATTGATGA
GATGCCCATGAATGACCGCATGGAGTTCAATACCTCGAAGGAGGTCACTG
TTGCTCCTACCTTCGAGGACATGCACTTGAAGGAGAGCCTTCTCCGTGGT
ATCTACGCTTATGGCTACGAATCTCCGTCTGCAGTCCAGTCCCGTGCCAT
TGTCCAGATCTGCAAAGGTCGCGATACCATTGCTCAGGCGCAATCCGGTA
CTGGTAAGACCGCTACATTCTCGATTAGTATCCTCCAGGTCATCGATACC
GTCGTCCGCGAATCTCAGGATGGCGGACGGAATTGACAGACGCGCTGATG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
FAL1KJC3_005743Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005743-T1KJC3_005743-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005743-T1.cdsKJC3_005743-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005743-T1.utr3p1KJC3_005743-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005743-T1.exon4KJC3_005743-T1.exon4Aspergillus niger KJC3exon
KJC3_005743-T1.exon3KJC3_005743-T1.exon3Aspergillus niger KJC3exon
KJC3_005743-T1.exon2KJC3_005743-T1.exon2Aspergillus niger KJC3exon
KJC3_005743-T1.exon1KJC3_005743-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005743-T1.utr5p1KJC3_005743-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR000629
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR014001
DBxrefInterPro:IPR001650
DBxrefPFAM:PF00271
DBxrefPFAM:PF00270
ProductRNA helicase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:3586296..3588344 -
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