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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:4208403..4209626+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_005939-T1 ID=KJC3_005939-T1|Name=KJC3_005939-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1224bp|location=Sequence derived from alignment at ch4:4208403..4209626+ (Aspergillus niger KJC3)
CAATAAATATGGTTAGAAACCTCATCCGAAACTTCGAGAAATAGCAACGC
AGGTTCGGCGTTACCCCCCCATACCCACGTGATTCCTATCAACTACATCA
CTTGCAAGGGTCAAGAACACCAACGATTTTCTCTCGATAACACCAACTAG
AAGTGCTATTCTAGCTCGAACGGGCAATAAGTCGTTACCATGGGTTCCGT
CGTTCTGCCACATCTGCGTACAGCCTGGCACGTCGACCAGGCTATCCTTT
CCGAGGAGGACAGACTTGTGGTGTGTATACATATCACCAAGTCATGGCTG
CGAAGCATATCATATCATACTAACCAAACGTATAAAGGTCATCCGATTCG
GTCGCGATCACGATGTCGACTGTACGACGTCACAAATCTCCCTGATCACA
CTATGGGTGTAAGCTAACGCAGTGAATCGCAGGCATGCGTCAGGACGAAG
TCCTTTTCAAGATCGCTGAACGTGTGAAGAGTACGTCAAGAAATCCTTTA
TCCATTCCTCCTTCCCAAAACGACTTTCTCCGGCAAGAAGAAATTCGCAG
TGACTAACCCCCAACCAGACTTCGCCGTAATCTACCTCTGCGACATCGAC
GAGGTACCCGAGTTCAACACGATGTACGAACTCTTCGACCCAATGACCAT
CATGTTTTTCTACCGGAATAAGCACATGATGTGCGATTTCGGCACAGGTA
ACAACAACAAGTTGAACTGGGTGCTTGAAGACAAGCAGGAGATGATCGAT
ATCATCGAGACCATCTACAAGGGCGCGAAGAAGGGACGTGGTCTGGTCGT
CAGCCCGAAGGGTAAGTCTATATACTGTCTTGATTGTCTTCTTACTGGCT
GGATGGTTTTGGCTGATGCATGATATCTGCTGTAGATTACTCGACGAGGT
ACCGTTACTGATGGTCCTGGATGTTGTGGGGTTGGTATCACCCGGGTTTT
TGCTATGATTTATGAATGGGTGGGCTTGCTCAGAGGCTCGTTAGAATTAA
GATGAATGTGATGTTCTCATTCTCAATCACTAGCGACTTTTGCTTGTAAT
TAGGAGCGCTGCGTGGGGTGTATCTTACTTTCGTAGTGACATTGCAGATA
AGCTAAAACTGTGGAAGGCGCCATTCAATATTATAGAACGTCAAATTCAT
GAGCATTCCCAGAGCCCATCAGTGAAGCTGAAATATTCATCAGTCTAAGT
TCTCCTACAGTGCGAAATCCTTCC back to topCoding sequence (CDS) from alignment at ch4:4208403..4209626+ >KJC3_005939-T1 ID=KJC3_005939-T1|Name=KJC3_005939-T1|organism=Aspergillus niger KJC3|type=CDS|length=2160bp|location=Sequence derived from alignment at ch4:4208403..4209626+ (Aspergillus niger KJC3)
ATGGGTTCCGTCGTTCTGCCACATCTGCGTACAGCCTGGCACGTCGACCA
GGCTATCCTTTCCGAGGAGGACAGACTTGTGGTCATCCGATTCGGTCGCG
ATCACGATGTCGACTGCATGCGTCAGGACGAAGTCCTTTTCAAGATCGCT
GAACGTGTGAAGAACTTCGCCGTAATCTACCTCTGCGACATCGACGAGGT
ACCCGAGTTCAACACGATGTACGAACTCTTCGACCCAATGACCATCATGT
TTTTCTACCGGAATAAGCACATGATGTGCGATTTCGGCACAGGTAACAAC
AACAAGTTGAACTGGGTGCTTGAAGACAAGCAGGAGATGATCGATATCAT
CGAGACCATCTACAAGGGCGCGAAGAAGGGACGTGGTCTGGTCGTCAGCC
CGAAGGATTACTCGACGAGGTACCGTTACTGAATGGGTTCCGTCGTTCTG
CCACATCTGCGTACAGCCTGGCACGTCGACCAGGCTATCCTTTCCGAGGA
GGACAGACTTGTGGTCATCCGATTCGGTCGCGATCACGATGTCGACTGCA
TGCGTCAGGACGAAGTCCTTTTCAAGATCGCTGAACGTGTGAAGAACTTC
GCCGTAATCTACCTCTGCGACATCGACGAGGTACCCGAGTTCAACACGAT
GTACGAACTCTTCGACCCAATGACCATCATGTTTTTCTACCGGAATAAGC
ACATGATGTGCGATTTCGGCACAGGTAACAACAACAAGTTGAACTGGGTG
CTTGAAGACAAGCAGGAGATGATCGATATCATCGAGACCATCTACAAGGG
CGCGAAGAAGGGACGTGGTCTGGTCGTCAGCCCGAAGGATTACTCGACGA
GGTACCGTTACTGAATGGGTTCCGTCGTTCTGCCACATCTGCGTACAGCC
TGGCACGTCGACCAGGCTATCCTTTCCGAGGAGGACAGACTTGTGGTCAT
CCGATTCGGTCGCGATCACGATGTCGACTGCATGCGTCAGGACGAAGTCC
TTTTCAAGATCGCTGAACGTGTGAAGAACTTCGCCGTAATCTACCTCTGC
GACATCGACGAGGTACCCGAGTTCAACACGATGTACGAACTCTTCGACCC
AATGACCATCATGTTTTTCTACCGGAATAAGCACATGATGTGCGATTTCG
GCACAGGTAACAACAACAAGTTGAACTGGGTGCTTGAAGACAAGCAGGAG
ATGATCGATATCATCGAGACCATCTACAAGGGCGCGAAGAAGGGACGTGG
TCTGGTCGTCAGCCCGAAGGATTACTCGACGAGGTACCGTTACTGAATGG
GTTCCGTCGTTCTGCCACATCTGCGTACAGCCTGGCACGTCGACCAGGCT
ATCCTTTCCGAGGAGGACAGACTTGTGGTCATCCGATTCGGTCGCGATCA
CGATGTCGACTGCATGCGTCAGGACGAAGTCCTTTTCAAGATCGCTGAAC
GTGTGAAGAACTTCGCCGTAATCTACCTCTGCGACATCGACGAGGTACCC
GAGTTCAACACGATGTACGAACTCTTCGACCCAATGACCATCATGTTTTT
CTACCGGAATAAGCACATGATGTGCGATTTCGGCACAGGTAACAACAACA
AGTTGAACTGGGTGCTTGAAGACAAGCAGGAGATGATCGATATCATCGAG
ACCATCTACAAGGGCGCGAAGAAGGGACGTGGTCTGGTCGTCAGCCCGAA
GGATTACTCGACGAGGTACCGTTACTGAATGGGTTCCGTCGTTCTGCCAC
ATCTGCGTACAGCCTGGCACGTCGACCAGGCTATCCTTTCCGAGGAGGAC
AGACTTGTGGTCATCCGATTCGGTCGCGATCACGATGTCGACTGCATGCG
TCAGGACGAAGTCCTTTTCAAGATCGCTGAACGTGTGAAGAACTTCGCCG
TAATCTACCTCTGCGACATCGACGAGGTACCCGAGTTCAACACGATGTAC
GAACTCTTCGACCCAATGACCATCATGTTTTTCTACCGGAATAAGCACAT
GATGTGCGATTTCGGCACAGGTAACAACAACAAGTTGAACTGGGTGCTTG
AAGACAAGCAGGAGATGATCGATATCATCGAGACCATCTACAAGGGCGCG
AAGAAGGGACGTGGTCTGGTCGTCAGCCCGAAGGATTACTCGACGAGGTA
CCGTTACTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0046540 | U4/U6 x U5 tri-snRNP complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005939-T1.utr5p1 | KJC3_005939-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_005939-T1.utr3p1 | KJC3_005939-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926506U |
| DBxref | InterPro:IPR036249 |
| DBxref | InterPro:IPR004123 |
| DBxref | PFAM:PF02966 |
| Product | Dimethyladenosine transferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:4208403..4209626 + |
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