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KJC3_005940-T1, KJC3_005940-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_005940-T1
Unique NameKJC3_005940-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4209732..4211088+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_005940-T1 ID=KJC3_005940-T1|Name=KJC3_005940-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1357bp|location=Sequence derived from alignment at ch4:4209732..4211088+ (Aspergillus niger KJC3)
TCATCGACTCATCTCTCCCACATCGCGAATCCCATTCAATTATCATCCAC
CACAACATATCAGATAATAAACAAATAATCCATCATGATCGATCACAACA
TCTTCGAAGACCTGCAGGCCAAGATTGACGAGGAGGCCGCGGTCCGCGAT
GTAAGTTGACCCGTGCCCGCGCCAAGCGCAGAGACAAAACCGAAAGCAAA
GCGCCGTTGTGTTAACAAGATGTACAGGAGCTTCACGATATTGTGCAGAC
GCTTGCTAGGAAGGGTACTTACCTACTCACCTATCCCTATATGAATTCTC
AGAATTGGGATAATCTCGATTTGAACTTCGTCGACTGACTATTAGGATCG
GATTATAGGAAGATCTACCCAGGCTATTCTGTCGCGAGCTCATTCTACTC
CCACTGATCAGTGTATGATTAACTCCTCTCTTCATATCCTGATGACCACG
TAGGCAAAATAGCTAATATGGACAGTGAAACCCGTTCTCGATGACGCAAC
CAAGGAGATCATCGCCCAGAGGGATGAAGTATCTCGGTTGAAGACTGTGG
CGGACAAGCACCCGTTTTACAAGTACAATGGGGTGTGGACGCGCGAGTTG
CAGAACCTTGTGCGTGCCCCTTCTGTTACTGGGGTTTGTTTATTGCAGAC
GAGAGCTAATTAGCCAATCAATAGGTCTCGTCGATCGAGCTGTGCGCTTG
GCTGGGCGGACTGGAAGAGTACAAGACGAACAGCTCCTCTTCGTTTCTGA
CGATAGAAGAGGTTGGAAATTTCTTGGGTGGTATGTTCTCACTTCCTTGT
ATTCATTAACAGTTTCGAATTGTGTAGTGGATTCGATTCTAATTAGGATG
ATATCTAGTCCCCGTGAATCTCAAGGAACAGGATGCCTTCCATCTCACTA
TTGAGGAGTATTTGCTTGCGCTAATTTCCATGGTCGAGGAGCTGGTCAGT
TTCTCCGTGCCCCATATTGATTTGTTATTGGACTACCATTTGCTGATAGA
AGATGTGGCAGGCCCGTCTGGCTGTCAACTCGGTCACTCTGGGTGACTAC
ACCCGGCCGGTGCAAATTGGCAACTTCATCAAGGATTTGTTTGCGGGCTT
CCAGTTGCTGAACCTGAAGAATGATATTTTGCGGAAGAGGAGTGATGGAA
TTAAATACAGTGTAAGTTTCTATCCGTGGGGTTGTAGATTCAGGGATGCT
AATGCCGTGGTACAGGTTAAGAAGGTGGAGGATGTCGTTTACGATCTCTC
TTTGCGCAACTTGATTCCCAAGGGTAGCGCTGCGGCGTAAATTTAACACA
GAGACTTAAATTAGCATATGATATGAACATGAAATAACGACACTGTCCAG
GACACGG
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Coding sequence (CDS) from alignment at ch4:4209732..4211088+

>KJC3_005940-T1 ID=KJC3_005940-T1|Name=KJC3_005940-T1|organism=Aspergillus niger KJC3|type=CDS|length=5664bp|location=Sequence derived from alignment at ch4:4209732..4211088+ (Aspergillus niger KJC3)
ATGATCGATCACAACATCTTCGAAGACCTGCAGGCCAAGATTGACGAGGA
GGCCGCGGTCCGCGATGAGCTTCACGATATTGTGCAGACGCTTGCTAGGA
AGGGAAGATCTACCCAGGCTATTCTGTCGCGAGCTCATTCTACTCCCACT
GATCAGTTGAAACCCGTTCTCGATGACGCAACCAAGGAGATCATCGCCCA
GAGGGATGAAGTATCTCGGTTGAAGACTGTGGCGGACAAGCACCCGTTTT
ACAAGTACAATGGGGTGTGGACGCGCGAGTTGCAGAACCTTGTCTCGTCG
ATCGAGCTGTGCGCTTGGCTGGGCGGACTGGAAGAGTACAAGACGAACAG
CTCCTCTTCGTTTCTGACGATAGAAGAGGTTGGAAATTTCTTGGGTGTCC
CCGTGAATCTCAAGGAACAGGATGCCTTCCATCTCACTATTGAGGAGTAT
TTGCTTGCGCTAATTTCCATGGTCGAGGAGCTGGCCCGTCTGGCTGTCAA
CTCGGTCACTCTGGGTGACTACACCCGGCCGGTGCAAATTGGCAACTTCA
TCAAGGATTTGTTTGCGGGCTTCCAGTTGCTGAACCTGAAGAATGATATT
TTGCGGAAGAGGAGTGATGGAATTAAATACAGTGTTAAGAAGGTGGAGGA
TGTCGTTTACGATCTCTCTTTGCGCAACTTGATTCCCAAGGGTAGCGCTG
CGGCGTAAATGATCGATCACAACATCTTCGAAGACCTGCAGGCCAAGATT
GACGAGGAGGCCGCGGTCCGCGATGAGCTTCACGATATTGTGCAGACGCT
TGCTAGGAAGGGAAGATCTACCCAGGCTATTCTGTCGCGAGCTCATTCTA
CTCCCACTGATCAGTTGAAACCCGTTCTCGATGACGCAACCAAGGAGATC
ATCGCCCAGAGGGATGAAGTATCTCGGTTGAAGACTGTGGCGGACAAGCA
CCCGTTTTACAAGTACAATGGGGTGTGGACGCGCGAGTTGCAGAACCTTG
TCTCGTCGATCGAGCTGTGCGCTTGGCTGGGCGGACTGGAAGAGTACAAG
ACGAACAGCTCCTCTTCGTTTCTGACGATAGAAGAGGTTGGAAATTTCTT
GGGTGTCCCCGTGAATCTCAAGGAACAGGATGCCTTCCATCTCACTATTG
AGGAGTATTTGCTTGCGCTAATTTCCATGGTCGAGGAGCTGGCCCGTCTG
GCTGTCAACTCGGTCACTCTGGGTGACTACACCCGGCCGGTGCAAATTGG
CAACTTCATCAAGGATTTGTTTGCGGGCTTCCAGTTGCTGAACCTGAAGA
ATGATATTTTGCGGAAGAGGAGTGATGGAATTAAATACAGTGTTAAGAAG
GTGGAGGATGTCGTTTACGATCTCTCTTTGCGCAACTTGATTCCCAAGGG
TAGCGCTGCGGCGTAAATGATCGATCACAACATCTTCGAAGACCTGCAGG
CCAAGATTGACGAGGAGGCCGCGGTCCGCGATGAGCTTCACGATATTGTG
CAGACGCTTGCTAGGAAGGGAAGATCTACCCAGGCTATTCTGTCGCGAGC
TCATTCTACTCCCACTGATCAGTTGAAACCCGTTCTCGATGACGCAACCA
AGGAGATCATCGCCCAGAGGGATGAAGTATCTCGGTTGAAGACTGTGGCG
GACAAGCACCCGTTTTACAAGTACAATGGGGTGTGGACGCGCGAGTTGCA
GAACCTTGTCTCGTCGATCGAGCTGTGCGCTTGGCTGGGCGGACTGGAAG
AGTACAAGACGAACAGCTCCTCTTCGTTTCTGACGATAGAAGAGGTTGGA
AATTTCTTGGGTGTCCCCGTGAATCTCAAGGAACAGGATGCCTTCCATCT
CACTATTGAGGAGTATTTGCTTGCGCTAATTTCCATGGTCGAGGAGCTGG
CCCGTCTGGCTGTCAACTCGGTCACTCTGGGTGACTACACCCGGCCGGTG
CAAATTGGCAACTTCATCAAGGATTTGTTTGCGGGCTTCCAGTTGCTGAA
CCTGAAGAATGATATTTTGCGGAAGAGGAGTGATGGAATTAAATACAGTG
TTAAGAAGGTGGAGGATGTCGTTTACGATCTCTCTTTGCGCAACTTGATT
CCCAAGGGTAGCGCTGCGGCGTAAATGATCGATCACAACATCTTCGAAGA
CCTGCAGGCCAAGATTGACGAGGAGGCCGCGGTCCGCGATGAGCTTCACG
ATATTGTGCAGACGCTTGCTAGGAAGGGAAGATCTACCCAGGCTATTCTG
TCGCGAGCTCATTCTACTCCCACTGATCAGTTGAAACCCGTTCTCGATGA
CGCAACCAAGGAGATCATCGCCCAGAGGGATGAAGTATCTCGGTTGAAGA
CTGTGGCGGACAAGCACCCGTTTTACAAGTACAATGGGGTGTGGACGCGC
GAGTTGCAGAACCTTGTCTCGTCGATCGAGCTGTGCGCTTGGCTGGGCGG
ACTGGAAGAGTACAAGACGAACAGCTCCTCTTCGTTTCTGACGATAGAAG
AGGTTGGAAATTTCTTGGGTGTCCCCGTGAATCTCAAGGAACAGGATGCC
TTCCATCTCACTATTGAGGAGTATTTGCTTGCGCTAATTTCCATGGTCGA
GGAGCTGGCCCGTCTGGCTGTCAACTCGGTCACTCTGGGTGACTACACCC
GGCCGGTGCAAATTGGCAACTTCATCAAGGATTTGTTTGCGGGCTTCCAG
TTGCTGAACCTGAAGAATGATATTTTGCGGAAGAGGAGTGATGGAATTAA
ATACAGTGTTAAGAAGGTGGAGGATGTCGTTTACGATCTCTCTTTGCGCA
ACTTGATTCCCAAGGGTAGCGCTGCGGCGTAAATGATCGATCACAACATC
TTCGAAGACCTGCAGGCCAAGATTGACGAGGAGGCCGCGGTCCGCGATGA
GCTTCACGATATTGTGCAGACGCTTGCTAGGAAGGGAAGATCTACCCAGG
CTATTCTGTCGCGAGCTCATTCTACTCCCACTGATCAGTTGAAACCCGTT
CTCGATGACGCAACCAAGGAGATCATCGCCCAGAGGGATGAAGTATCTCG
GTTGAAGACTGTGGCGGACAAGCACCCGTTTTACAAGTACAATGGGGTGT
GGACGCGCGAGTTGCAGAACCTTGTCTCGTCGATCGAGCTGTGCGCTTGG
CTGGGCGGACTGGAAGAGTACAAGACGAACAGCTCCTCTTCGTTTCTGAC
GATAGAAGAGGTTGGAAATTTCTTGGGTGTCCCCGTGAATCTCAAGGAAC
AGGATGCCTTCCATCTCACTATTGAGGAGTATTTGCTTGCGCTAATTTCC
ATGGTCGAGGAGCTGGCCCGTCTGGCTGTCAACTCGGTCACTCTGGGTGA
CTACACCCGGCCGGTGCAAATTGGCAACTTCATCAAGGATTTGTTTGCGG
GCTTCCAGTTGCTGAACCTGAAGAATGATATTTTGCGGAAGAGGAGTGAT
GGAATTAAATACAGTGTTAAGAAGGTGGAGGATGTCGTTTACGATCTCTC
TTTGCGCAACTTGATTCCCAAGGGTAGCGCTGCGGCGTAAATGATCGATC
ACAACATCTTCGAAGACCTGCAGGCCAAGATTGACGAGGAGGCCGCGGTC
CGCGATGAGCTTCACGATATTGTGCAGACGCTTGCTAGGAAGGGAAGATC
TACCCAGGCTATTCTGTCGCGAGCTCATTCTACTCCCACTGATCAGTTGA
AACCCGTTCTCGATGACGCAACCAAGGAGATCATCGCCCAGAGGGATGAA
GTATCTCGGTTGAAGACTGTGGCGGACAAGCACCCGTTTTACAAGTACAA
TGGGGTGTGGACGCGCGAGTTGCAGAACCTTGTCTCGTCGATCGAGCTGT
GCGCTTGGCTGGGCGGACTGGAAGAGTACAAGACGAACAGCTCCTCTTCG
TTTCTGACGATAGAAGAGGTTGGAAATTTCTTGGGTGTCCCCGTGAATCT
CAAGGAACAGGATGCCTTCCATCTCACTATTGAGGAGTATTTGCTTGCGC
TAATTTCCATGGTCGAGGAGCTGGCCCGTCTGGCTGTCAACTCGGTCACT
CTGGGTGACTACACCCGGCCGGTGCAAATTGGCAACTTCATCAAGGATTT
GTTTGCGGGCTTCCAGTTGCTGAACCTGAAGAATGATATTTTGCGGAAGA
GGAGTGATGGAATTAAATACAGTGTTAAGAAGGTGGAGGATGTCGTTTAC
GATCTCTCTTTGCGCAACTTGATTCCCAAGGGTAGCGCTGCGGCGTAAAT
GATCGATCACAACATCTTCGAAGACCTGCAGGCCAAGATTGACGAGGAGG
CCGCGGTCCGCGATGAGCTTCACGATATTGTGCAGACGCTTGCTAGGAAG
GGAAGATCTACCCAGGCTATTCTGTCGCGAGCTCATTCTACTCCCACTGA
TCAGTTGAAACCCGTTCTCGATGACGCAACCAAGGAGATCATCGCCCAGA
GGGATGAAGTATCTCGGTTGAAGACTGTGGCGGACAAGCACCCGTTTTAC
AAGTACAATGGGGTGTGGACGCGCGAGTTGCAGAACCTTGTCTCGTCGAT
CGAGCTGTGCGCTTGGCTGGGCGGACTGGAAGAGTACAAGACGAACAGCT
CCTCTTCGTTTCTGACGATAGAAGAGGTTGGAAATTTCTTGGGTGTCCCC
GTGAATCTCAAGGAACAGGATGCCTTCCATCTCACTATTGAGGAGTATTT
GCTTGCGCTAATTTCCATGGTCGAGGAGCTGGCCCGTCTGGCTGTCAACT
CGGTCACTCTGGGTGACTACACCCGGCCGGTGCAAATTGGCAACTTCATC
AAGGATTTGTTTGCGGGCTTCCAGTTGCTGAACCTGAAGAATGATATTTT
GCGGAAGAGGAGTGATGGAATTAAATACAGTGTTAAGAAGGTGGAGGATG
TCGTTTACGATCTCTCTTTGCGCAACTTGATTCCCAAGGGTAGCGCTGCG
GCGTAAATGATCGATCACAACATCTTCGAAGACCTGCAGGCCAAGATTGA
CGAGGAGGCCGCGGTCCGCGATGAGCTTCACGATATTGTGCAGACGCTTG
CTAGGAAGGGAAGATCTACCCAGGCTATTCTGTCGCGAGCTCATTCTACT
CCCACTGATCAGTTGAAACCCGTTCTCGATGACGCAACCAAGGAGATCAT
CGCCCAGAGGGATGAAGTATCTCGGTTGAAGACTGTGGCGGACAAGCACC
CGTTTTACAAGTACAATGGGGTGTGGACGCGCGAGTTGCAGAACCTTGTC
TCGTCGATCGAGCTGTGCGCTTGGCTGGGCGGACTGGAAGAGTACAAGAC
GAACAGCTCCTCTTCGTTTCTGACGATAGAAGAGGTTGGAAATTTCTTGG
GTGTCCCCGTGAATCTCAAGGAACAGGATGCCTTCCATCTCACTATTGAG
GAGTATTTGCTTGCGCTAATTTCCATGGTCGAGGAGCTGGCCCGTCTGGC
TGTCAACTCGGTCACTCTGGGTGACTACACCCGGCCGGTGCAAATTGGCA
ACTTCATCAAGGATTTGTTTGCGGGCTTCCAGTTGCTGAACCTGAAGAAT
GATATTTTGCGGAAGAGGAGTGATGGAATTAAATACAGTGTTAAGAAGGT
GGAGGATGTCGTTTACGATCTCTCTTTGCGCAACTTGATTCCCAAGGGTA
GCGCTGCGGCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
GO:0003723RNA binding
GO:0043565sequence-specific DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_005940KJC3_005940Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005940-T1KJC3_005940-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005940-T1.utr5p1KJC3_005940-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005940-T1.exon1KJC3_005940-T1.exon1Aspergillus niger KJC3exon
KJC3_005940-T1.exon2KJC3_005940-T1.exon2Aspergillus niger KJC3exon
KJC3_005940-T1.exon3KJC3_005940-T1.exon3Aspergillus niger KJC3exon
KJC3_005940-T1.exon4KJC3_005940-T1.exon4Aspergillus niger KJC3exon
KJC3_005940-T1.exon5KJC3_005940-T1.exon5Aspergillus niger KJC3exon
KJC3_005940-T1.exon6KJC3_005940-T1.exon6Aspergillus niger KJC3exon
KJC3_005940-T1.exon7KJC3_005940-T1.exon7Aspergillus niger KJC3exon
KJC3_005940-T1.exon8KJC3_005940-T1.exon8Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005940-T1.cdsKJC3_005940-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_005940-T1.utr3p1KJC3_005940-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036081
DBxrefInterPro:IPR033956
DBxrefInterPro:IPR016068
DBxrefInterPro:IPR016069
DBxrefInterPro:IPR002848
DBxrefPFAM:PF01997
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4209732..4211088 +
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