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KJC3_006170-T2, KJC3_006170-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006170-T2
Unique NameKJC3_006170-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:4898998..4900398+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006170-T2 ID=KJC3_006170-T2|Name=KJC3_006170-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1401bp|location=Sequence derived from alignment at ch4:4898998..4900398+ (Aspergillus niger KJC3)
AATACTGCCGCTTCCGCCAAAGAACTTTTCGCAGTTGCTCCCTCCACTTC
GTCTGTCCCTCTTTCTCCTCCAATTTTCCCCGCGGCATATACATTCTCGT
CCATCATGGCGCCTCTCGTTCCCTCGCAGGAGGAGCTTGATCGCAGAAGG
GTATGTTCCCTCTTCCGACCGTGGCTTCTTCTCTCTCTCTTACGTCCTTC
ATCATACTGACTGCATTGACTTCCAGATCGTCGACATCAACCCAGAGACC
GTCTCCAACATCCCCTCCACAGATTTTCCTGGTCACTGGCCCGGCGAGTC
GCACGAATGGTCCCTCGCAAAGTTCAAGAATGTACGTTGGTAGTACTCAA
GTGTCCGCGCTCAATTGCCCCTCCTCCCAGTCAAGCTTCATCAGCTTTAC
GCTCACACATCTTTTTTTTTCGCGAACAGGATCTCAAGATCGACTTCCAC
CGCAACGAGCGATTCGAATCCTCCTTCTCTCTCATCGGAGTCGACGCCTC
CATTGCCAATGCCTTCCGTCGCATTCTCATGGCTGAGGTGCCCAGCATCG
CCATCGAATACGTCTTCGTCCACAACAACACCTCTGTCATTCAGGATGAG
GTTCTCGCACAACGTCTGGGTCTGATTCCCCTCAAGGGTTCCGTGGAGGG
CATCAACTGGATGCGCTGGTTCAAGAAGCCTACCGACGACGATCCCAATG
GCAGCAGTCCCGCCGATTACAACACCATCGTCTTGCGCTTGGACGTCGAA
TGTACCAAGAACCCCAACGCGGATCCCGAGGAGACTGACCCCCGCAAACT
CTACAAGAATGCGCACGTCTACGCCAAAGATATCACATTCCACCCCGTCG
GTCGCCAGGAACAGTTCTTTGCTGGCGATGACGCAATTCAGCCCGTCAAC
CCGGACATCCTGGTCGCCAAGCTTCGTCCCGGTCAGGCGATTGAAATGGA
ACTTCACTGTATCAAGGGTATCGGTGCCGACCATGCCAAGTTCTCCCCTG
TCGCCACGGCCACCTACCGTCTACTACCCGACATCAAGATCCTCCGCCCC
ATCATCGGTGATGATGCCAAGAAGTTTGCCAAGTGCTTCCCCAGCGGTGT
CATTGGCCTCGAGAAGGTCACTCGTGAGGAGGCCAAGCAGAAGGACAGCG
GATATGAGGGCCACGAGGGCGAATTGAAGGCAGTTGTTGTGGATCCCTTC
AAGGATACCGTCAGCAGAGAGTGTCTGAGACACGAGGAGTTCCAGGGCAA
GGTCAAGCTCGGTCGCGTCCGCGACCACTTCATCTTCAACATCGAGAGTG
TTGGCCAATTCGAAAGCGACACCCTCTTCCTGGAGAGCGTCAAGGTGCTG
AAGCTGAAATGCGCAAGATGGAAGCGCGGCTTGACGGACCTTATGCGCTA
A
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Coding sequence (CDS) from alignment at ch4:4898998..4900398+

>KJC3_006170-T2 ID=KJC3_006170-T2|Name=KJC3_006170-T2|organism=Aspergillus niger KJC3|type=CDS|length=873bp|location=Sequence derived from alignment at ch4:4898998..4900398+ (Aspergillus niger KJC3)
ATGGCTGAGGTGCCCAGCATCGCCATCGAATACGTCTTCGTCCACAACAA
CACCTCTGTCATTCAGGATGAGGTTCTCGCACAACGTCTGGGTCTGATTC
CCCTCAAGGGTTCCGTGGAGGGCATCAACTGGATGCGCTGGTTCAAGAAG
CCTACCGACGACGATCCCAATGGCAGCAGTCCCGCCGATTACAACACCAT
CGTCTTGCGCTTGGACGTCGAATGTACCAAGAACCCCAACGCGGATCCCG
AGGAGACTGACCCCCGCAAACTCTACAAGAATGCGCACGTCTACGCCAAA
GATATCACATTCCACCCCGTCGGTCGCCAGGAACAGTTCTTTGCTGGCGA
TGACGCAATTCAGCCCGTCAACCCGGACATCCTGGTCGCCAAGCTTCGTC
CCGGTCAGGCGATTGAAATGGAACTTCACTGTATCAAGGGTATCGGTGCC
GACCATGCCAAGTTCTCCCCTGTCGCCACGGCCACCTACCGTCTACTACC
CGACATCAAGATCCTCCGCCCCATCATCGGTGATGATGCCAAGAAGTTTG
CCAAGTGCTTCCCCAGCGGTGTCATTGGCCTCGAGAAGGTCACTCGTGAG
GAGGCCAAGCAGAAGGACAGCGGATATGAGGGCCACGAGGGCGAATTGAA
GGCAGTTGTTGTGGATCCCTTCAAGGATACCGTCAGCAGAGAGTGTCTGA
GACACGAGGAGTTCCAGGGCAAGGTCAAGCTCGGTCGCGTCCGCGACCAC
TTCATCTTCAACATCGAGAGTGTTGGCCAATTCGAAAGCGACACCCTCTT
CCTGGAGAGCGTCAAGGTGCTGAAGCTGAAATGCGCAAGATGGAAGCGCG
GCTTGACGGACCTTATGCGCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006170KJC3_006170Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006170-T2KJC3_006170-T2-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006170-T2.utr5p1KJC3_006170-T2.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_006170-T2.utr5p2KJC3_006170-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_006170-T2.utr5p3KJC3_006170-T2.utr5p3Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006170-T2.exon1KJC3_006170-T2.exon1Aspergillus niger KJC3exon
KJC3_006170-T2.exon2KJC3_006170-T2.exon2Aspergillus niger KJC3exon
KJC3_006170-T2.exon3KJC3_006170-T2.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006170-T2.cdsKJC3_006170-T2.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR036603
DBxrefInterPro:IPR033901
DBxrefInterPro:IPR011262
DBxrefInterPro:IPR036643
DBxrefInterPro:IPR011263
DBxrefPFAM:PF01193
DBxrefPFAM:PF01000
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:4898998..4900398 +
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