|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch4:5573889..5577988+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006403-T1 ID=KJC3_006403-T1|Name=KJC3_006403-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4100bp|location=Sequence derived from alignment at ch4:5573889..5577988+ (Aspergillus niger KJC3)
CCAACTGTTATCATTCATCATCTCCTCTCCATCATCGTCATCTCCCTCAA
CCTCGGGGCGCTCCCTTCGTGCTCCATCATCTCTCAGAGCCCCCCAGGGC
TTCTCTTCACTTCTTCATATTTCTCTCACCCTGGCATTCACGTTCATTGG
CGGACAACTGTCTCGCCAACAACTCCCATACTTACCCGTCTCTAAGCTGC
AATAACTACGGTAGCCTCCGGTTAAGTCGTGGGGTCGCTTCCCCCCGAAT
GTCGTACGGCATTTAATCCCACTACACGTCCTTCCCTTTGTGGCTCCCTT
AAATAGGAATCGGCACCTGCTGGCTGGCTTCCAGATAGTTTCCCACGCCT
TTTAGGACTTTCTTAGCCGGGGAAATTGCTCTTCTTCACCCTGCCGACCT
CTCAGTTTCCGCCTTTGCCCAACGCTCGTTCGCAGCCGCCTGGACTCCGA
ACGGCCTACCAACACGGTGCGATCAGGCACGTTCACTTCCCAACGCCCGC
CTGCAGTAACACATCTGGACCTTGAATTGCAGACCGAGAACCATAATTTC
GCCCAAGGATTGAATTTATGTCATTTCACTGAAGACTGCCCAATGGTACG
TACCGCCTGAAACTATCAGGATCAATTCCAGGGTCCTCAGGAGTCGGGAC
CCTTCTTAGTGGCGTTGCCTGAGTGTATTGCCTGCAAGAGCTGTCTTATC
GGCCACCACTTCACTACTTGTTCGTGGTCGCGATTTCCCTGCCTTCACTT
CTGCCCATCGGACTGTGCCTGAAGTGAGTCACTGCTGTGTCTGCCATCTT
ACTAATGCTGGTTGTACCTTTAGTCATCCACCGTTCGATGGCAATAGGCG
GCTTATAGACTCCCATCGCCACGTCCTTGCGTTATTGTTACTATGGGACA
GTCTTCCTCTACGCAACGAAATCGTCGTCACAGTACCCCTCCAGAGCACT
TTCCCACTTTCCACGCGATCCGTGTCCGCAGAAACAGGGATGAAGCAATG
AATAACAGCTACAACACGGAGCAGACTGGGGAACACCAACCCCGGTCGGG
AACAGAGACAGACCATGACAACACTCCAACAGCTTTAGGAGCCCCCGTTC
ATCTCGACCCTTCTGCCGAGATATGGCATCCCAATATTTCAGGTGACGAA
CAACGACATATGAGAACAATACAAGAGGAGAACGACGCGCAATATGAGCC
GGGCCAGCGGGAATATCGCTCGGACATCTTTGCCCGAATGGCTGCGAGAA
GACAGTCAACCATGTCGCGATTGGGTTCCAGGATCCTTCCTAATTCGGTG
ATCCGTGGCTTGCTGAGCAGCGAAGAAGAAACACCAGCAGAAGGCCACGC
CCATCGCCATGGTATCGTGTCAAGGTCGATTCCAAGATCGGAAGCCACGC
ATACCAGCGCTCGTTTTAGCCCGTTCAATTCCCTCAGCTCGAGAAGCGTC
TCTAGGCGACGCTCTTTACGTGGGCCGTACTTCATCCCCCGCAATGAACC
AACTCTCTCGTCAGATCCCGCTCGTTCCGGCTCATTCCTCGACCCTACCA
CGGAGATCGCTCCAGAACCTACGCGAAGCTCATGGCGCCGCAGTGCTCGG
CTGCATCGTGTCCGGAATTCTCTGTCAGGACCCATTGGCCACATGTTCGG
CCAATCTTTTCCGAACGCATCGGCTCAAGAATCAGGACCAATCCCACAAC
CACCCCTGGATCCAGTCTCTAGTGAGGACACTGACGGCTTTCTTCCTTAT
ACAAGGTCAATGGATAGCCAGATGGACTTCGATGAGCCCCATGAGCTTGA
TTCGGTGGAACCTGCTGTAGGCAGTACTCGTCCTACCTCGCCCATGTCAT
CGCAGTCTGCACAAGGCCCACCTGGCTTACGGCAACTCCCGGGATTGCTG
CGAGCAAGACCGTCTCGAGCTATGCGTCGAGAGGAACAGACTCCTTTGTC
GCGTGTCCTTCAGCTGGCCGCTGCCGCCATTGCCGCTCAACTTTCTGGCA
CAGCTGGTCCCGTAATGCCCAACATCCAGGCTCTGGGCAATGATGGCCTT
GATGGTTCGTTGGATAATTTCATACAGAGCTTACAGCACGCCACGTCCAC
CCAGACGGCTCCCAACGAGGGAGAGAGTGCGGCAGGCGACAACAGTCCTC
CGACTCCGGTTAATTTCCTCAGAGTCTTCCGCTTTGCCAATTCTGACGGT
ACTCGACCCGGTGGTCCATTGAATCGTCCAACGACAAACGCTGAGAACAC
CGACAGCAACGGCAACGGAATGGATGTGGACAACCCTACTGATGGACCTG
AGGGACGTACTGTTACGCTCGTGGTGGTTGGAGTACGATCGGTCCCTTCC
GGAAATGGGCCTAGCGGCGATCAGCCAGCTAATCCAGGAACTGGACTGGA
TGCCTTGCTTCGCTTGCCGTTCCTAACGCCGGGGAGTCTAGCACGCAATC
ACGAGAACGGCTCTGGCTTTCCACCACGTCCAGATGGGCGGCCCAGGCTT
CCACCTATCCGGCTCCAGGGCGAGCAGCATCCTAGCGGACTTCCCACGGG
TAGTGACATTTCTTCACAAGGAGGACCAACCCCACTGCGGCGGCTGTCTG
ACGCGGGCACCCGGGTCCCATTAGGCTCACTGTCTGCAGCCCCTTCGGTG
CTTTCGGAAAGTCCTCCAGGCCCCCATCCTCCTCCTTCGACGCCAGCCGA
GCCGGGATTATCGGCCGTGTCATCTAGCGCGTCCACTCCTAGTCGGAGAC
CTTCGACTGCTTCGGCCATGTCACCAAGCACCCTACCCCCCATTGACACC
AATCGACCGATGCAGCCCACCGTTGAGCCTACTGAAGACGGTATCCCCCC
GAATACGCGCCAGCGACGTCGCAGTGATTCGGAATATGCGCGCCATCGTG
ACCTAGGGTCCGGTGCCGTCAGGCGTAACGGCGTTGTGGAACCTGACAAT
GCTGCACCCCCTACCGGAAGAAGCTGGCTGATCTACGTTGTCGGAACCAA
TCTTTCAGAGAATCACCCTGCCTTTGCAACGCCAAGTCTGTTCACTGATG
TAAGAAATCCCAAGTCTAAAATCGTTTTCCTCCCCAGCCTCTTTCTCTGT
TTGGTACGTTTTTGTGGCTAATAGGGTCTTTAGAATCCAACGTACGAAGA
CATGATCTTGCTCTCATCTCTGCTCGGGCCTGTCAAGCCACCTGTTGCGA
CCCAGGAAGATCTCTCTACGGCCGGTGGACTGTTCCGCCTTGTAGAGTAT
GCCGGCTCGCTAGTTGCAGAAGCTTTGGAAGGTGCTGGCGCCATCCAACT
TCCCGAAGGCGAGCGGTGCTTGATTTGTCTCAGTGACTACGAGGCGGCAG
AGGAGCTTCGGCAACTGACCAAGTGCAAGCATCTTTTCCACCGGGATTGC
ATTGATCAGGTTTGTGCATATATCTCCGCGGATGTTTTGGCACTCAACTG
ACATTATGCTAGTGGTTGACCACGGGCCGTAATTCATGCCCACTTTGCCG
AGGCCAGGGTGTGGCTGAGACGTCGAATAACCAACCCACTCCAGATGCAC
CTAGCGCAGCAGCAGCGTAACTATGTGGACATGCGCTACGCTAGTTATTC
TCTTTCGATTCATCATCTTTCTACATAAACTTGACTTATTTGAAGCTTAG
CATGAAGCGTCTTATCTCATACCCTAACGAACGTCTTTTACTGGTTTATT
TCCCACACTACGGATGGCAGGCACGGCGAAATTCTTTCTGTTTCTTGTTG
TCTTAAGCAAGTGGTCTTTTCTGGTCATGGCCCGTGGAAGATGGGTTCTC
AAGGAAGTCTAACAGCTGACGCGTGAGGCAATGTTAGAGTGGTTGCAATT
CTGTGGCTCACCGCAGTCTGCCCTACTTACAGGACCTACATGAGTCCATG
ATATCTGGTTCCTGTGACAAAACTTCAGTCTTTGAGTTCTCGTCTACTGG
TCTCATTCCTTTTGTATTATTCCCCTCTCTGGTTGAGCTACGGCTCTTGG
GCGATTGCGCATTGGTAGCAGGGGTTTCTGGGCCTGGCAGTCACGGGAAT
AGCAGTTAATTTGGTACATATTAGTTGAATACAGCCTGTTATTGAAAGTG
back to topCoding sequence (CDS) from alignment at ch4:5573889..5577988+ >KJC3_006403-T1 ID=KJC3_006403-T1|Name=KJC3_006403-T1|organism=Aspergillus niger KJC3|type=CDS|length=4950bp|location=Sequence derived from alignment at ch4:5573889..5577988+ (Aspergillus niger KJC3)
ATGGGACAGTCTTCCTCTACGCAACGAAATCGTCGTCACAGTACCCCTCC
AGAGCACTTTCCCACTTTCCACGCGATCCGTGTCCGCAGAAACAGGGATG
AAGCAATGAATAACAGCTACAACACGGAGCAGACTGGGGAACACCAACCC
CGGTCGGGAACAGAGACAGACCATGACAACACTCCAACAGCTTTAGGAGC
CCCCGTTCATCTCGACCCTTCTGCCGAGATATGGCATCCCAATATTTCAG
GTGACGAACAACGACATATGAGAACAATACAAGAGGAGAACGACGCGCAA
TATGAGCCGGGCCAGCGGGAATATCGCTCGGACATCTTTGCCCGAATGGC
TGCGAGAAGACAGTCAACCATGTCGCGATTGGGTTCCAGGATCCTTCCTA
ATTCGGTGATCCGTGGCTTGCTGAGCAGCGAAGAAGAAACACCAGCAGAA
GGCCACGCCCATCGCCATGGTATCGTGTCAAGGTCGATTCCAAGATCGGA
AGCCACGCATACCAGCGCTCGTTTTAGCCCGTTCAATTCCCTCAGCTCGA
GAAGCGTCTCTAGGCGACGCTCTTTACGTGGGCCGTACTTCATCCCCCGC
AATGAACCAACTCTCTCGTCAGATCCCGCTCGTTCCGGCTCATTCCTCGA
CCCTACCACGGAGATCGCTCCAGAACCTACGCGAAGCTCATGGCGCCGCA
GTGCTCGGCTGCATCGTGTCCGGAATTCTCTGTCAGGACCCATTGGCCAC
ATGTTCGGCCAATCTTTTCCGAACGCATCGGCTCAAGAATCAGGACCAAT
CCCACAACCACCCCTGGATCCAGTCTCTAGTGAGGACACTGACGGCTTTC
TTCCTTATACAAGGTCAATGGATAGCCAGATGGACTTCGATGAGCCCCAT
GAGCTTGATTCGGTGGAACCTGCTGTAGGCAGTACTCGTCCTACCTCGCC
CATGTCATCGCAGTCTGCACAAGGCCCACCTGGCTTACGGCAACTCCCGG
GATTGCTGCGAGCAAGACCGTCTCGAGCTATGCGTCGAGAGGAACAGACT
CCTTTGTCGCGTGTCCTTCAGCTGGCCGCTGCCGCCATTGCCGCTCAACT
TTCTGGCACAGCTGGTCCCGTAATGCCCAACATCCAGGCTCTGGGCAATG
ATGGCCTTGATGGTTCGTTGGATAATTTCATACAGAGCTTACAGCACGCC
ACGTCCACCCAGACGGCTCCCAACGAGGGAGAGAGTGCGGCAGGCGACAA
CAGTCCTCCGACTCCGGTTAATTTCCTCAGAGTCTTCCGCTTTGCCAATT
CTGACGGTACTCGACCCGGTGGTCCATTGAATCGTCCAACGACAAACGCT
GAGAACACCGACAGCAACGGCAACGGAATGGATGTGGACAACCCTACTGA
TGGACCTGAGGGACGTACTGTTACGCTCGTGGTGGTTGGAGTACGATCGG
TCCCTTCCGGAAATGGGCCTAGCGGCGATCAGCCAGCTAATCCAGGAACT
GGACTGGATGCCTTGCTTCGCTTGCCGTTCCTAACGCCGGGGAGTCTAGC
ACGCAATCACGAGAACGGCTCTGGCTTTCCACCACGTCCAGATGGGCGGC
CCAGGCTTCCACCTATCCGGCTCCAGGGCGAGCAGCATCCTAGCGGACTT
CCCACGGGTAGTGACATTTCTTCACAAGGAGGACCAACCCCACTGCGGCG
GCTGTCTGACGCGGGCACCCGGGTCCCATTAGGCTCACTGTCTGCAGCCC
CTTCGGTGCTTTCGGAAAGTCCTCCAGGCCCCCATCCTCCTCCTTCGACG
CCAGCCGAGCCGGGATTATCGGCCGTGTCATCTAGCGCGTCCACTCCTAG
TCGGAGACCTTCGACTGCTTCGGCCATGTCACCAAGCACCCTACCCCCCA
TTGACACCAATCGACCGATGCAGCCCACCGTTGAGCCTACTGAAGACGGT
ATCCCCCCGAATACGCGCCAGCGACGTCGCAGTGATTCGGAATATGCGCG
CCATCGTGACCTAGGGTCCGGTGCCGTCAGGCGTAACGGCGTTGTGGAAC
CTGACAATGCTGCACCCCCTACCGGAAGAAGCTGGCTGATCTACGTTGTC
GGAACCAATCTTTCAGAGAATCACCCTGCCTTTGCAACGCCAAGTCTGTT
CACTGATAATCCAACGTACGAAGACATGATCTTGCTCTCATCTCTGCTCG
GGCCTGTCAAGCCACCTGTTGCGACCCAGGAAGATCTCTCTACGGCCGGT
GGACTGTTCCGCCTTGTAGAGTATGCCGGCTCGCTAGTTGCAGAAGCTTT
GGAAGGTGCTGGCGCCATCCAACTTCCCGAAGGCGAGCGGTGCTTGATTT
GTCTCAGTGACTACGAGGCGGCAGAGGAGCTTCGGCAACTGACCAAGTGC
AAGCATCTTTTCCACCGGGATTGCATTGATCAGGTTTGTGCATATATCTC
CGCGGATGTTTTGGCACTCAACTGAATGGGACAGTCTTCCTCTACGCAAC
GAAATCGTCGTCACAGTACCCCTCCAGAGCACTTTCCCACTTTCCACGCG
ATCCGTGTCCGCAGAAACAGGGATGAAGCAATGAATAACAGCTACAACAC
GGAGCAGACTGGGGAACACCAACCCCGGTCGGGAACAGAGACAGACCATG
ACAACACTCCAACAGCTTTAGGAGCCCCCGTTCATCTCGACCCTTCTGCC
GAGATATGGCATCCCAATATTTCAGGTGACGAACAACGACATATGAGAAC
AATACAAGAGGAGAACGACGCGCAATATGAGCCGGGCCAGCGGGAATATC
GCTCGGACATCTTTGCCCGAATGGCTGCGAGAAGACAGTCAACCATGTCG
CGATTGGGTTCCAGGATCCTTCCTAATTCGGTGATCCGTGGCTTGCTGAG
CAGCGAAGAAGAAACACCAGCAGAAGGCCACGCCCATCGCCATGGTATCG
TGTCAAGGTCGATTCCAAGATCGGAAGCCACGCATACCAGCGCTCGTTTT
AGCCCGTTCAATTCCCTCAGCTCGAGAAGCGTCTCTAGGCGACGCTCTTT
ACGTGGGCCGTACTTCATCCCCCGCAATGAACCAACTCTCTCGTCAGATC
CCGCTCGTTCCGGCTCATTCCTCGACCCTACCACGGAGATCGCTCCAGAA
CCTACGCGAAGCTCATGGCGCCGCAGTGCTCGGCTGCATCGTGTCCGGAA
TTCTCTGTCAGGACCCATTGGCCACATGTTCGGCCAATCTTTTCCGAACG
CATCGGCTCAAGAATCAGGACCAATCCCACAACCACCCCTGGATCCAGTC
TCTAGTGAGGACACTGACGGCTTTCTTCCTTATACAAGGTCAATGGATAG
CCAGATGGACTTCGATGAGCCCCATGAGCTTGATTCGGTGGAACCTGCTG
TAGGCAGTACTCGTCCTACCTCGCCCATGTCATCGCAGTCTGCACAAGGC
CCACCTGGCTTACGGCAACTCCCGGGATTGCTGCGAGCAAGACCGTCTCG
AGCTATGCGTCGAGAGGAACAGACTCCTTTGTCGCGTGTCCTTCAGCTGG
CCGCTGCCGCCATTGCCGCTCAACTTTCTGGCACAGCTGGTCCCGTAATG
CCCAACATCCAGGCTCTGGGCAATGATGGCCTTGATGGTTCGTTGGATAA
TTTCATACAGAGCTTACAGCACGCCACGTCCACCCAGACGGCTCCCAACG
AGGGAGAGAGTGCGGCAGGCGACAACAGTCCTCCGACTCCGGTTAATTTC
CTCAGAGTCTTCCGCTTTGCCAATTCTGACGGTACTCGACCCGGTGGTCC
ATTGAATCGTCCAACGACAAACGCTGAGAACACCGACAGCAACGGCAACG
GAATGGATGTGGACAACCCTACTGATGGACCTGAGGGACGTACTGTTACG
CTCGTGGTGGTTGGAGTACGATCGGTCCCTTCCGGAAATGGGCCTAGCGG
CGATCAGCCAGCTAATCCAGGAACTGGACTGGATGCCTTGCTTCGCTTGC
CGTTCCTAACGCCGGGGAGTCTAGCACGCAATCACGAGAACGGCTCTGGC
TTTCCACCACGTCCAGATGGGCGGCCCAGGCTTCCACCTATCCGGCTCCA
GGGCGAGCAGCATCCTAGCGGACTTCCCACGGGTAGTGACATTTCTTCAC
AAGGAGGACCAACCCCACTGCGGCGGCTGTCTGACGCGGGCACCCGGGTC
CCATTAGGCTCACTGTCTGCAGCCCCTTCGGTGCTTTCGGAAAGTCCTCC
AGGCCCCCATCCTCCTCCTTCGACGCCAGCCGAGCCGGGATTATCGGCCG
TGTCATCTAGCGCGTCCACTCCTAGTCGGAGACCTTCGACTGCTTCGGCC
ATGTCACCAAGCACCCTACCCCCCATTGACACCAATCGACCGATGCAGCC
CACCGTTGAGCCTACTGAAGACGGTATCCCCCCGAATACGCGCCAGCGAC
GTCGCAGTGATTCGGAATATGCGCGCCATCGTGACCTAGGGTCCGGTGCC
GTCAGGCGTAACGGCGTTGTGGAACCTGACAATGCTGCACCCCCTACCGG
AAGAAGCTGGCTGATCTACGTTGTCGGAACCAATCTTTCAGAGAATCACC
CTGCCTTTGCAACGCCAAGTCTGTTCACTGATAATCCAACGTACGAAGAC
ATGATCTTGCTCTCATCTCTGCTCGGGCCTGTCAAGCCACCTGTTGCGAC
CCAGGAAGATCTCTCTACGGCCGGTGGACTGTTCCGCCTTGTAGAGTATG
CCGGCTCGCTAGTTGCAGAAGCTTTGGAAGGTGCTGGCGCCATCCAACTT
CCCGAAGGCGAGCGGTGCTTGATTTGTCTCAGTGACTACGAGGCGGCAGA
GGAGCTTCGGCAACTGACCAAGTGCAAGCATCTTTTCCACCGGGATTGCA
TTGATCAGGTTTGTGCATATATCTCCGCGGATGTTTTGGCACTCAACTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006403-T1.utr3p1 | KJC3_006403-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001841 |
| DBxref | InterPro:IPR013083 |
| DBxref | PFAM:PF13639 |
| DBxref | PFAM:PF17123 |
| DBxref | PFAM:PF12678 |
| DBxref | PFAM:PF13923 |
| DBxref | PFAM:PF00097 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch4 | supercontig | ch4:5573889..5577988 + |
|
