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KJC3_006417-T3, KJC3_006417-T3 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006417-T3
Unique NameKJC3_006417-T3
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5618335..5621787-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006417-T3 ID=KJC3_006417-T3|Name=KJC3_006417-T3|organism=Aspergillus niger KJC3|type=mRNA|length=3453bp|location=Sequence derived from alignment at ch4:5618335..5621787- (Aspergillus niger KJC3)
TTCTGCTTCATCCTTTCTCTCTCTCTCTCTGTGTCTTTTTCTCTCCTTCC
TCTCTTTCTCCCTCCTCCATCTCCTCGTCTTTGAAGGTTGTGTTACTACC
TTCAGACTTCTCTTTGTTGATTCCCTCGCTCCAGTCCCGTCTCCTCGTGG
TCTTGTTGGACGCCCCCGGTTTCTTCTAACCTCATAAAAAAAAACTTGTT
TTTTTCTTCCTTCACATAACATCATTATGTCTTCCTACGGCGGCGGCGGC
GGCTACCAGCGCGACTCCTACCGGTAAGCTATCCCTTTGCAATCAGAGCA
CTGGTCTAGATGGATTGCTGGAGCGCAAACCAGCCTTGTGGCTGTGCGAC
ATGAATCGCGACTCTGATCGCTTCCTGGCTATTCCAGCCTGCCTTGCGGT
CCGGTCTGTCACGCGATCCGGTCAACCTTCAACCCATCTAGTCCTATCGG
CTCTTCTCAACACTGCGTCGTGAATCTGTACCTCTCAAACGAACATGCTT
GCTAACTTGCCATATAGCTCCAGAAACGGTGGCGGCGGCGGCGGCTACGG
TAACGGTAACGGTTACTCCAACGGCGGAGGCTACGGTGGTGGTGGTGGTG
GTGGTGGTTACGGCGGTGGTGGCTATGGCGGCGGCGGCTACGGCGGCGGC
GGCTATGGTGGCAGAGGTGGTGGTGCCGGCGGTGCTGGCGGAGACCGCAT
GTCCAACCTGGGCGCCGGTCTGAAGAAGCAGGAATGGGATCTTGACTCCC
TGCCCAAGTTCGAGAAGTCCTTCTACAAGGAACACGCCGATGTCGCCGAG
CGCTCTCAGCGTGATGTTGACGAGTTCCGTAAGAAGCACGAGATGGCTGT
TCAGGGAAGAAACGTCCCTCGCCCTGTCGAGACCTTCGACGAGGCCGGTT
TCCCTCAATACGTTCTCAGCGAGGTCAAGGCCCAGGGCTTCGACCGCCCT
ACCGCTATTCAGTCTCAGGGTTGGCCCATGGCCCTCTCTGGTCGCGACGT
TGTCGGTATCGCTGAGACGGGTTCCGGAAAGACCCTGACCTACTGTCTTC
CTGCCATTGTTCACATCAACGCCCAGCCCCTCCTCGCCCCCGGTGACGGC
CCCATTGTCCTTATCCTCGCCCCCACCCGTGAATTGGCCGTTCAGATTCA
AGCCGAAATCTCCAAGTTCGGAAAGTCTTCCCGTATCCGCAACACCTGTG
TCTACGGTGGTGTCCCCAAGGGTCCTCAGATCCGTGACCTGAGCCGTGGT
GTGGAAGTCTGCATTGCGACTCCCGGTCGTCTGATTGACATGCTCGAGGC
TGGTCGCACCAACCTTCGTCGTGTCACCTACCTCGTTCTGGATGAGGCCG
ATCGCATGCTGGACATGGGTTTCGAGCCCCAGATCCGCAAGATCATCTCC
CAGATTCGCCCTGACCGTCAGACCTGCATGTGGTCCGCTACATGGCCCAA
GGAGGTCCGTCAGCTTGCGTCTGACTTCCTCAACGACTACATCCAGGTTA
ACATTGGTTCCATGGATCTGTCGGCCAACCACCGTATCACTCAGATCGTC
GAGGTCGTCTCGGACTTCGAGAAGCGCGACAAGATGATCAAGCACCTCGA
GAAGATCATGGAGAACCGTGCCAACAAGTGCCTTATCTTCACCGGCACCA
AGCGCATCGCTGACGAAATCACTCGCTTCCTCCGCCAGGACGGATGGCCG
GCACTTTGTAAGCTTCCTTGGATCCCAATACTGAAACAGCTATTTGCTAA
CCTGCGTTCCAGCTATTCACGGTGATAAGCAACAGCAAGAAAGAGATTGG
GTCTTGAACGAGTTCAAGACGGGCAAGAGCCCAATCATGGTGGCTACTGA
TGTGGCTTCCCGTGGTATCGGTATGAATAAATCGCAAACTCCCCCCTCCC
CTTCCCCCCCTTCCTCCCTTCCTTTCTTGCCTCCCGAGTCACCCTCACCC
ATATTGAGGTTGTGTGACCATGGCACGGTGCTTAACTCTCTTCCACCAAT
TGTTGGTGTGTATGACTCTTCCAGGCTTTGTCGGGTCTCCTGAAATGGTT
CTCAAGCCAGGAGAGCCTTGGACTCACAGTGCAGTGTAGCAGACGTATTA
CTCTTCTGTTTTGATTCACCATATCTACCTTTTGAAACTTGGCCGGTAGA
GGGAGGGAAAGCTCCTCTCTTACCGACTTGTTGAAGCTGCATTCCAAGGT
TGCTCTAGGACCACGATATCTGCCACCCTCGGACTCGTCTGTCACGGATC
TTTTGATGATTTAAGTCCGAGCGAGAGAGAGAGATGCATCAAGTCTCACG
ACTGAGAAAGGGCTCCTAAGCCACGTTGCTCATTTGACTAATGCTCTGTA
TGCTAACGTTACATATGTTTGAAGATGTGCGCGACATCACACACGTTCTC
AACTATGACTACCCCAACAACTCGGAGGACTACGTTCACCGTATTGGTAG
AACTGGTCGTGCCGGTGCTAAGGGTACCGCCATCACCTTCTTTACCACTG
ACAGTAAGTCGTTTCTTCCCTTATGAAACGCCTCTTCAGTACTAACATGT
CCATCTTGCAGACTCCAAGCAGGCTCGTGACTTGGTCACCATTCTCACTG
AGGCCAAGCAGCAGATTGACCCCCGTCTCGCCGAGATGGTCCGCTACAGT
GGCGGCGGTGGTCATGGCCACGGTGGCTATGGCCGCTGGGGTGGCCGTGG
TGGTGGCCGTGGCCGCGGCAACCACTTCACTGCTTCCAATGCTGCTCCTC
TTGGTGGCAACCGTCGCTGGTAACCTGACCTCGCTGCTCAGTTCACTCAC
TGAGCTTGTATTCCATTCTCACATCGGTAGACGTTCTTTTTCCTTCGCAT
GATTCCTTTTTCGTAACCACGGTACGGGCGGCGTTCGTCGATATCACGAT
AGACTATTCGCGTGTTTTGCTCAGTTTACAACAACAGGCTCCCCCGACAT
AGGGTGACCTCGAAACCTACACGATTGTGCACTGATATTTCTCATGGATA
CACGTTAATTATCTCATTCTTTGTTGTGGTTTATCAAACAAAAAAGTTAT
GTATCACTTGGCTTGTTCCCGGAACGGATGGGACTAGATAGTGTGTAGCT
TCACTTGCATGCTGATAATTGGAGAGAAACTGTACCTATCTGCTTCTGGT
TTTTTTAGCTTTATGAAATGGTCAATCGTTTTACCTCTTGACAAAATTGC
TGGGAGCACACCTTTACACCATCACAAGTTACCCTCTCAAGTCACCTACA
TGAAGTCCATGCACTTAGATAGTAATCTACAGGCTTGATCCCTGCTATCC
AGCCTCGATCTGCAACACCCCCTCCATCCACCAAGAAAAAGCAAAGGGAA
TACAACAGCAGCAGCAGCAGCACAAAGCACGCCCGAATGAAACAGGCGGT
AGCTGCATAACACCGCAGCAGCCACGCAGGAAGCAGAGACACCGGGTGAG
CGG
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Coding sequence (CDS) from alignment at ch4:5618335..5621787-

>KJC3_006417-T3 ID=KJC3_006417-T3|Name=KJC3_006417-T3|organism=Aspergillus niger KJC3|type=CDS|length=4554bp|location=Sequence derived from alignment at ch4:5618335..5621787- (Aspergillus niger KJC3)
CTATTCACGGTGATAAGCAACAGCAAGAAAGAGATTGGGTCTTGAACGAG
TTCAAGACGGGCAAGAGCCCAATCATGGTGGCTACTGATGTGGCTTCCCG
TGGTATCGGTATGAATAAATCGCAAACTCCCCCCTCCCCTTCCCCCCCTT
CCTCCCTTCCTTTCTTGCCTCCCGAGTCACCCTCACCCATATTGAGGTTG
TGTGACCATGGCACGGTGCTTAACTCTCTTCCACCAATTGTTGGTGTGTA
TGACTCTTCCAGGCTTTGTCGGGTCTCCTGACTCCAGAAACGGTGGCGGC
GGCGGCGGCTACGGTAACGGTAACGGTTACTCCAACGGCGGAGGCTACGG
TGGTGGTGGTGGTGGTGGTGGTTACGGCGGTGGTGGCTATGGCGGCGGCG
GCTACGGCGGCGGCGGCTATGGTGGCAGAGGTGGTGGTGCCGGCGGTGCT
GGCGGAGACCGCATGTCCAACCTGGGCGCCGGTCTGAAGAAGCAGGAATG
GGATCTTGACTCCCTGCCCAAGTTCGAGAAGTCCTTCTACAAGGAACACG
CCGATGTCGCCGAGCGCTCTCAGCGTGATGTTGACGAGTTCCGTAAGAAG
CACGAGATGGCTGTTCAGGGAAGAAACGTCCCTCGCCCTGTCGAGACCTT
CGACGAGGCCGGTTTCCCTCAATACGTTCTCAGCGAGGTCAAGGCCCAGG
GCTTCGACCGCCCTACCGCTATTCAGTCTCAGGGTTGGCCCATGGCCCTC
TCTGGTCGCGACGTTGTCGGTATCGCTGAGACGGGTTCCGGAAAGACCCT
GACCTACTGTCTTCCTGCCATTGTTCACATCAACGCCCAGCCCCTCCTCG
CCCCCGGTGACGGCCCCATTGTCCTTATCCTCGCCCCCACCCGTGAATTG
GCCGTTCAGATTCAAGCCGAAATCTCCAAGTTCGGAAAGTCTTCCCGTAT
CCGCAACACCTGTGTCTACGGTGGTGTCCCCAAGGGTCCTCAGATCCGTG
ACCTGAGCCGTGGTGTGGAAGTCTGCATTGCGACTCCCGGTCGTCTGATT
GACATGCTCGAGGCTGGTCGCACCAACCTTCGTCGTGTCACCTACCTCGT
TCTGGATGAGGCCGATCGCATGCTGGACATGGGTTTCGAGCCCCAGATCC
GCAAGATCATCTCCCAGATTCGCCCTGACCGTCAGACCTGCATGTGGTCC
GCTACATGGCCCAAGGAGGTCCGTCAGCTTGCGTCTGACTTCCTCAACGA
CTACATCCAGGTTAACATTGGTTCCATGGATCTGTCGGCCAACCACCGTA
TCACTCAGATCGTCGAGGTCGTCTCGGACTTCGAGAAGCGCGACAAGATG
ATCAAGCACCTCGAGAAGATCATGGAGAACCGTGCCAACAAGTGCCTTAT
CTTCACCGGCACCAAGCGCATCGCTGACGAAATCACTCGCTTCCTCCGCC
AGGACGGATGGCCGGCACTTTATGTCTTCCTACGGCGGCGGCGGCGGCTA
CCAGCGCGACTCCTACCGCTATTCACGGTGATAAGCAACAGCAAGAAAGA
GATTGGGTCTTGAACGAGTTCAAGACGGGCAAGAGCCCAATCATGGTGGC
TACTGATGTGGCTTCCCGTGGTATCGGTATGAATAAATCGCAAACTCCCC
CCTCCCCTTCCCCCCCTTCCTCCCTTCCTTTCTTGCCTCCCGAGTCACCC
TCACCCATATTGAGGTTGTGTGACCATGGCACGGTGCTTAACTCTCTTCC
ACCAATTGTTGGTGTGTATGACTCTTCCAGGCTTTGTCGGGTCTCCTGAC
TCCAGAAACGGTGGCGGCGGCGGCGGCTACGGTAACGGTAACGGTTACTC
CAACGGCGGAGGCTACGGTGGTGGTGGTGGTGGTGGTGGTTACGGCGGTG
GTGGCTATGGCGGCGGCGGCTACGGCGGCGGCGGCTATGGTGGCAGAGGT
GGTGGTGCCGGCGGTGCTGGCGGAGACCGCATGTCCAACCTGGGCGCCGG
TCTGAAGAAGCAGGAATGGGATCTTGACTCCCTGCCCAAGTTCGAGAAGT
CCTTCTACAAGGAACACGCCGATGTCGCCGAGCGCTCTCAGCGTGATGTT
GACGAGTTCCGTAAGAAGCACGAGATGGCTGTTCAGGGAAGAAACGTCCC
TCGCCCTGTCGAGACCTTCGACGAGGCCGGTTTCCCTCAATACGTTCTCA
GCGAGGTCAAGGCCCAGGGCTTCGACCGCCCTACCGCTATTCAGTCTCAG
GGTTGGCCCATGGCCCTCTCTGGTCGCGACGTTGTCGGTATCGCTGAGAC
GGGTTCCGGAAAGACCCTGACCTACTGTCTTCCTGCCATTGTTCACATCA
ACGCCCAGCCCCTCCTCGCCCCCGGTGACGGCCCCATTGTCCTTATCCTC
GCCCCCACCCGTGAATTGGCCGTTCAGATTCAAGCCGAAATCTCCAAGTT
CGGAAAGTCTTCCCGTATCCGCAACACCTGTGTCTACGGTGGTGTCCCCA
AGGGTCCTCAGATCCGTGACCTGAGCCGTGGTGTGGAAGTCTGCATTGCG
ACTCCCGGTCGTCTGATTGACATGCTCGAGGCTGGTCGCACCAACCTTCG
TCGTGTCACCTACCTCGTTCTGGATGAGGCCGATCGCATGCTGGACATGG
GTTTCGAGCCCCAGATCCGCAAGATCATCTCCCAGATTCGCCCTGACCGT
CAGACCTGCATGTGGTCCGCTACATGGCCCAAGGAGGTCCGTCAGCTTGC
GTCTGACTTCCTCAACGACTACATCCAGGTTAACATTGGTTCCATGGATC
TGTCGGCCAACCACCGTATCACTCAGATCGTCGAGGTCGTCTCGGACTTC
GAGAAGCGCGACAAGATGATCAAGCACCTCGAGAAGATCATGGAGAACCG
TGCCAACAAGTGCCTTATCTTCACCGGCACCAAGCGCATCGCTGACGAAA
TCACTCGCTTCCTCCGCCAGGACGGATGGCCGGCACTTTATGTCTTCCTA
CGGCGGCGGCGGCGGCTACCAGCGCGACTCCTACCGCTATTCACGGTGAT
AAGCAACAGCAAGAAAGAGATTGGGTCTTGAACGAGTTCAAGACGGGCAA
GAGCCCAATCATGGTGGCTACTGATGTGGCTTCCCGTGGTATCGGTATGA
ATAAATCGCAAACTCCCCCCTCCCCTTCCCCCCCTTCCTCCCTTCCTTTC
TTGCCTCCCGAGTCACCCTCACCCATATTGAGGTTGTGTGACCATGGCAC
GGTGCTTAACTCTCTTCCACCAATTGTTGGTGTGTATGACTCTTCCAGGC
TTTGTCGGGTCTCCTGACTCCAGAAACGGTGGCGGCGGCGGCGGCTACGG
TAACGGTAACGGTTACTCCAACGGCGGAGGCTACGGTGGTGGTGGTGGTG
GTGGTGGTTACGGCGGTGGTGGCTATGGCGGCGGCGGCTACGGCGGCGGC
GGCTATGGTGGCAGAGGTGGTGGTGCCGGCGGTGCTGGCGGAGACCGCAT
GTCCAACCTGGGCGCCGGTCTGAAGAAGCAGGAATGGGATCTTGACTCCC
TGCCCAAGTTCGAGAAGTCCTTCTACAAGGAACACGCCGATGTCGCCGAG
CGCTCTCAGCGTGATGTTGACGAGTTCCGTAAGAAGCACGAGATGGCTGT
TCAGGGAAGAAACGTCCCTCGCCCTGTCGAGACCTTCGACGAGGCCGGTT
TCCCTCAATACGTTCTCAGCGAGGTCAAGGCCCAGGGCTTCGACCGCCCT
ACCGCTATTCAGTCTCAGGGTTGGCCCATGGCCCTCTCTGGTCGCGACGT
TGTCGGTATCGCTGAGACGGGTTCCGGAAAGACCCTGACCTACTGTCTTC
CTGCCATTGTTCACATCAACGCCCAGCCCCTCCTCGCCCCCGGTGACGGC
CCCATTGTCCTTATCCTCGCCCCCACCCGTGAATTGGCCGTTCAGATTCA
AGCCGAAATCTCCAAGTTCGGAAAGTCTTCCCGTATCCGCAACACCTGTG
TCTACGGTGGTGTCCCCAAGGGTCCTCAGATCCGTGACCTGAGCCGTGGT
GTGGAAGTCTGCATTGCGACTCCCGGTCGTCTGATTGACATGCTCGAGGC
TGGTCGCACCAACCTTCGTCGTGTCACCTACCTCGTTCTGGATGAGGCCG
ATCGCATGCTGGACATGGGTTTCGAGCCCCAGATCCGCAAGATCATCTCC
CAGATTCGCCCTGACCGTCAGACCTGCATGTGGTCCGCTACATGGCCCAA
GGAGGTCCGTCAGCTTGCGTCTGACTTCCTCAACGACTACATCCAGGTTA
ACATTGGTTCCATGGATCTGTCGGCCAACCACCGTATCACTCAGATCGTC
GAGGTCGTCTCGGACTTCGAGAAGCGCGACAAGATGATCAAGCACCTCGA
GAAGATCATGGAGAACCGTGCCAACAAGTGCCTTATCTTCACCGGCACCA
AGCGCATCGCTGACGAAATCACTCGCTTCCTCCGCCAGGACGGATGGCCG
GCACTTTATGTCTTCCTACGGCGGCGGCGGCGGCTACCAGCGCGACTCCT
ACCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DBP2_1KJC3_006417Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006417-T3KJC3_006417-T3-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006417-T3.cdsKJC3_006417-T3.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006417-T3.utr3p2KJC3_006417-T3.utr3p2Aspergillus niger KJC3three_prime_UTR
KJC3_006417-T3.utr3p1KJC3_006417-T3.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006417-T3.exon4KJC3_006417-T3.exon4Aspergillus niger KJC3exon
KJC3_006417-T3.exon3KJC3_006417-T3.exon3Aspergillus niger KJC3exon
KJC3_006417-T3.exon2KJC3_006417-T3.exon2Aspergillus niger KJC3exon
KJC3_006417-T3.exon1KJC3_006417-T3.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006417-T3.utr5p1KJC3_006417-T3.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR000629
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR014001
DBxrefInterPro:IPR001650
DBxrefPFAM:PF00271
DBxrefPFAM:PF00270
Product variant 3
ProductATP-dependent RNA helicase dbp2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5618335..5621787 -
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