You are here

Home

KJC3_006480-T1, KJC3_006480-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006480-T1
Unique NameKJC3_006480-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch4:5825149..5827730+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006480-T1 ID=KJC3_006480-T1|Name=KJC3_006480-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2582bp|location=Sequence derived from alignment at ch4:5825149..5827730+ (Aspergillus niger KJC3)
TCAATCGAACCGGTTCATTCTCTGCTCTGCTCTGGTTTTGGGTCGCTCGA
TCAGGTACCGACACATACGTGTACTTCTCTGCCTGCCAGTCCACTCAGAA
CATCTGCCACTGTCGTCCAAGCCCAGGTCTCACTTGGGGTTGCATTGACG
ACCACTTACTTTCTACTAGAGAAAGCATCCATCACCTCTCGGTGAGTCGC
CCTCGTATTGCATTGACACATCCTCGCTGCTCTGCCCATGTTTCCCTGTC
GCGTCTCATCTTGTTTGGTCTTGTCTGGTTCTTGTTCTGGTCTATTCTGG
CCTGGCTATACATTGTTCAACATCTGCGAAACATCAGAAAACAGATGATT
ACATCCCCTCCCCCCCCTTCCCCTTTTATTTACATTAATTATCCCCGAGG
CCTCATCTATTCTGCCCGCGCACCATCGGGAAACCCCTGCTGGGTCAGTC
CAGGGAATAATCCCTAGGTCCGTCCGGGTTGCGCCAGATACCGCACCACC
GTTGGATTCACCGCGCCTTTTTTTCCTTGACTTAAAACCCATCGGCCCTG
AACATCTGCATTCAAAATGCTCCCATTGGCCCCGTCCTCGTGCTCCATGT
CGCGGGGAGATGTCCAAGTGGCGTCTGTCAGAGATGCGATAGGGGTGGAT
GTCCTGTGCCTTTCCGGAGTGCATGGCTCATCCTGAACACTGGCCCACGT
AGTCATTCTTAGCGGTGGATGATGGTAATCTGGCGCTGCTTCTGCCCATC
GAGAGGATCCCATCCCTCTTGACCTCCAGATGCGCTCATTCACTCCCCTC
ATCTCCTTCCCCCCTCTTCCCTGCCTCCGCAATTCCACCATCCACTGGGT
CATCCTGGGAAATAGCCAGATAACCCCCCCTCATCACTGTTACTCTGTTT
GAGTTTACTCCCAATCCATTATCTGGCTTTACCATAACACTACCTCTGCT
CCTCACTCTTGATCCGTTTCGAACTACCTTTGTTTCACCTTGCTTCACTC
CTGATCTGTGATCCCTCTTTGTCTGCCTGTCGCACAGTTTATCTTACTTG
CGCCTGCTTTATTATTTTATTCTGGTTGATCTATTTCCAAAATTCGTGCG
GCTGGGATTGTATCTCTGTTTTGCACTCTACATTGCACATTGCGTTCTCT
GTCATCAAGAATTTCGCGGGGATCTCATTAGCAGCCACAATGCTTTTGCG
TCGCTCACTACGTTCCCGCTTGGGGCGGGATGACCAGCCGAGCATGGATG
CTAACATGAACACCAGATCTACGAGAGCTGCCGCCCGGGCTGCTGTCTCC
ACCCCAGCGGTGACCATTTCACGCGTTGCATCTGAGTTGCACGGGAATTC
CACTCATAGGTCTATCCATTTGACAGTAAAGATGCCGTCCAGCAAACTTC
GTGAAGTTACCAGTGGTAGCACCCGAAGTGGTGCATCAACCAGACGTTCG
GTTAATGTCTTTACGGAGAATCCCATTGTGACGGGTCCCCGTACCAGCAG
ACCCAAAAAGAAGCTTGTGGAAGTGGACACAAGCGATGAAGATGACCTGG
AAGACCAGGAAGAAGATGAGGTGGACGACGATGAAGATGCGCCAGGTGAA
GACGACGATGACGTAGATGCCGATGGCGATTTAGACATGGATGATGCGCC
GCCCCAGCCACCAGTGTCAAAACGGCAGGCGAAAGCAGCGGCAGCGGCAG
CGCCGAGCGGGAAGGCCGTTAAAAGTGTAGAGGCAAAAGAGATGGAACTG
GATGATGACGACGAGGACGACGACGATGAGGAGCTCTCGGAGCTGGAGTC
AGACGCTGAAGGCGAGCCAGACGATCAAGACGAAAGTATGATGGCCAATG
GTGGCGCAGAGGATTTAGAAGGAGAAGAGGAGGAAGAGGATGACGACCTG
GACAGCGATGACGATACCCCGACCGCCGATCTGAGCAAGATGACCAAACG
GCAAAGGGGTAATCTGGGTAACGACTTCCTGCAACTTCCTATGGGTGAGT
CTTCATGTTCCGCATGGTCATTGAGAGCATCATTAGTCTGACTGAGAGCA
GAACCCCAGGTGAAAAAGCACCTGACGGCCGAGGAGCGCGCTATGCGTCG
TGCCGAAATGGCTCGTCGTAGAAAGAACCTCAGCGAGAAGCGGAATGAGG
AGGAGAAGGTACGTACCATCTAGGGTTCTGCAAACTGCAGCGGGGTGGGC
TTTTCTGTACTTCGAGTCGATGCTGACATGAGACTCACAGATGGACACCA
TCAACAGGCTTCTACGGAAGCAGGCACCCAAGCGACGAGGACGCATTCCA
GCTGCAGAGACAGCCGAAGCAGCTTCTGCAGAGCAGGAGGTCGCGGAACC
CGAGAAACCGGACCCGACGATGGTGAGGTGGGTAAGTGGCCGCGAAGGCA
GCCGAGTAGGTGTGCCAGAGGAATGGCTCGGTATACCTGCAGGGCGTGTC
TTTGATGGCAATGGCTCGGGCAAGCTCGTGCAAGAGGTATAACTGGCTAG
AATGGAAAGATGGGCGCATCTGGAGCTGGGCGTTTGAAATAGGTTTCTAG
GGAGGGTATAGGCTTCAATAATACTAGGGTTA
back to top

Coding sequence (CDS) from alignment at ch4:5825149..5827730+

>KJC3_006480-T1 ID=KJC3_006480-T1|Name=KJC3_006480-T1|organism=Aspergillus niger KJC3|type=CDS|length=2916bp|location=Sequence derived from alignment at ch4:5825149..5827730+ (Aspergillus niger KJC3)
ATGCCGTCCAGCAAACTTCGTGAAGTTACCAGTGGTAGCACCCGAAGTGG
TGCATCAACCAGACGTTCGGTTAATGTCTTTACGGAGAATCCCATTGTGA
CGGGTCCCCGTACCAGCAGACCCAAAAAGAAGCTTGTGGAAGTGGACACA
AGCGATGAAGATGACCTGGAAGACCAGGAAGAAGATGAGGTGGACGACGA
TGAAGATGCGCCAGGTGAAGACGACGATGACGTAGATGCCGATGGCGATT
TAGACATGGATGATGCGCCGCCCCAGCCACCAGTGTCAAAACGGCAGGCG
AAAGCAGCGGCAGCGGCAGCGCCGAGCGGGAAGGCCGTTAAAAGTGTAGA
GGCAAAAGAGATGGAACTGGATGATGACGACGAGGACGACGACGATGAGG
AGCTCTCGGAGCTGGAGTCAGACGCTGAAGGCGAGCCAGACGATCAAGAC
GAAAGTATGATGGCCAATGGTGGCGCAGAGGATTTAGAAGGAGAAGAGGA
GGAAGAGGATGACGACCTGGACAGCGATGACGATACCCCGACCGCCGATC
TGAGCAAGATGACCAAACGGCAAAGGGGTAATCTGGGTAACGACTTCCTG
CAACTTCCTATGGAACCCCAGGTGAAAAAGCACCTGACGGCCGAGGAGCG
CGCTATGCGTCGTGCCGAAATGGCTCGTCGTAGAAAGAACCTCAGCGAGA
AGCGGAATGAGGAGGAGAAGATGGACACCATCAACAGGCTTCTACGGAAG
CAGGCACCCAAGCGACGAGGACGCATTCCAGCTGCAGAGACAGCCGAAGC
AGCTTCTGCAGAGCAGGAGGTCGCGGAACCCGAGAAACCGGACCCGACGA
TGGTGAGGTGGGTAAGTGGCCGCGAAGGCAGCCGAGTAGGTGTGCCAGAG
GAATGGCTCGGTATACCTGCAGGGCGTGTCTTTGATGGCAATGGCTCGGG
CAAGCTCGTGCAAGAGGTATAAATGCCGTCCAGCAAACTTCGTGAAGTTA
CCAGTGGTAGCACCCGAAGTGGTGCATCAACCAGACGTTCGGTTAATGTC
TTTACGGAGAATCCCATTGTGACGGGTCCCCGTACCAGCAGACCCAAAAA
GAAGCTTGTGGAAGTGGACACAAGCGATGAAGATGACCTGGAAGACCAGG
AAGAAGATGAGGTGGACGACGATGAAGATGCGCCAGGTGAAGACGACGAT
GACGTAGATGCCGATGGCGATTTAGACATGGATGATGCGCCGCCCCAGCC
ACCAGTGTCAAAACGGCAGGCGAAAGCAGCGGCAGCGGCAGCGCCGAGCG
GGAAGGCCGTTAAAAGTGTAGAGGCAAAAGAGATGGAACTGGATGATGAC
GACGAGGACGACGACGATGAGGAGCTCTCGGAGCTGGAGTCAGACGCTGA
AGGCGAGCCAGACGATCAAGACGAAAGTATGATGGCCAATGGTGGCGCAG
AGGATTTAGAAGGAGAAGAGGAGGAAGAGGATGACGACCTGGACAGCGAT
GACGATACCCCGACCGCCGATCTGAGCAAGATGACCAAACGGCAAAGGGG
TAATCTGGGTAACGACTTCCTGCAACTTCCTATGGAACCCCAGGTGAAAA
AGCACCTGACGGCCGAGGAGCGCGCTATGCGTCGTGCCGAAATGGCTCGT
CGTAGAAAGAACCTCAGCGAGAAGCGGAATGAGGAGGAGAAGATGGACAC
CATCAACAGGCTTCTACGGAAGCAGGCACCCAAGCGACGAGGACGCATTC
CAGCTGCAGAGACAGCCGAAGCAGCTTCTGCAGAGCAGGAGGTCGCGGAA
CCCGAGAAACCGGACCCGACGATGGTGAGGTGGGTAAGTGGCCGCGAAGG
CAGCCGAGTAGGTGTGCCAGAGGAATGGCTCGGTATACCTGCAGGGCGTG
TCTTTGATGGCAATGGCTCGGGCAAGCTCGTGCAAGAGGTATAAATGCCG
TCCAGCAAACTTCGTGAAGTTACCAGTGGTAGCACCCGAAGTGGTGCATC
AACCAGACGTTCGGTTAATGTCTTTACGGAGAATCCCATTGTGACGGGTC
CCCGTACCAGCAGACCCAAAAAGAAGCTTGTGGAAGTGGACACAAGCGAT
GAAGATGACCTGGAAGACCAGGAAGAAGATGAGGTGGACGACGATGAAGA
TGCGCCAGGTGAAGACGACGATGACGTAGATGCCGATGGCGATTTAGACA
TGGATGATGCGCCGCCCCAGCCACCAGTGTCAAAACGGCAGGCGAAAGCA
GCGGCAGCGGCAGCGCCGAGCGGGAAGGCCGTTAAAAGTGTAGAGGCAAA
AGAGATGGAACTGGATGATGACGACGAGGACGACGACGATGAGGAGCTCT
CGGAGCTGGAGTCAGACGCTGAAGGCGAGCCAGACGATCAAGACGAAAGT
ATGATGGCCAATGGTGGCGCAGAGGATTTAGAAGGAGAAGAGGAGGAAGA
GGATGACGACCTGGACAGCGATGACGATACCCCGACCGCCGATCTGAGCA
AGATGACCAAACGGCAAAGGGGTAATCTGGGTAACGACTTCCTGCAACTT
CCTATGGAACCCCAGGTGAAAAAGCACCTGACGGCCGAGGAGCGCGCTAT
GCGTCGTGCCGAAATGGCTCGTCGTAGAAAGAACCTCAGCGAGAAGCGGA
ATGAGGAGGAGAAGATGGACACCATCAACAGGCTTCTACGGAAGCAGGCA
CCCAAGCGACGAGGACGCATTCCAGCTGCAGAGACAGCCGAAGCAGCTTC
TGCAGAGCAGGAGGTCGCGGAACCCGAGAAACCGGACCCGACGATGGTGA
GGTGGGTAAGTGGCCGCGAAGGCAGCCGAGTAGGTGTGCCAGAGGAATGG
CTCGGTATACCTGCAGGGCGTGTCTTTGATGGCAATGGCTCGGGCAAGCT
CGTGCAAGAGGTATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0031011Ino80 complex
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_006480KJC3_006480Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006480-T1KJC3_006480-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006480-T1.utr5p1KJC3_006480-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_006480-T1.utr5p2KJC3_006480-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006480-T1.exon1KJC3_006480-T1.exon1Aspergillus niger KJC3exon
KJC3_006480-T1.exon2KJC3_006480-T1.exon2Aspergillus niger KJC3exon
KJC3_006480-T1.exon3KJC3_006480-T1.exon3Aspergillus niger KJC3exon
KJC3_006480-T1.exon4KJC3_006480-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006480-T1.cdsKJC3_006480-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006480-T1.utr3p1KJC3_006480-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR006880
DBxrefPFAM:PF04795
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch4supercontigch4:5825149..5827730 +
Powered by Drupal