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KJC3_006879-T1, KJC3_006879-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006879-T1
Unique NameKJC3_006879-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:722500..723979+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006879-T1 ID=KJC3_006879-T1|Name=KJC3_006879-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1480bp|location=Sequence derived from alignment at ch5:722500..723979+ (Aspergillus niger KJC3)
CCGACAAGCCCAATCTTAGCATTTTGAGGTACGAGAACTCGAACTCTCCC
ACCACAAGGTCGCCAGGCGGAACTTTCTCAATACTAACGTCCAGGTTCCT
ATATAGACAGTCGCCATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCG
TGGATCCATTTTCAGTGAGTGCGACCGCAGAGATCCTGAAGCGAAATTCG
CAGCATCTCCAGATCAATTTTTACTGATACAATTTTTCGCTCGACAGCGG
CAAACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACTAC
GCCGAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCACGA
CCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTACA
AGTTCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACACC
GGTCAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAACGT
CCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGAGG
AGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACGTT
ACCGTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTTCC
CTCCGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGGTA
TCGTCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAGTATGTCTCCG
GAAATCTGGCTCCGTTGAATCACTCTTCGGAGAGAATACGGTTAAAGAAG
AGGACTTTGATGGCTAACTCATTCCCTACAGAGGCTTCTCGCGCCAAGCA
CAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGTTGCCA
TGAACCCCGTGGATCACGTAAGGCTCCCTTCAATGATTTTGTCGATTTAT
CTACAGATTCTGACATGTTTTCTCTACAGCCTCACGGTGGTGGTAACCAC
CAGCACATTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCA
AAAAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCC
AGAAGACCAAGGAGTAAGCGTGATATTGTGTGGAGTTTTCTTTGTGACGG
GTTGAAAATGCTCTTTTGCTATGAGGCATATGTACTTAGGCGACTGCGGA
TAATCTCCCACGCGTCCTTAGCGAATCTAGGTCGTGGCCACCAAATATTT
TCATGATGACCAAAGCAAAAGAAATGGGTTCAAAAAATTCAAACTCGGGT
GCATGTTTTTTGAGATATCCTATTTTAAACGGTAGAACTAGGAAGATCTT
TCCTGCAAGTCATCAGGTCCGTCAAAAGAAACCGTATTGCGGGATTCGTA
CAAGAATTGGTCTCTAGCTAGCCATGCGAGAGATTCAGAAGTAGACTTCG
AATCTGCAATTGCTGCTACTTTGCTCAGCC
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Coding sequence (CDS) from alignment at ch5:722500..723979+

>KJC3_006879-T1 ID=KJC3_006879-T1|Name=KJC3_006879-T1|organism=Aspergillus niger KJC3|type=CDS|length=3060bp|location=Sequence derived from alignment at ch5:722500..723979+ (Aspergillus niger KJC3)
ATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCAC
GGCAAACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACT
ACGCCGAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCAC
GACCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTA
CAAGTTCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACA
CCGGTCAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAAC
GTCCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGA
GGAGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACG
TTACCGTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTT
CCCTCCGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGG
TATCGTCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAAGGCTTCTC
GCGCCAAGCACAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGT
GGTGTTGCCATGAACCCCGTGGATCACCCTCACGGTGGTGGTAACCACCA
GCACATTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAA
AAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAG
AAGACCAAGGAGTAAATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCG
TGGATCCATTTTCACGGCAAACACCCGTCTCAACAAGGCTCCTGCCCAGT
TCCGCACCCTCGACTACGCCGAGCGTCATGGATACACTCGTGGTGTCGTG
AAGGAGATCATCCACGACCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCA
GTTCCGTCACCCCTACAAGTTCAAGACCATCACCGAGACCTTCATCGCCA
ACGAGGGCATGTACACCGGTCAATTCGTCTACGCCGGAAAGAACGCCGCC
CTGACTGTCGGAAACGTCCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGT
TGTGACCAACGTCGAGGAGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTA
CCTCCGGTAACTACGTTACCGTCATCGGCCACAACCCCGAGGAGGGCAAG
ACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAAGGTCGTCAAGAACACCGC
CCGTGGTATGATCGGTATCGTCGCTGGTGGTGGTCGTACCGACAAGCCTT
TGCTGAAGGCTTCTCGCGCCAAGCACAAGTTCGCTGTCAAGCGCAACTCT
TGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGTGGATCACCCTCACGG
TGGTGGTAACCACCAGCACATTGGTAAGGCCTCGACCATCTCCCGCTACG
CTGCCCAGGGTCAAAAAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTG
CTCCGTGGTACCCAGAAGACCAAGGAGTAAATGGGTCGCGTGATCCGCAA
CCAGAGGAAGGGTCGTGGATCCATTTTCACGGCAAACACCCGTCTCAACA
AGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCCGAGCGTCATGGATAC
ACTCGTGGTGTCGTGAAGGAGATCATCCACGACCCCGGCCGTGGTGCTCC
CCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGTTCAAGACCATCACCG
AGACCTTCATCGCCAACGAGGGCATGTACACCGGTCAATTCGTCTACGCC
GGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCTTCCCCTCGCCTCCGT
CCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGAAGGCTGGTGACCGTG
GTGCTCTTGGTCGTACCTCCGGTAACTACGTTACCGTCATCGGCCACAAC
CCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAAGGT
CGTCAAGAACACCGCCCGTGGTATGATCGGTATCGTCGCTGGTGGTGGTC
GTACCGACAAGCCTTTGCTGAAGGCTTCTCGCGCCAAGCACAAGTTCGCT
GTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGT
GGATCACCCTCACGGTGGTGGTAACCACCAGCACATTGGTAAGGCCTCGA
CCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCCGGTCTTATCGCTGCC
CGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGACCAAGGAGTAAATGGG
TCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCACGGCAA
ACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCC
GAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCACGACCC
CGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGT
TCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACACCGGT
CAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCT
TCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGA
AGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACGTTACC
GTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTC
CGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGGTATCG
TCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAAGGCTTCTCGCGCC
AAGCACAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGT
TGCCATGAACCCCGTGGATCACCCTCACGGTGGTGGTAACCACCAGCACA
TTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCC
GGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGAC
CAAGGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL2KJC3_006879Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006879-T1KJC3_006879-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006879-T1.utr5p1KJC3_006879-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_006879-T1.utr5p2KJC3_006879-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006879-T1.exon1KJC3_006879-T1.exon1Aspergillus niger KJC3exon
KJC3_006879-T1.exon2KJC3_006879-T1.exon2Aspergillus niger KJC3exon
KJC3_006879-T1.exon3KJC3_006879-T1.exon3Aspergillus niger KJC3exon
KJC3_006879-T1.exon4KJC3_006879-T1.exon4Aspergillus niger KJC3exon
KJC3_006879-T1.exon5KJC3_006879-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006879-T1.cdsKJC3_006879-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006879-T1.utr3p1KJC3_006879-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR022671
DBxrefInterPro:IPR014726
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR022666
DBxrefInterPro:IPR022669
DBxrefInterPro:IPR002171
DBxrefPFAM:PF03947
DBxrefPFAM:PF00181
Product60S ribosomal protein L2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:722500..723979 +
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