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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:943768..945188- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006946-T1 ID=KJC3_006946-T1|Name=KJC3_006946-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1421bp|location=Sequence derived from alignment at ch5:943768..945188- (Aspergillus niger KJC3)
ATGGCTGCGGAACTTACTTCAACTCGGCTCAATGCGGAGAACCATCTGCT
CTTGGTATTGAACTCTTCGCCCCCTACCTATTGCTGGCTTGCACCCCATT
CTGATACTAATTCTGTCGACTACTTGCAGGACCAACCTCTCCTGCGCTTA
CCACATGAGCTTGCACGTCGGAACTTCAAGTCTGTTCAGCGCCTCGTCGA
GCGAGAAAAGGAGTACGTCCTCCCCGCACTCAAGGAGACCGCCAATGCAT
CCTTATCAAATGAGCAAACGCCTGACCAAGCTCTTGCTGCGCTCGATGCT
ATGATTTCCCGCATGCAAGGCTTGAAACGGAAAATGGAGAATCTACATCA
GGAGGAAAGAAAAATTCAAGAGCAGTCCCGGAAGCGTATCCAGCACCTAG
AGAAACTTCACCAGATTCCTAGCTTGGCAGACGTCCAATACGATCAGTGG
GCGAGGGTCCGTTTGGACAGGCTCATGATAGATCATATGTTACGTTCCGG
ATATATCAAAAGTGCCCAGCAATTAGCTCGTGAAAAGGGGATCGAGGATC
TTGTAGATCTCAACGTTTTCGTTCAGTGTCAACGGATTGCCGAGAGCCTA
CGCACTGGTGAAACGAAGGATGCCCTGCAATGGTGTGGCGAGAATAAAGC
AGCGCTGAAGAAGAGTCAGGTTTGTCTAACATCCAACAATGATCACGGAG
CTATATGCCAGAGTCCAATTTTAACCCAAAATTACAGTATAATCTGGAAT
TCGAACTCCGATTGCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAA
GAGAGATTCAACGACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTA
TCTTGAGACACAGTCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTT
TTCCTCCGGACACCAAAGCTGAGCCGTACAAGGTAATGGGGATATTGAAC
ACACTCTCAGGAAAACTGTACAAACTAACTCACCCCTAGTCGATGTATGC
TCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCGCACTCACCATG
AGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCGCTCTGTCTGCG
GGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCCTATACCTCCTC
CAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCCAATTTGTTCGA
CCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTCACCACACGAAG
AGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGCAGGATTTACGG
CCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTGTGTTGAGGTTG
GTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACGAGGGTGATATG
AAGAAAGTCTACATCATGTAA back to topCoding sequence (CDS) from alignment at ch5:943768..945188- >KJC3_006946-T1 ID=KJC3_006946-T1|Name=KJC3_006946-T1|organism=Aspergillus niger KJC3|type=CDS|length=4884bp|location=Sequence derived from alignment at ch5:943768..945188- (Aspergillus niger KJC3)
TCGATGTATGCTCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCG
CACTCACCATGAGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCG
CTCTGTCTGCGGGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCC
TATACCTCCTCCAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCC
AATTTGTTCGACCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTC
ACCACACGAAGAGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGC
AGGATTTACGGCCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTG
TGTTGAGGTTGGTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACG
AGGGTGATATGAAGAAAGTCTACATCATGTAATATAATCTGGAATTCGAA
CTCCGATTGCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAAGAGAG
ATTCAACGACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTATCTTG
AGACACAGTCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTTTTCCT
CCGGACACCAAAGCTGAGCCGTACAAGGACCAACCTCTCCTGCGCTTACC
ACATGAGCTTGCACGTCGGAACTTCAAGTCTGTTCAGCGCCTCGTCGAGC
GAGAAAAGGAGTACGTCCTCCCCGCACTCAAGGAGACCGCCAATGCATCC
TTATCAAATGAGCAAACGCCTGACCAAGCTCTTGCTGCGCTCGATGCTAT
GATTTCCCGCATGCAAGGCTTGAAACGGAAAATGGAGAATCTACATCAGG
AGGAAAGAAAAATTCAAGAGCAGTCCCGGAAGCGTATCCAGCACCTAGAG
AAACTTCACCAGATTCCTAGCTTGGCAGACGTCCAATACGATCAGTGGGC
GAGGGTCCGTTTGGACAGGCTCATGATAGATCATATGTTACGTTCCGGAT
ATATCAAAAGTGCCCAGCAATTAGCTCGTGAAAAGGGGATCGAGGATCTT
GTAGATCTCAACGTTTTCGTTCAGTGTCAACGGATTGCCGAGAGCCTACG
CACTGGTGAAACGAAGGATGCCCTGCAATGGTGTGGCGAGAATAAAGCAG
CGCTGAAGAAGAGTCAGATGGCTGCGGAACTTACTTCAACTCGGCTCAAT
GCGGAGAACCATCTGCTCTTGTCGATGTATGCTCACGAGCGATGGGCCTA
TCTTTCCGACCTCTTTGTCCGCACTCACCATGAGCTTTTGTCACTATCTT
CTCGTCCTTTGTTACACATCGCTCTGTCTGCGGGATTGTCGGCTCTCAAA
ACTCCTTCGTGCCATTCGGCCTATACCTCCTCCAGTTCGAATTCGTTGTC
CACAACAACATCTGTTTGTCCAATTTGTTCGACCGAGCTTAACGAGCTCG
CACGTAACATGCCATATGCTCACCACACGAAGAGCTACGTTGAGAACGAC
CCGATTGTGCTCCCAAATGGCAGGATTTACGGCCAGCAACGGCTGTTGGA
GATGAGCAAGAAAGTCGGTTGTGTTGAGGTTGGTAAAGTAAAGGACCCTA
CGACAGGTGAAGTATTCAACGAGGGTGATATGAAGAAAGTCTACATCATG
TAATATAATCTGGAATTCGAACTCCGATTGCAGCAATACATTGAAATGGT
CAGGGCGGGGCATAAAGAGAGATTCAACGACGCTATGATCCACGCCAAAA
GATATCTAGCGCCTTATCTTGAGACACAGTCGGTGGAGATTCATCGAGCT
GCAGGACTCCTCGCTTTTCCTCCGGACACCAAAGCTGAGCCGTACAAGGA
CCAACCTCTCCTGCGCTTACCACATGAGCTTGCACGTCGGAACTTCAAGT
CTGTTCAGCGCCTCGTCGAGCGAGAAAAGGAGTACGTCCTCCCCGCACTC
AAGGAGACCGCCAATGCATCCTTATCAAATGAGCAAACGCCTGACCAAGC
TCTTGCTGCGCTCGATGCTATGATTTCCCGCATGCAAGGCTTGAAACGGA
AAATGGAGAATCTACATCAGGAGGAAAGAAAAATTCAAGAGCAGTCCCGG
AAGCGTATCCAGCACCTAGAGAAACTTCACCAGATTCCTAGCTTGGCAGA
CGTCCAATACGATCAGTGGGCGAGGGTCCGTTTGGACAGGCTCATGATAG
ATCATATGTTACGTTCCGGATATATCAAAAGTGCCCAGCAATTAGCTCGT
GAAAAGGGGATCGAGGATCTTGTAGATCTCAACGTTTTCGTTCAGTGTCA
ACGGATTGCCGAGAGCCTACGCACTGGTGAAACGAAGGATGCCCTGCAAT
GGTGTGGCGAGAATAAAGCAGCGCTGAAGAAGAGTCAGATGGCTGCGGAA
CTTACTTCAACTCGGCTCAATGCGGAGAACCATCTGCTCTTGTCGATGTA
TGCTCACGAGCGATGGGCCTATCTTTCCGACCTCTTTGTCCGCACTCACC
ATGAGCTTTTGTCACTATCTTCTCGTCCTTTGTTACACATCGCTCTGTCT
GCGGGATTGTCGGCTCTCAAAACTCCTTCGTGCCATTCGGCCTATACCTC
CTCCAGTTCGAATTCGTTGTCCACAACAACATCTGTTTGTCCAATTTGTT
CGACCGAGCTTAACGAGCTCGCACGTAACATGCCATATGCTCACCACACG
AAGAGCTACGTTGAGAACGACCCGATTGTGCTCCCAAATGGCAGGATTTA
CGGCCAGCAACGGCTGTTGGAGATGAGCAAGAAAGTCGGTTGTGTTGAGG
TTGGTAAAGTAAAGGACCCTACGACAGGTGAAGTATTCAACGAGGGTGAT
ATGAAGAAAGTCTACATCATGTAATATAATCTGGAATTCGAACTCCGATT
GCAGCAATACATTGAAATGGTCAGGGCGGGGCATAAAGAGAGATTCAACG
ACGCTATGATCCACGCCAAAAGATATCTAGCGCCTTATCTTGAGACACAG
TCGGTGGAGATTCATCGAGCTGCAGGACTCCTCGCTTTTCCTCCGGACAC
CAAAGCTGAGCCGTACAAGGACCAACCTCTCCTGCGCTTACCACATGAGC
TTGCACGTCGGAACTTCAAGTCTGTTCAGCGCCTCGTCGAGCGAGAAAAG
GAGTACGTCCTCCCCGCACTCAAGGAGACCGCCAATGCATCCTTATCAAA
TGAGCAAACGCCTGACCAAGCTCTTGCTGCGCTCGATGCTATGATTTCCC
GCATGCAAGGCTTGAAACGGAAAATGGAGAATCTACATCAGGAGGAAAGA
AAAATTCAAGAGCAGTCCCGGAAGCGTATCCAGCACCTAGAGAAACTTCA
CCAGATTCCTAGCTTGGCAGACGTCCAATACGATCAGTGGGCGAGGGTCC
GTTTGGACAGGCTCATGATAGATCATATGTTACGTTCCGGATATATCAAA
AGTGCCCAGCAATTAGCTCGTGAAAAGGGGATCGAGGATCTTGTAGATCT
CAACGTTTTCGTTCAGTGTCAACGGATTGCCGAGAGCCTACGCACTGGTG
AAACGAAGGATGCCCTGCAATGGTGTGGCGAGAATAAAGCAGCGCTGAAG
AAGAGTCAGATGGCTGCGGAACTTACTTCAACTCGGCTCAATGCGGAGAA
CCATCTGCTCTTGTCGATGTATGCTCACGAGCGATGGGCCTATCTTTCCG
ACCTCTTTGTCCGCACTCACCATGAGCTTTTGTCACTATCTTCTCGTCCT
TTGTTACACATCGCTCTGTCTGCGGGATTGTCGGCTCTCAAAACTCCTTC
GTGCCATTCGGCCTATACCTCCTCCAGTTCGAATTCGTTGTCCACAACAA
CATCTGTTTGTCCAATTTGTTCGACCGAGCTTAACGAGCTCGCACGTAAC
ATGCCATATGCTCACCACACGAAGAGCTACGTTGAGAACGACCCGATTGT
GCTCCCAAATGGCAGGATTTACGGCCAGCAACGGCTGTTGGAGATGAGCA
AGAAAGTCGGTTGTGTTGAGGTTGGTAAAGTAAAGGACCCTACGACAGGT
GAAGTATTCAACGAGGGTGATATGAAGAAAGTCTACATCATGTAATATAA
TCTGGAATTCGAACTCCGATTGCAGCAATACATTGAAATGGTCAGGGCGG
GGCATAAAGAGAGATTCAACGACGCTATGATCCACGCCAAAAGATATCTA
GCGCCTTATCTTGAGACACAGTCGGTGGAGATTCATCGAGCTGCAGGACT
CCTCGCTTTTCCTCCGGACACCAAAGCTGAGCCGTACAAGGACCAACCTC
TCCTGCGCTTACCACATGAGCTTGCACGTCGGAACTTCAAGTCTGTTCAG
CGCCTCGTCGAGCGAGAAAAGGAGTACGTCCTCCCCGCACTCAAGGAGAC
CGCCAATGCATCCTTATCAAATGAGCAAACGCCTGACCAAGCTCTTGCTG
CGCTCGATGCTATGATTTCCCGCATGCAAGGCTTGAAACGGAAAATGGAG
AATCTACATCAGGAGGAAAGAAAAATTCAAGAGCAGTCCCGGAAGCGTAT
CCAGCACCTAGAGAAACTTCACCAGATTCCTAGCTTGGCAGACGTCCAAT
ACGATCAGTGGGCGAGGGTCCGTTTGGACAGGCTCATGATAGATCATATG
TTACGTTCCGGATATATCAAAAGTGCCCAGCAATTAGCTCGTGAAAAGGG
GATCGAGGATCTTGTAGATCTCAACGTTTTCGTTCAGTGTCAACGGATTG
CCGAGAGCCTACGCACTGGTGAAACGAAGGATGCCCTGCAATGGTGTGGC
GAGAATAAAGCAGCGCTGAAGAAGAGTCAGATGGCTGCGGAACTTACTTC
AACTCGGCTCAATGCGGAGAACCATCTGCTCTTG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261O7R |
| DBxref | InterPro:IPR006594 |
| DBxref | InterPro:IPR024964 |
| DBxref | InterPro:IPR013144 |
| DBxref | InterPro:IPR006595 |
| DBxref | PFAM:PF10607 |
| Product | GID complex subunit containing RING finger motif |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| ch5 | supercontig | ch5:943768..945188 - |
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