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KJC3_006954-T1, KJC3_006954-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006954-T1
Unique NameKJC3_006954-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:959509..960771+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006954-T1 ID=KJC3_006954-T1|Name=KJC3_006954-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1263bp|location=Sequence derived from alignment at ch5:959509..960771+ (Aspergillus niger KJC3)
CCAAGAGATCCAAACCATCCGACACGGAGGGCAGGTCAGGTGACCCACAG
AGTCAACCGTAGGGTTTTCATTAAGCGAATACCTTCCAAATAATTCGACA
CTCGACACTGCGACAATCAACACGACAGCGCCGGACGATAGCCATGGCTC
CCAAGGTGGAAAACAAGCAAGGTAGGTACAATTTATGCGATTCATCCGTC
TTCTTGAAATTTGCAGATTTGTTCTTGTCGAAAACCCGGTTTTGTGATCC
TCGAATGGCATCTACATGTGGCGGTACTTCGGGGGATAAGGCCCTCTCAG
CACGAACGAAAAAAAGGCATTCCCGATGAACGATTCGAGCCCTGTGTTTC
CCCCGTTATTGTCAACTTGCATGGATTTTATTTCGAGCGAGCGATGGGCT
ATATTTTATTTTGAAGTGACGGACGGGCTGACATTCTGGATCTATAGGCA
AGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGTCATTAAG
GGTGCTGGCGTACGTTCTCACAAGGCTTCAAATCCGCCCATGCTCTGTTC
GGTGCTAAATGTCATATAATTTTTCCAGGCGCACAAGGCTCGTAAGGTCC
GCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCCGGTCG
CCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGATGCGCA
CAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGAAGATCG
AGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAACAAGCGC
CAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCGTCAAGGT
CAACACTCTCGTCAGGTACGACGACCTATCCCATAATCATTGATGTACTA
CAGAAGTCGGAATATCTAACCTTCCTTTAGGCCCGATGGACTGAAGAAGG
CCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACC
AAGCTTGCCATCGTCTAGATACATTTCATTTAGGGTTTGGGTGAATTTTT
ATTTTGCGCGGTGGTCCATAAATATCAGTCATAAAGTTAGCTGCCAATGC
TTGAATGAGGGCTGAATGATCGTTTCCAAAAAAGAAAGAAGAGGGAATTA
CTCAAATGCATGAATACCACGAATAAATCTGGTTCTAGACCCGTAGATTT
TAAGCCATCGCCGTGGACTCTAGCTTAGGCTACTTGCCTTTCCTAGACCC
AGTGTAAGTCGAG
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Coding sequence (CDS) from alignment at ch5:959509..960771+

>KJC3_006954-T1 ID=KJC3_006954-T1|Name=KJC3_006954-T1|organism=Aspergillus niger KJC3|type=CDS|length=1860bp|location=Sequence derived from alignment at ch5:959509..960771+ (Aspergillus niger KJC3)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAA
GGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGCGCACAAGG
CTCGTAAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAG
CTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCG
CCTCGATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCA
TGAAGAAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAG
TCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGA
CACCGTCAAGGTCAACACTCTCGTCAGGCCCGATGGACTGAAGAAGGCCT
TCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAG
CTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAACAAGCAAGGCAAGAC
CAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTG
CTGGCGCGCACAAGGCTCGTAAGGTCCGCACCTCTACGACCTTCCACCGC
CCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGAT
CCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCATCCTCTACCCTCTCA
ACACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAACACCCTGGTCTTC
ATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAA
GCTGTATGACGTTGACACCGTCAAGGTCAACACTCTCGTCAGGCCCGATG
GACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGAC
ATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGCTCCCAAGGTGGAAAA
CAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGG
CAGTCATTAAGGGTGCTGGCGCGCACAAGGCTCGTAAGGTCCGCACCTCT
ACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTA
CCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCA
TCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGAAGATCGAGGAGAAC
AACACCCTGGTCTTCATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAA
GCTCGCCCTCAAGAAGCTGTATGACGTTGACACCGTCAAGGTCAACACTC
TCGTCAGGCCCGATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGAC
GTTGATGCTCTGGACATCGCTGCCACCAAGCTTGCCATCGTCTAGATGGC
TCCCAAGGTGGAAAACAAGCAAGGCAAGACCAAGCCCAGCGACAAGGCTG
GTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCG
ATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAG
AAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAA
CAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCG
TCAAGGTCAACACTCTCGTCAGGCCCGATGGACTGAAGAAGGCCTTCGCC
CGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAGCTTGC
CATCGTCTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23AKJC3_006954Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006954-T1KJC3_006954-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006954-T1.utr5p1KJC3_006954-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006954-T1.exon1KJC3_006954-T1.exon1Aspergillus niger KJC3exon
KJC3_006954-T1.exon2KJC3_006954-T1.exon2Aspergillus niger KJC3exon
KJC3_006954-T1.exon3KJC3_006954-T1.exon3Aspergillus niger KJC3exon
KJC3_006954-T1.exon4KJC3_006954-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006954-T1.cdsKJC3_006954-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006954-T1.utr3p1KJC3_006954-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092657YR
DBxrefInterPro:IPR012678
DBxrefInterPro:IPR013025
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR005633
DBxrefPFAM:PF03939
DBxrefPFAM:PF00276
Product60S ribosomal protein L23A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:959509..960771 +
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