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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2159407..2160715- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007327-T1 ID=KJC3_007327-T1|Name=KJC3_007327-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1309bp|location=Sequence derived from alignment at ch5:2159407..2160715- (Aspergillus niger KJC3)
ATGGCGGGGATGCGGAGGGGCGGCGTGGGGGTCGCCCTTTTCTTCCCCTC
CTCCCCTCCTTCCTCTTTACCAGCTTTATCCTCGTTTCCTTGTAGTCTAT
CTGTCTTCTTCTTCTCTTCTTTACCCTCACGTAGGCTCTACATATCTCAT
TCCCTCCAATTCTCTTCGTATATTGCCAAAATGGGTTCGACTTCGACCGT
CGCAGACACCCGCTTCAAGCTGAACACCGGGGCTGAGATCCCTGCTCTCG
GACTCGGTATGATACATCTTCAGATAGTAACCACAAGGATATTCTGGCTA
ACGTCTGTGCAGGAACCTGGCAGTCAGGCCCTGGAGAGGTCGAAAAGGCC
GTGGCACATGCCATCTCCGTTGGATACAGACACATTGATACCGCTTTTGC
TTACGGAAACGAAGGAGAAGTCGGCAAGGGTATCAAGGCAGCCATCGAGT
CTGGAGTTGTCAAGCGAGAGGACCTCTTTGTCACAACTAAGCTCTGGAGC
ACATGGCACTACCGAGTGGAACAGGCTCTGGACCAGAGCTTGAAGAACTT
GGGGCTGGACTATGTTGATCTCTACCTGGTCCACTGGCCGGTGGCTATGA
ACCCTAATGGTGAGTCCTCCACTAATTTAGACTCAAGGCGATGCGCATGT
TGACATTACAAAGGAAACCACCCCAATATTCCCACCCTTCCCGACGGTTC
CCGCGACCTGCACCTCAACCACTCCCATATCAACACTTGGAAGGATATGG
AGAAGCTTGTCGGTAGCGGAAAGACCAAGGCCATTGGTGTTTGCAACTAC
AGCAGGCCCTACCTTGAGGAGCTCCTCGCCCAAGCCACCGTGGTCCCGGC
TGTCAACCAGATTGAGAACCACCCCTGCCTTCCCCAGCAGGAGGCGGTCG
ACTTCTGCAAGGAGAAGGGCATTCACATCACGGCATACAGCCCTCTCGGC
AGCACGGGCAGTCCGCTGCTGACAGCAGAGCCCATTGTCGAGGTTGCGAA
GAAGAAGGGTGTCGACCCAGCCACGGTCCTGCTGAGCTGGCACAGTACGT
ATCTTCCATGCCGAATAATGCGAGAATTATCACTAACTGCATCCTCCGTG
TAGTCAGCCGTGGCTCTTCCGTCCTTGCCAAGTCTGTGAACCCCTCTCGG
ATTGAGGGCAACCGCAACCTGGTGGCATTGGATGATGCTGATATGGCTAC
CATTGCCAAATACACGAATGACCTGGCCTCGAAGAACGCCTTTCAGCGTT
TTGTTTTCCCTCCTTTCAAGCTTGACTTCGGATTCCCGGACAAGATCGGC
CGCGTATAA back to topCoding sequence (CDS) from alignment at ch5:2159407..2160715- >KJC3_007327-T1 ID=KJC3_007327-T1|Name=KJC3_007327-T1|organism=Aspergillus niger KJC3|type=CDS|length=4560bp|location=Sequence derived from alignment at ch5:2159407..2160715- (Aspergillus niger KJC3)
TCAGCCGTGGCTCTTCCGTCCTTGCCAAGTCTGTGAACCCCTCTCGGATT
GAGGGCAACCGCAACCTGGTGGCATTGGATGATGCTGATATGGCTACCAT
TGCCAAATACACGAATGACCTGGCCTCGAAGAACGCCTTTCAGCGTTTTG
TTTTCCCTCCTTTCAAGCTTGACTTCGGATTCCCGGACAAGATCGGCCGC
GTATAAGAAACCACCCCAATATTCCCACCCTTCCCGACGGTTCCCGCGAC
CTGCACCTCAACCACTCCCATATCAACACTTGGAAGGATATGGAGAAGCT
TGTCGGTAGCGGAAAGACCAAGGCCATTGGTGTTTGCAACTACAGCAGGC
CCTACCTTGAGGAGCTCCTCGCCCAAGCCACCGTGGTCCCGGCTGTCAAC
CAGATTGAGAACCACCCCTGCCTTCCCCAGCAGGAGGCGGTCGACTTCTG
CAAGGAGAAGGGCATTCACATCACGGCATACAGCCCTCTCGGCAGCACGG
GCAGTCCGCTGCTGACAGCAGAGCCCATTGTCGAGGTTGCGAAGAAGAAG
GGTGTCGACCCAGCCACGGTCCTGCTGAGCTGGCACAGAACCTGGCAGTC
AGGCCCTGGAGAGGTCGAAAAGGCCGTGGCACATGCCATCTCCGTTGGAT
ACAGACACATTGATACCGCTTTTGCTTACGGAAACGAAGGAGAAGTCGGC
AAGGGTATCAAGGCAGCCATCGAGTCTGGAGTTGTCAAGCGAGAGGACCT
CTTTGTCACAACTAAGCTCTGGAGCACATGGCACTACCGAGTGGAACAGG
CTCTGGACCAGAGCTTGAAGAACTTGGGGCTGGACTATGTTGATCTCTAC
CTGGTCCACTGGCCGGTGGCTATGAACCCTAATGATGGCGGGGATGCGGA
GGGGCGGCGTGGGGGTCGCCCTTTTCTTCCCCTCCTCCCCTCCTTCCTCT
TTACCAGCTTTATCCTCGTTTCCTTGTAGTCTATCTGTCTTCTTCTTCTC
TTCTTTACCCTCACGTAGGCTCTACATATCTCATTCCCTCCAATTCTCTT
CGTATATTGCCAAAATGGGTTCGACTTCGACCGTCGCAGACACCCGCTTC
AAGCTGAACACCGGGGCTGAGATCCCTGCTCTCGGACTCGTCAGCCGTGG
CTCTTCCGTCCTTGCCAAGTCTGTGAACCCCTCTCGGATTGAGGGCAACC
GCAACCTGGTGGCATTGGATGATGCTGATATGGCTACCATTGCCAAATAC
ACGAATGACCTGGCCTCGAAGAACGCCTTTCAGCGTTTTGTTTTCCCTCC
TTTCAAGCTTGACTTCGGATTCCCGGACAAGATCGGCCGCGTATAAGAAA
CCACCCCAATATTCCCACCCTTCCCGACGGTTCCCGCGACCTGCACCTCA
ACCACTCCCATATCAACACTTGGAAGGATATGGAGAAGCTTGTCGGTAGC
GGAAAGACCAAGGCCATTGGTGTTTGCAACTACAGCAGGCCCTACCTTGA
GGAGCTCCTCGCCCAAGCCACCGTGGTCCCGGCTGTCAACCAGATTGAGA
ACCACCCCTGCCTTCCCCAGCAGGAGGCGGTCGACTTCTGCAAGGAGAAG
GGCATTCACATCACGGCATACAGCCCTCTCGGCAGCACGGGCAGTCCGCT
GCTGACAGCAGAGCCCATTGTCGAGGTTGCGAAGAAGAAGGGTGTCGACC
CAGCCACGGTCCTGCTGAGCTGGCACAGAACCTGGCAGTCAGGCCCTGGA
GAGGTCGAAAAGGCCGTGGCACATGCCATCTCCGTTGGATACAGACACAT
TGATACCGCTTTTGCTTACGGAAACGAAGGAGAAGTCGGCAAGGGTATCA
AGGCAGCCATCGAGTCTGGAGTTGTCAAGCGAGAGGACCTCTTTGTCACA
ACTAAGCTCTGGAGCACATGGCACTACCGAGTGGAACAGGCTCTGGACCA
GAGCTTGAAGAACTTGGGGCTGGACTATGTTGATCTCTACCTGGTCCACT
GGCCGGTGGCTATGAACCCTAATGATGGCGGGGATGCGGAGGGGCGGCGT
GGGGGTCGCCCTTTTCTTCCCCTCCTCCCCTCCTTCCTCTTTACCAGCTT
TATCCTCGTTTCCTTGTAGTCTATCTGTCTTCTTCTTCTCTTCTTTACCC
TCACGTAGGCTCTACATATCTCATTCCCTCCAATTCTCTTCGTATATTGC
CAAAATGGGTTCGACTTCGACCGTCGCAGACACCCGCTTCAAGCTGAACA
CCGGGGCTGAGATCCCTGCTCTCGGACTCGTCAGCCGTGGCTCTTCCGTC
CTTGCCAAGTCTGTGAACCCCTCTCGGATTGAGGGCAACCGCAACCTGGT
GGCATTGGATGATGCTGATATGGCTACCATTGCCAAATACACGAATGACC
TGGCCTCGAAGAACGCCTTTCAGCGTTTTGTTTTCCCTCCTTTCAAGCTT
GACTTCGGATTCCCGGACAAGATCGGCCGCGTATAAGAAACCACCCCAAT
ATTCCCACCCTTCCCGACGGTTCCCGCGACCTGCACCTCAACCACTCCCA
TATCAACACTTGGAAGGATATGGAGAAGCTTGTCGGTAGCGGAAAGACCA
AGGCCATTGGTGTTTGCAACTACAGCAGGCCCTACCTTGAGGAGCTCCTC
GCCCAAGCCACCGTGGTCCCGGCTGTCAACCAGATTGAGAACCACCCCTG
CCTTCCCCAGCAGGAGGCGGTCGACTTCTGCAAGGAGAAGGGCATTCACA
TCACGGCATACAGCCCTCTCGGCAGCACGGGCAGTCCGCTGCTGACAGCA
GAGCCCATTGTCGAGGTTGCGAAGAAGAAGGGTGTCGACCCAGCCACGGT
CCTGCTGAGCTGGCACAGAACCTGGCAGTCAGGCCCTGGAGAGGTCGAAA
AGGCCGTGGCACATGCCATCTCCGTTGGATACAGACACATTGATACCGCT
TTTGCTTACGGAAACGAAGGAGAAGTCGGCAAGGGTATCAAGGCAGCCAT
CGAGTCTGGAGTTGTCAAGCGAGAGGACCTCTTTGTCACAACTAAGCTCT
GGAGCACATGGCACTACCGAGTGGAACAGGCTCTGGACCAGAGCTTGAAG
AACTTGGGGCTGGACTATGTTGATCTCTACCTGGTCCACTGGCCGGTGGC
TATGAACCCTAATGATGGCGGGGATGCGGAGGGGCGGCGTGGGGGTCGCC
CTTTTCTTCCCCTCCTCCCCTCCTTCCTCTTTACCAGCTTTATCCTCGTT
TCCTTGTAGTCTATCTGTCTTCTTCTTCTCTTCTTTACCCTCACGTAGGC
TCTACATATCTCATTCCCTCCAATTCTCTTCGTATATTGCCAAAATGGGT
TCGACTTCGACCGTCGCAGACACCCGCTTCAAGCTGAACACCGGGGCTGA
GATCCCTGCTCTCGGACTCGTCAGCCGTGGCTCTTCCGTCCTTGCCAAGT
CTGTGAACCCCTCTCGGATTGAGGGCAACCGCAACCTGGTGGCATTGGAT
GATGCTGATATGGCTACCATTGCCAAATACACGAATGACCTGGCCTCGAA
GAACGCCTTTCAGCGTTTTGTTTTCCCTCCTTTCAAGCTTGACTTCGGAT
TCCCGGACAAGATCGGCCGCGTATAAGAAACCACCCCAATATTCCCACCC
TTCCCGACGGTTCCCGCGACCTGCACCTCAACCACTCCCATATCAACACT
TGGAAGGATATGGAGAAGCTTGTCGGTAGCGGAAAGACCAAGGCCATTGG
TGTTTGCAACTACAGCAGGCCCTACCTTGAGGAGCTCCTCGCCCAAGCCA
CCGTGGTCCCGGCTGTCAACCAGATTGAGAACCACCCCTGCCTTCCCCAG
CAGGAGGCGGTCGACTTCTGCAAGGAGAAGGGCATTCACATCACGGCATA
CAGCCCTCTCGGCAGCACGGGCAGTCCGCTGCTGACAGCAGAGCCCATTG
TCGAGGTTGCGAAGAAGAAGGGTGTCGACCCAGCCACGGTCCTGCTGAGC
TGGCACAGAACCTGGCAGTCAGGCCCTGGAGAGGTCGAAAAGGCCGTGGC
ACATGCCATCTCCGTTGGATACAGACACATTGATACCGCTTTTGCTTACG
GAAACGAAGGAGAAGTCGGCAAGGGTATCAAGGCAGCCATCGAGTCTGGA
GTTGTCAAGCGAGAGGACCTCTTTGTCACAACTAAGCTCTGGAGCACATG
GCACTACCGAGTGGAACAGGCTCTGGACCAGAGCTTGAAGAACTTGGGGC
TGGACTATGTTGATCTCTACCTGGTCCACTGGCCGGTGGCTATGAACCCT
AATGATGGCGGGGATGCGGAGGGGCGGCGTGGGGGTCGCCCTTTTCTTCC
CCTCCTCCCCTCCTTCCTCTTTACCAGCTTTATCCTCGTTTCCTTGTAGT
CTATCTGTCTTCTTCTTCTCTTCTTTACCCTCACGTAGGCTCTACATATC
TCATTCCCTCCAATTCTCTTCGTATATTGCCAAAATGGGTTCGACTTCGA
CCGTCGCAGACACCCGCTTCAAGCTGAACACCGGGGCTGAGATCCCTGCT
CTCGGACTCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018170 |
| DBxref | InterPro:IPR023210 |
| DBxref | InterPro:IPR036812 |
| DBxref | InterPro:IPR020471 |
| DBxref | PFAM:PF00248 |
| Product | H/ACA snoRNP pseudouridylase subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2159407..2160715 - |
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