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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2568977..2571033+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007468-T1 ID=KJC3_007468-T1|Name=KJC3_007468-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2057bp|location=Sequence derived from alignment at ch5:2568977..2571033+ (Aspergillus niger KJC3)
CTTTTCTTCAACTCCACGTCGGTCCACGGCAGGTCTACGGTCGCATAACC
CCGGGAAATTGAGACGCGACCTCGATAAGTCGCACGTAAAGGACCGTTTT
GTCTAATTTTTAGGGCCCTTCCCTCAATTTCGCAATGGCCGACTACCTTC
TGTTCGAGGGCCCCATGGGCTACTCGCTTTTCAAGGTCGCCCACCAGGGT
GACAGCGTTGGAAACCGCTTGAAGGAGGTTCAAGAAGGTGTTAACGACTT
GGCCAGTTTTGGTAAAATGGTCGAACTGTCCAGTTTCCTGCCTTTCGAGT
ATGTGGTTCAATTTTTCCCATAGGATCACTTTCCCGCAGGAATCTGACAA
CTTCCAGGAACAACAAGCAGGCTCTCAGTGAAATCAACGATGTCTCCGAG
GGTGTCGCTTCGGACACTCTGATCTCTTTCCTCGAATTGAACTTGCCCAA
GCCTAACAAGAAGAAGAAGGTTGTTCTGGGTCTTGCCGACAAGGCCTTGG
CTGGAAGTATCAAGTCTGCCTTCTCTTTCGTTGACTGCGAGACTGGAGAC
ACCAGCGAAGTCGTCCAGGATATGCTTCGTGGAGTTAGACTGCACGCCAC
CAAGCTGCTGAAGCAGCTGCGTGAGGGTGATATGGACACCGCTCAGCTTG
GTCTTGGTCACGCTTACTCTCGCGCCAAGGTTAAGTTTTCCGTTCAGCGC
GATGACAACCACATCATCCAGGCCATTGCTATCCTCGACCAGCTCGACAA
GGCCATCAACACTTTCTCCATGAGAGTCAGGGAATGGTACTCCTGGCACT
TCCCCGAACTCTACAAGATTGTCTCCGACAACCAACGCTACGCGCAGATT
GCCTTGTTCGTCCAGGACAAGAAGAGCTTGAACGACGAGAAGTTGCACGA
CATTGCTGCCCTTGTGGAGGATGATGAGGGTGTCGCCCAGAGTATCATCG
ACGCTGCTAAGCACAGCATGGGTCAGGAGATCTCCGAGACCGACATGGAG
AACGTTATCTCTTTCGCCCAGCGCGTTGTCAGCCTGTCCAAGTACCGCAA
GTCTCTCCACCAGTACCTGATTTCCAAGATGAGCGTTGTCGCCCCCAACC
TTGCTGCCCTTATTGGTGAGATCGTTGGTGCTCGCTTGATCTCCCACGCT
GGTAGCTTGACCAACCTGTCCAAGTACCCCGCTTCGACGGTTCAGATTCT
CGGTGCTGAGAAGGCCCTCTTCAGAGCCTTGAAGACCAAGGGCAACACCC
CCAAGTACGGTCTTCTGTACCACTCCTCTTTCATTGGAAGAGCTGGTCCC
AAGAACAAGGGTCGCATCTCTCGCTTCCTTGCCAACAAGTGCTCCATCGC
CTCCAGAATTGACAACTTCTCCGAGGAGCCCTCCACCAAGTTCGGAGAGG
CCCTTAAGAAGCAGGTTGAGGAGCGTCTGGACTTCTACGCCACTGGTGCT
GCCCCTACCAAGAACGAAGTCGCCATGGTAAGTCAACATAGCTAGTGTGA
TCGCTAGGACACTAGTGAACCACAAACCCCTTTTCTCCGTAACAATCACT
GATGGTCCTTACAGAAAAACGCCATGGATGCTGTCCTTGCTGATATGGAC
ATTGACGGCGCTGAGAGCGATGCCGAGATGCAGGATGCTGATGAGAAGGC
CGAGAAGAAGGACAAGAAGGAGAAGAAGGAAAAGAAGGACAAGAAGGAAA
AGAAGGAGAAGAAGGAAAAGGGCGAGAAGGAGGAGAAGAAGAAGAAGCGC
AAGTCCGACGTTGGCGAGGGCGAGTCCGAGAAGAAGAAGCGGAAGCACGA
CAGCGATGCTGAGCCGTCCAAAAAGAAGAAGAAGGTTTAAAAGTACCGAA
TCTTGGGACAGGAGGGCGTCATTGTCGCGGCGTTGATGGGTTTTCTTTAT
TATTCTTGCCAACCATGTTCTGTTTTCTCCTTGACGACTTGATGGGCTGG
GTATTTTGTAAATTATTCGATTGAGGCCTGTGTCGTGCTAAAATTTGTGT
GTAGTTCTTGCTGCCAATTTGATATGGCTTTTTGGTTCTAGACTTATATG
ACATGGC back to topCoding sequence (CDS) from alignment at ch5:2568977..2571033+ >KJC3_007468-T1 ID=KJC3_007468-T1|Name=KJC3_007468-T1|organism=Aspergillus niger KJC3|type=CDS|length=4680bp|location=Sequence derived from alignment at ch5:2568977..2571033+ (Aspergillus niger KJC3)
ATGGCCGACTACCTTCTGTTCGAGGGCCCCATGGGCTACTCGCTTTTCAA
GGTCGCCCACCAGGGTGACAGCGTTGGAAACCGCTTGAAGGAGGTTCAAG
AAGGTGTTAACGACTTGGCCAGTTTTGGTAAAATGGTCGAACTGTCCAGT
TTCCTGCCTTTCGAGAACAACAAGCAGGCTCTCAGTGAAATCAACGATGT
CTCCGAGGGTGTCGCTTCGGACACTCTGATCTCTTTCCTCGAATTGAACT
TGCCCAAGCCTAACAAGAAGAAGAAGGTTGTTCTGGGTCTTGCCGACAAG
GCCTTGGCTGGAAGTATCAAGTCTGCCTTCTCTTTCGTTGACTGCGAGAC
TGGAGACACCAGCGAAGTCGTCCAGGATATGCTTCGTGGAGTTAGACTGC
ACGCCACCAAGCTGCTGAAGCAGCTGCGTGAGGGTGATATGGACACCGCT
CAGCTTGGTCTTGGTCACGCTTACTCTCGCGCCAAGGTTAAGTTTTCCGT
TCAGCGCGATGACAACCACATCATCCAGGCCATTGCTATCCTCGACCAGC
TCGACAAGGCCATCAACACTTTCTCCATGAGAGTCAGGGAATGGTACTCC
TGGCACTTCCCCGAACTCTACAAGATTGTCTCCGACAACCAACGCTACGC
GCAGATTGCCTTGTTCGTCCAGGACAAGAAGAGCTTGAACGACGAGAAGT
TGCACGACATTGCTGCCCTTGTGGAGGATGATGAGGGTGTCGCCCAGAGT
ATCATCGACGCTGCTAAGCACAGCATGGGTCAGGAGATCTCCGAGACCGA
CATGGAGAACGTTATCTCTTTCGCCCAGCGCGTTGTCAGCCTGTCCAAGT
ACCGCAAGTCTCTCCACCAGTACCTGATTTCCAAGATGAGCGTTGTCGCC
CCCAACCTTGCTGCCCTTATTGGTGAGATCGTTGGTGCTCGCTTGATCTC
CCACGCTGGTAGCTTGACCAACCTGTCCAAGTACCCCGCTTCGACGGTTC
AGATTCTCGGTGCTGAGAAGGCCCTCTTCAGAGCCTTGAAGACCAAGGGC
AACACCCCCAAGTACGGTCTTCTGTACCACTCCTCTTTCATTGGAAGAGC
TGGTCCCAAGAACAAGGGTCGCATCTCTCGCTTCCTTGCCAACAAGTGCT
CCATCGCCTCCAGAATTGACAACTTCTCCGAGGAGCCCTCCACCAAGTTC
GGAGAGGCCCTTAAGAAGCAGGTTGAGGAGCGTCTGGACTTCTACGCCAC
TGGTGCTGCCCCTACCAAGAACGAAGTCGCCATGAAAAACGCCATGGATG
CTGTCCTTGCTGATATGGACATTGACGGCGCTGAGAGCGATGCCGAGATG
CAGGATGCTGATGAGAAGGCCGAGAAGAAGGACAAGAAGGAGAAGAAGGA
AAAGAAGGACAAGAAGGAAAAGAAGGAGAAGAAGGAAAAGGGCGAGAAGG
AGGAGAAGAAGAAGAAGCGCAAGTCCGACGTTGGCGAGGGCGAGTCCGAG
AAGAAGAAGCGGAAGCACGACAGCGATGCTGAGCCGTCCAAAAAGAAGAA
GAAGGTTTAAATGGCCGACTACCTTCTGTTCGAGGGCCCCATGGGCTACT
CGCTTTTCAAGGTCGCCCACCAGGGTGACAGCGTTGGAAACCGCTTGAAG
GAGGTTCAAGAAGGTGTTAACGACTTGGCCAGTTTTGGTAAAATGGTCGA
ACTGTCCAGTTTCCTGCCTTTCGAGAACAACAAGCAGGCTCTCAGTGAAA
TCAACGATGTCTCCGAGGGTGTCGCTTCGGACACTCTGATCTCTTTCCTC
GAATTGAACTTGCCCAAGCCTAACAAGAAGAAGAAGGTTGTTCTGGGTCT
TGCCGACAAGGCCTTGGCTGGAAGTATCAAGTCTGCCTTCTCTTTCGTTG
ACTGCGAGACTGGAGACACCAGCGAAGTCGTCCAGGATATGCTTCGTGGA
GTTAGACTGCACGCCACCAAGCTGCTGAAGCAGCTGCGTGAGGGTGATAT
GGACACCGCTCAGCTTGGTCTTGGTCACGCTTACTCTCGCGCCAAGGTTA
AGTTTTCCGTTCAGCGCGATGACAACCACATCATCCAGGCCATTGCTATC
CTCGACCAGCTCGACAAGGCCATCAACACTTTCTCCATGAGAGTCAGGGA
ATGGTACTCCTGGCACTTCCCCGAACTCTACAAGATTGTCTCCGACAACC
AACGCTACGCGCAGATTGCCTTGTTCGTCCAGGACAAGAAGAGCTTGAAC
GACGAGAAGTTGCACGACATTGCTGCCCTTGTGGAGGATGATGAGGGTGT
CGCCCAGAGTATCATCGACGCTGCTAAGCACAGCATGGGTCAGGAGATCT
CCGAGACCGACATGGAGAACGTTATCTCTTTCGCCCAGCGCGTTGTCAGC
CTGTCCAAGTACCGCAAGTCTCTCCACCAGTACCTGATTTCCAAGATGAG
CGTTGTCGCCCCCAACCTTGCTGCCCTTATTGGTGAGATCGTTGGTGCTC
GCTTGATCTCCCACGCTGGTAGCTTGACCAACCTGTCCAAGTACCCCGCT
TCGACGGTTCAGATTCTCGGTGCTGAGAAGGCCCTCTTCAGAGCCTTGAA
GACCAAGGGCAACACCCCCAAGTACGGTCTTCTGTACCACTCCTCTTTCA
TTGGAAGAGCTGGTCCCAAGAACAAGGGTCGCATCTCTCGCTTCCTTGCC
AACAAGTGCTCCATCGCCTCCAGAATTGACAACTTCTCCGAGGAGCCCTC
CACCAAGTTCGGAGAGGCCCTTAAGAAGCAGGTTGAGGAGCGTCTGGACT
TCTACGCCACTGGTGCTGCCCCTACCAAGAACGAAGTCGCCATGAAAAAC
GCCATGGATGCTGTCCTTGCTGATATGGACATTGACGGCGCTGAGAGCGA
TGCCGAGATGCAGGATGCTGATGAGAAGGCCGAGAAGAAGGACAAGAAGG
AGAAGAAGGAAAAGAAGGACAAGAAGGAAAAGAAGGAGAAGAAGGAAAAG
GGCGAGAAGGAGGAGAAGAAGAAGAAGCGCAAGTCCGACGTTGGCGAGGG
CGAGTCCGAGAAGAAGAAGCGGAAGCACGACAGCGATGCTGAGCCGTCCA
AAAAGAAGAAGAAGGTTTAAATGGCCGACTACCTTCTGTTCGAGGGCCCC
ATGGGCTACTCGCTTTTCAAGGTCGCCCACCAGGGTGACAGCGTTGGAAA
CCGCTTGAAGGAGGTTCAAGAAGGTGTTAACGACTTGGCCAGTTTTGGTA
AAATGGTCGAACTGTCCAGTTTCCTGCCTTTCGAGAACAACAAGCAGGCT
CTCAGTGAAATCAACGATGTCTCCGAGGGTGTCGCTTCGGACACTCTGAT
CTCTTTCCTCGAATTGAACTTGCCCAAGCCTAACAAGAAGAAGAAGGTTG
TTCTGGGTCTTGCCGACAAGGCCTTGGCTGGAAGTATCAAGTCTGCCTTC
TCTTTCGTTGACTGCGAGACTGGAGACACCAGCGAAGTCGTCCAGGATAT
GCTTCGTGGAGTTAGACTGCACGCCACCAAGCTGCTGAAGCAGCTGCGTG
AGGGTGATATGGACACCGCTCAGCTTGGTCTTGGTCACGCTTACTCTCGC
GCCAAGGTTAAGTTTTCCGTTCAGCGCGATGACAACCACATCATCCAGGC
CATTGCTATCCTCGACCAGCTCGACAAGGCCATCAACACTTTCTCCATGA
GAGTCAGGGAATGGTACTCCTGGCACTTCCCCGAACTCTACAAGATTGTC
TCCGACAACCAACGCTACGCGCAGATTGCCTTGTTCGTCCAGGACAAGAA
GAGCTTGAACGACGAGAAGTTGCACGACATTGCTGCCCTTGTGGAGGATG
ATGAGGGTGTCGCCCAGAGTATCATCGACGCTGCTAAGCACAGCATGGGT
CAGGAGATCTCCGAGACCGACATGGAGAACGTTATCTCTTTCGCCCAGCG
CGTTGTCAGCCTGTCCAAGTACCGCAAGTCTCTCCACCAGTACCTGATTT
CCAAGATGAGCGTTGTCGCCCCCAACCTTGCTGCCCTTATTGGTGAGATC
GTTGGTGCTCGCTTGATCTCCCACGCTGGTAGCTTGACCAACCTGTCCAA
GTACCCCGCTTCGACGGTTCAGATTCTCGGTGCTGAGAAGGCCCTCTTCA
GAGCCTTGAAGACCAAGGGCAACACCCCCAAGTACGGTCTTCTGTACCAC
TCCTCTTTCATTGGAAGAGCTGGTCCCAAGAACAAGGGTCGCATCTCTCG
CTTCCTTGCCAACAAGTGCTCCATCGCCTCCAGAATTGACAACTTCTCCG
AGGAGCCCTCCACCAAGTTCGGAGAGGCCCTTAAGAAGCAGGTTGAGGAG
CGTCTGGACTTCTACGCCACTGGTGCTGCCCCTACCAAGAACGAAGTCGC
CATGAAAAACGCCATGGATGCTGTCCTTGCTGATATGGACATTGACGGCG
CTGAGAGCGATGCCGAGATGCAGGATGCTGATGAGAAGGCCGAGAAGAAG
GACAAGAAGGAGAAGAAGGAAAAGAAGGACAAGAAGGAAAAGAAGGAGAA
GAAGGAAAAGGGCGAGAAGGAGGAGAAGAAGAAGAAGCGCAAGTCCGACG
TTGGCGAGGGCGAGTCCGAGAAGAAGAAGCGGAAGCACGACAGCGATGCT
GAGCCGTCCAAAAAGAAGAAGAAGGTTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007468-T1.utr5p1 | KJC3_007468-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007468-T1.utr3p1 | KJC3_007468-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036070 |
| DBxref | InterPro:IPR042239 |
| DBxref | InterPro:IPR012974 |
| DBxref | InterPro:IPR029012 |
| DBxref | InterPro:IPR002687 |
| DBxref | InterPro:IPR012976 |
| DBxref | PFAM:PF08156 |
| DBxref | PFAM:PF01798 |
| Product | snoRNP complex protein nop56 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2568977..2571033 + |
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