You are here

Home

KJC3_009043-T1, KJC3_009043-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009043-T1
Unique NameKJC3_009043-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4066521..4068481+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009043-T1 ID=KJC3_009043-T1|Name=KJC3_009043-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1961bp|location=Sequence derived from alignment at ch6:4066521..4068481+ (Aspergillus niger KJC3)
CATCAATTGTGCGTTGCGACATCAGAGATCCGCGAAGGATGTAGCAATGG
TAGACTTAAATCTTCGATTTTGCACTCGTGGTCATGTAACACGACCTCTT
ACTCTTGGTCTCATCGTATATTCGCACCTCAAGTGACCGATGACCACGCT
TGAACCCCTTGGCAGGCGGGAGCACATTCCTGCCGCAACCTGCAGTAAGG
AATGTCACGGCAGCTCATCCTTTGTGAATAATCGAAATTCGACCAAGGCG
ACCGTACTTTCCTGGGGTTTCACCGAATCGACACATTCATTTGCTGCCGA
TCATGTCGATGTAGGGCAACAGGGCCACCAGATACTAGTCGATTTAGTGC
CCTCATGCCGCAAGTCTTCCTTCAGAAACCTACATGGAAAACGGTTGCAA
GTGGCAGACCAAGAAGATATAGCGATTGCGAAGAAGACTGTGCATTTCGA
TGAAACCTTCGAGGAAAGCTGTTTCTTCCTGTCAGCAGATGCTCCTCGGG
CCCTAACCTCAGAACCTGCATCGACAAGAAATGAAAAGGACGCTATAGTC
CCCACCCTCAAGTGTGATTCTGTGATAAGCCGACAGAAAAGATTCTGCCT
GTTGAACTCCCCGTTCGATTCACCTTCAACGTTGCAGCCCGTCCTGCTAG
AGAGCGTGGAATTTTCGCCAACGGGTAAGCAGATCAAAGGGACTGTGAAA
GTGCTGAACCTTGGGTTTCAGAAAGATGTAGCTGCTCGTTTCACCTTTGA
TGACTGGAAAACGGTCTCGGAAGTCTCAGCTGAGCATGAGCAGTCCCTGT
ACCTAGGGCATTCAATTGTCTCCGACCGTTTTGTTTTCTTGATCGATTCG
AAAAATATCCCCTTGCAATTGGGAAACATGATTCATGTCTGCATCCGTTA
CAATGTGCTCGACCGGGAATACTGGGACAACAACGGGGGAACGGATTATA
GTGTTACCCTACCCATTTGATTCGTGATGCAAATGTTCGGATTTTATCGA
TTTGATCAAATTATGGTGAACGTCCCCACAGTACCTGGGGCGCCGATAGT
GCAGTGGAGTGCGCGACATCAGGTAGCAGTGAAATTTCGGGACAAAGGTT
TTGCTGTTAGGGACGCTGATATGGGTCTCTACTGACGCGGTGTATGTTTC
GGTGGATGGATGGATGGATGATTTCATTTACCCTGACCCCTCGCAAAAAG
CGATATCCAAGAGATTGGCTTATCGTCAGACCGTGATAGTGATGAAACTA
GGGCTATACCGTTGCATTGGCTGCCTCGACGAGGCAGACATTGTATACCT
ATATTTATCCGGAACCCCCCGCTTGAGAGCCGTTCAGGATTTCATGGCCT
GCTTATCTTGACTCTGGAGTTCCTGCACCAGATTCGAGCAACGCTTGCGA
CTGCGCACGCGATGCACATCAAAAGCATGGCGCTGGAACGCCATTTGATG
TAGCAAGGCTACTTCACACCAGTTGCACTTGAGTGGCTTTTCTTTGAGAT
GAATAGCGTCAAAATGACGCGTAATACACCCGGCGTCATGATACATCTGG
AAGCGAACATGATCCGGGAGCCCCTTGTTTGCAAAGCATTGAAAGCAAGC
CTCTGGCTTCTCAGAATTCTCGAGGTATTCTTTAGTGGCACACAACGGCT
TGCCGGCGACAGAAACAGGTACCTCACATGAGTTGGCAACATTTTGGCTC
CGCCCTGCATCTTGCGGCTGGTTTATAGGGGCAGCCGACGTAACGGATTC
AGAGGCGTTCCGCTTGGGCCGGCCCCTTAACGGACCTCCTTCAAGGACGT
CACGATACTAGCTTGTGCATCGGTTGATGCTCAATAGTTGACCACAGTCT
TTTTTTCTGCCCTCGGTCGCGCTCGTTTCGAGCCAAGTTACATAAACCAT
TGTTTTAACTGTGGCTTCAACGCAAAGGTCAACAGAAGGGAACGGTCGGC
CGTGAAACCAC
back to top

Coding sequence (CDS) from alignment at ch6:4066521..4068481+

>KJC3_009043-T1 ID=KJC3_009043-T1|Name=KJC3_009043-T1|organism=Aspergillus niger KJC3|type=CDS|length=831bp|location=Sequence derived from alignment at ch6:4066521..4068481+ (Aspergillus niger KJC3)
ATGACCACGCTTGAACCCCTTGGCAGGCGGGAGCACATTCCTGCCGCAAC
CTGCAGTAAGGAATGTCACGGCAGCTCATCCTTTGTGAATAATCGAAATT
CGACCAAGGCGACCGTACTTTCCTGGGGTTTCACCGAATCGACACATTCA
TTTGCTGCCGATCATGTCGATGTAGGGCAACAGGGCCACCAGATACTAGT
CGATTTAGTGCCCTCATGCCGCAAGTCTTCCTTCAGAAACCTACATGGAA
AACGGTTGCAAGTGGCAGACCAAGAAGATATAGCGATTGCGAAGAAGACT
GTGCATTTCGATGAAACCTTCGAGGAAAGCTGTTTCTTCCTGTCAGCAGA
TGCTCCTCGGGCCCTAACCTCAGAACCTGCATCGACAAGAAATGAAAAGG
ACGCTATAGTCCCCACCCTCAAGTGTGATTCTGTGATAAGCCGACAGAAA
AGATTCTGCCTGTTGAACTCCCCGTTCGATTCACCTTCAACGTTGCAGCC
CGTCCTGCTAGAGAGCGTGGAATTTTCGCCAACGGGTAAGCAGATCAAAG
GGACTGTGAAAGTGCTGAACCTTGGGTTTCAGAAAGATGTAGCTGCTCGT
TTCACCTTTGATGACTGGAAAACGGTCTCGGAAGTCTCAGCTGAGCATGA
GCAGTCCCTGTACCTAGGGCATTCAATTGTCTCCGACCGTTTTGTTTTCT
TGATCGATTCGAAAAATATCCCCTTGCAATTGGGAAACATGATTCATGTC
TGCATCCGTTACAATGTGCTCGACCGGGAATACTGGGACAACAACGGGGG
AACGGATTATAGTGTTACCCTACCCATTTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_009043KJC3_009043Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009043-T1.utr5p1KJC3_009043-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009043-T1.exon1KJC3_009043-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009043-T1.cdsKJC3_009043-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009043-T1.utr3p1KJC3_009043-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009043-T1KJC3_009043-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteCAZy:CBM21
DBxrefInterPro:IPR038175
DBxrefInterPro:IPR005036
DBxrefPFAM:PF03370
DBxrefPFAM:PF16760
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4066521..4068481 +
Powered by Drupal