You are here

Home

KJC3_009450-T1, KJC3_009450-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009450-T1
Unique NameKJC3_009450-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:420376..422048-

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009450-T1 ID=KJC3_009450-T1|Name=KJC3_009450-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1673bp|location=Sequence derived from alignment at ch7:420376..422048- (Aspergillus niger KJC3)
CAACATGCTTATCACTGACCGTTGAGTGTGTGTATGAGCCGTCTGACTGC
TCAACAAATGTTTTGGTCCGCAAAGAATATGTCGCAGACCTGGAACAGCG
ACTGAGATGCGTCGAGAGCCGACTGCAACGGCATGACGACTTGCTGACAG
GGCATCTCTCTGTATGCGCAACAGATAAAGTAAACAGATGTGATCCACCA
ATGGGTGATCACTCGAGCATCAGTACTGTCCGACAGATACAAGATGAGGT
TCACGTCGATGGAGTCAATGGGGAGGACCCCGGGTCGGACGACACAAAGA
CAGATGGCCTTGCCCTTGGCTTTGTCGACGAACCGACCACTGAGTTTTAC
GGCGAATCATCCAGCATTGCGTTCACGCGTTGTCTTTTAGAGGCTATGTC
TCTAGATTTGACCGCCAAGCGGACCAAGACGAAGTCACCATGCAATGAAA
ATGGGTTTGTTGAGTGCAACATCGCGCCGGTGTCTCAACAGCAGTCAGTC
ATGGAGTCTCCTAAAGATCAGCCTTCCTCGCCCACGACCCTTGTTTCCGA
AACAGAGATGGACTCCTTGCTGGACATTTATTTCAATGACTATGGCTCTC
TCTTTCCTTTTCTCCATGAGCCGACCTTCAGAGACACATACAATGAGTAC
AAGGCAAGCGGTTTTGTCAAAGCCCGGAGAGGCTGGCTCGGTGTGCTCAC
CATGACCTTTGCAATGGCTACCCACATTAATCAAAATGGAAAGGTCTCGG
CAAAGCATCGGTTCAGGCGGTCCCATGTTCTTTTTCAACGGGCGGTATCC
CTCTGCAGCGAATTGTCAGTGCGAACAGTCAGCCTTGACATTGTACAATA
TCTTCTGCTGGCCGTGCTCTATCTTCAAGGCACACAGATGCCTGTTCAGA
TGTGGACAATGCATGGGATGCTCGTACGAACAGCGACGGCGTTAGGTCTG
CACTCAGAGCAAGCAGCACAGGGGCTTCACCCCATACAGCAAGAAATCCG
CCGACGTACCTGGCTCACGATCTACTGTTTGGACAGAATCCTGAGCGTCA
CGTGGGGACGCCCGCCGGCAATTCCAGACGAGTATATCGTGGTGAAGTTG
CCATCGCCATGGGTGACCATGACCGAAACAACCACACATCATTCGAATGC
CGGCGACATTCACACGGCGTTCTTCGACGCGACCGTGCGGCTGCTCCAGG
TTGTGGGTCGGTCCCTAGCCACACAATACGGCCAGAATCTTGGGCCTGGG
GACCAAAAGATCGACGAGAGTACCGCTATTCACGCGGCAAGCACGATGCG
ACAGGACCTTCGGCGATGGACTTCCAGTTTACCATCATGTCTGGACCTGT
ATGAGACTGGATCGGATGTTCACCTGCAAAATGATAATACAATATCAAAC
CGGTTGCGGATAATTCTTACGCTTCGATATCATTTTGTCAACATTTTAAT
CCATCGACCACTTCTATGCACCATCCTGCGTTACTTGACCTTGTTAGGTT
CTCCCACAGGGAGACCATTACCTTATAGAATTCAGCTTGCAGTGGCGGAA
GCCCACGAGTGCATAGTCTCTGCTGAGAAGACAATCGAAGTAGTGCATGC
AGTTATCAACGCGCCGTACCCTTCTCACACCAGGTTAGATGTTTGGTTCT
TTACTTTATTTCATGGTAGGTGA
back to top

Coding sequence (CDS) from alignment at ch7:420376..422048-

>KJC3_009450-T1 ID=KJC3_009450-T1|Name=KJC3_009450-T1|organism=Aspergillus niger KJC3|type=CDS|length=1473bp|location=Sequence derived from alignment at ch7:420376..422048- (Aspergillus niger KJC3)
ATGGGTGATCACTCGAGCATCAGTACTGTCCGACAGATACAAGATGAGGT
TCACGTCGATGGAGTCAATGGGGAGGACCCCGGGTCGGACGACACAAAGA
CAGATGGCCTTGCCCTTGGCTTTGTCGACGAACCGACCACTGAGTTTTAC
GGCGAATCATCCAGCATTGCGTTCACGCGTTGTCTTTTAGAGGCTATGTC
TCTAGATTTGACCGCCAAGCGGACCAAGACGAAGTCACCATGCAATGAAA
ATGGGTTTGTTGAGTGCAACATCGCGCCGGTGTCTCAACAGCAGTCAGTC
ATGGAGTCTCCTAAAGATCAGCCTTCCTCGCCCACGACCCTTGTTTCCGA
AACAGAGATGGACTCCTTGCTGGACATTTATTTCAATGACTATGGCTCTC
TCTTTCCTTTTCTCCATGAGCCGACCTTCAGAGACACATACAATGAGTAC
AAGGCAAGCGGTTTTGTCAAAGCCCGGAGAGGCTGGCTCGGTGTGCTCAC
CATGACCTTTGCAATGGCTACCCACATTAATCAAAATGGAAAGGTCTCGG
CAAAGCATCGGTTCAGGCGGTCCCATGTTCTTTTTCAACGGGCGGTATCC
CTCTGCAGCGAATTGTCAGTGCGAACAGTCAGCCTTGACATTGTACAATA
TCTTCTGCTGGCCGTGCTCTATCTTCAAGGCACACAGATGCCTGTTCAGA
TGTGGACAATGCATGGGATGCTCGTACGAACAGCGACGGCGTTAGGTCTG
CACTCAGAGCAAGCAGCACAGGGGCTTCACCCCATACAGCAAGAAATCCG
CCGACGTACCTGGCTCACGATCTACTGTTTGGACAGAATCCTGAGCGTCA
CGTGGGGACGCCCGCCGGCAATTCCAGACGAGTATATCGTGGTGAAGTTG
CCATCGCCATGGGTGACCATGACCGAAACAACCACACATCATTCGAATGC
CGGCGACATTCACACGGCGTTCTTCGACGCGACCGTGCGGCTGCTCCAGG
TTGTGGGTCGGTCCCTAGCCACACAATACGGCCAGAATCTTGGGCCTGGG
GACCAAAAGATCGACGAGAGTACCGCTATTCACGCGGCAAGCACGATGCG
ACAGGACCTTCGGCGATGGACTTCCAGTTTACCATCATGTCTGGACCTGT
ATGAGACTGGATCGGATGTTCACCTGCAAAATGATAATACAATATCAAAC
CGGTTGCGGATAATTCTTACGCTTCGATATCATTTTGTCAACATTTTAAT
CCATCGACCACTTCTATGCACCATCCTGCGTTACTTGACCTTGTTAGGTT
CTCCCACAGGGAGACCATTACCTTATAGAATTCAGCTTGCAGTGGCGGAA
GCCCACGAGTGCATAGTCTCTGCTGAGAAGACAATCGAAGTAGTGCATGC
AGTTATCAACGCGCCGTACCCTTCTCACACCAGGTTAGATGTTTGGTTCT
TTACTTTATTTCATGGTAGGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_009450KJC3_009450Aspergillus niger KJC3gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009450-T1.cdsKJC3_009450-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009450-T1.exon1KJC3_009450-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009450-T1.utr5p1KJC3_009450-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009450-T1KJC3_009450-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR007219
DBxrefPFAM:PF04082
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:420376..422048 -
Powered by Drupal