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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:920367..921421- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009618-T1 ID=KJC3_009618-T1|Name=KJC3_009618-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1055bp|location=Sequence derived from alignment at ch7:920367..921421- (Aspergillus niger KJC3)
GCCACACCAACTATCTTCTACCAATTTCAATCCATTGACTACTATTCTCA
AAATGAATTTCTACCCACCACCGTCAACAATCCAAGCCGAAATCTACGCC
CGCATCCCCTCTCACCTCCGGTGCACAGGCCAACCGACAGAGTGGCGCAG
CGGCTCGGCACGCCCAGCATCTGATATCTTCCTCGAGGGGCCAGTCTATA
CGCAGAATGGCGATCTCTACATTGTAGATGTTCCCTACGGGAGGATTCTC
AAGATAGACAAGAACAAGGAAGTAACCGAATGTATTCGCTACGACGGGGA
ACCGAACGGTTTAGTCGTCCGAGAAGACGGATGTCTAGTGATTGCGGATT
ATAAGCAGGTGCATACATACCTCCCCACTCCATTTCCCACAAGCCCAATT
GGATTAAAGACTAATGAGGTAAAAGGGCATCCTCCTATTCTCCCCCACCA
CCAACACCCTAACCCCCCTCCTAACCCGGCGCAACCTGGAGCGCTTCAAA
GGCCCAAACGACCTAATTATCTCCAGCAAGAACGAGATCTACTTCACAGA
CCAGGGCCAAACGGGAATGACGGACCCGTCCGGGTGTGTATACCGGCTCT
CTCCCGACGGAAGGCTAGACTGTCTCGTATCGAACGGGATATCTCCGAAC
GGGTTGGTGTTATCCCCCGATGAGCGGTTCTTGTATGTTGCCATGACGAG
GCAAAATTCTGTGTGGAGGTTGCCGCTGCATGCGGATGGGAGCACGTCGA
AAGTGGGATTGTTCTTCCAGTCGTTTGGGTGTGCAGGGCCTGATGGGCTG
GCGGTGGACGAAGAGGGGAGTTTGTTTATCTGTCATCCTAGTCTTGGATG
TGTGTTTGTGGTGGATAGGGAGGGGGTGCCGAAGGCGAGGATTGTCACTG
CGAAGGATGGGGGGAAGAATTTGACGAACTGTACGTTTGGCGGAGAGGAT
GGGAGGACGTTGTTCATTACGGATAGTATTGAGGGGAATGTGCAGGTTGT
GAGGTGGCATTGTAGGGGGGTGGTTGGGGGGAGGGTTTTGAAGGCTAAAA
TCTAG back to topCoding sequence (CDS) from alignment at ch7:920367..921421- >KJC3_009618-T1 ID=KJC3_009618-T1|Name=KJC3_009618-T1|organism=Aspergillus niger KJC3|type=CDS|length=1872bp|location=Sequence derived from alignment at ch7:920367..921421- (Aspergillus niger KJC3)
GGCATCCTCCTATTCTCCCCCACCACCAACACCCTAACCCCCCTCCTAAC
CCGGCGCAACCTGGAGCGCTTCAAAGGCCCAAACGACCTAATTATCTCCA
GCAAGAACGAGATCTACTTCACAGACCAGGGCCAAACGGGAATGACGGAC
CCGTCCGGGTGTGTATACCGGCTCTCTCCCGACGGAAGGCTAGACTGTCT
CGTATCGAACGGGATATCTCCGAACGGGTTGGTGTTATCCCCCGATGAGC
GGTTCTTGTATGTTGCCATGACGAGGCAAAATTCTGTGTGGAGGTTGCCG
CTGCATGCGGATGGGAGCACGTCGAAAGTGGGATTGTTCTTCCAGTCGTT
TGGGTGTGCAGGGCCTGATGGGCTGGCGGTGGACGAAGAGGGGAGTTTGT
TTATCTGTCATCCTAGTCTTGGATGTGTGTTTGTGGTGGATAGGGAGGGG
GTGCCGAAGGCGAGGATTGTCACTGCGAAGGATGGGGGGAAGAATTTGAC
GAACTGTACGTTTGGCGGAGAGGATGGGAGGACGTTGTTCATTACGGATA
GTATTGAGGGGAATGTGCAGGTTGTGAGGTGGCATTGTAGGGGGGTGGTT
GGGGGGAGGGTTTTGAAGGCTAAAATCTAGATGAATTTCTACCCACCACC
GTCAACAATCCAAGCCGAAATCTACGCCCGCATCCCCTCTCACCTCCGGT
GCACAGGCCAACCGACAGAGTGGCGCAGCGGCTCGGCACGCCCAGCATCT
GATATCTTCCTCGAGGGGCCAGTCTATACGCAGAATGGCGATCTCTACAT
TGTAGATGTTCCCTACGGGAGGATTCTCAAGATAGACAAGAACAAGGAAG
TAACCGAATGTATTCGCTACGACGGGGAACCGAACGGTTTAGTCGTCCGA
GAAGACGGATGTCTAGTGATTGCGGATTATAAGCAGGGCATCCTCCTATT
CTCCCCCACCACCAACACCCTAACCCCCCTCCTAACCCGGCGCAACCTGG
AGCGCTTCAAAGGCCCAAACGACCTAATTATCTCCAGCAAGAACGAGATC
TACTTCACAGACCAGGGCCAAACGGGAATGACGGACCCGTCCGGGTGTGT
ATACCGGCTCTCTCCCGACGGAAGGCTAGACTGTCTCGTATCGAACGGGA
TATCTCCGAACGGGTTGGTGTTATCCCCCGATGAGCGGTTCTTGTATGTT
GCCATGACGAGGCAAAATTCTGTGTGGAGGTTGCCGCTGCATGCGGATGG
GAGCACGTCGAAAGTGGGATTGTTCTTCCAGTCGTTTGGGTGTGCAGGGC
CTGATGGGCTGGCGGTGGACGAAGAGGGGAGTTTGTTTATCTGTCATCCT
AGTCTTGGATGTGTGTTTGTGGTGGATAGGGAGGGGGTGCCGAAGGCGAG
GATTGTCACTGCGAAGGATGGGGGGAAGAATTTGACGAACTGTACGTTTG
GCGGAGAGGATGGGAGGACGTTGTTCATTACGGATAGTATTGAGGGGAAT
GTGCAGGTTGTGAGGTGGCATTGTAGGGGGGTGGTTGGGGGGAGGGTTTT
GAAGGCTAAAATCTAGATGAATTTCTACCCACCACCGTCAACAATCCAAG
CCGAAATCTACGCCCGCATCCCCTCTCACCTCCGGTGCACAGGCCAACCG
ACAGAGTGGCGCAGCGGCTCGGCACGCCCAGCATCTGATATCTTCCTCGA
GGGGCCAGTCTATACGCAGAATGGCGATCTCTACATTGTAGATGTTCCCT
ACGGGAGGATTCTCAAGATAGACAAGAACAAGGAAGTAACCGAATGTATT
CGCTACGACGGGGAACCGAACGGTTTAGTCGTCCGAGAAGACGGATGTCT
AGTGATTGCGGATTATAAGCAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009618-T1.utr5p1 | KJC3_009618-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR013658 |
| DBxref | InterPro:IPR011042 |
| DBxref | InterPro:IPR005511 |
| DBxref | PFAM:PF08450 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:920367..921421 - |
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