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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:923767..924796+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009620-T1 ID=KJC3_009620-T1|Name=KJC3_009620-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1030bp|location=Sequence derived from alignment at ch7:923767..924796+ (Aspergillus niger KJC3)
CTCTACCTTCTACCCTCCCACCCAACAAACCACTCCACACCACCCATTGA
CCCCATCCCATGGCCGGAACAAAACGCACCTGGGACGGACAACCATCATC
CACCACCACAACAACAACCCAACCACCCACCATGGCAGACTCTACCACAG
ACCAACCCCAACAACCCGAACAGCAACAGCAGCAGCAGCAATCCAACCCT
TTCATCAACATCTTCACCACCTTCCGCGACGAACTCGACGAGCACCACGA
CCGTCGCGAACGCATAATAAAAGCCAGTCGCGACATCACCGCCCTCAGCA
AGAAGATCATCTTTGCGTTGCAGCGGTAATCCCCTCCCCTACCCTTACCC
ACCATCTTATCCCCAAAACTAACACAGATGATAATAATAGAGTCCGAACC
CTGAACACATCCCTCCCCGCCTCTCTCACCAAAGAAACTACCACCCGCTT
CAACCAAATAACCACACACTTCACCTCCCTCCTCCCTGACCTTCGCCCAG
CACCAAACACCCACCGCTACATGCGGCAACTCAGCCCCGCGATCCAGGAA
TTCATCGAAGCGTTATCCTTTCACCACTACCTTACCACTCAGACTCTGAT
CACACTCGATGAAGTGAGGAAGCATCTTCCCGAAGGAATTCTGGTTACGG
AGGAGGATTATCTACTCGGGTTGTTCGATTTGACTGGGGAGATGATGCGG
TTTGCGGTTACCGGGTTGTCTGCTGGCACTTCTACATCTGATGATGGGGG
TGAAGGTGGTGGTGGTGGAGGATTGGGCCAGGAGCAGAAAGGCATCGTGG
TGGATTTGAGGGAAATGAGATGCGGGTTTGAGGGGTTGAGTGTACCGGGG
AGACATCGGGGCGTTATGTTGAGGGATATGGGGAAGAAGGTGGACGTCAT
GCAGGGGAGTGTGGAGAAGGTGGAACGTGCGGCGTATGGGATTTTGGTCA
GGGGGAGGGAGAGACCGAAGGGGTGGAGGCCGGATTTGGTGGTTGGTGGG
GGTGGGATGGGTGGTGAGGATGAGTATTGA back to topCoding sequence (CDS) from alignment at ch7:923767..924796+ >KJC3_009620-T1 ID=KJC3_009620-T1|Name=KJC3_009620-T1|organism=Aspergillus niger KJC3|type=CDS|length=1812bp|location=Sequence derived from alignment at ch7:923767..924796+ (Aspergillus niger KJC3)
ATGGCCGGAACAAAACGCACCTGGGACGGACAACCATCATCCACCACCAC
AACAACAACCCAACCACCCACCATGGCAGACTCTACCACAGACCAACCCC
AACAACCCGAACAGCAACAGCAGCAGCAGCAATCCAACCCTTTCATCAAC
ATCTTCACCACCTTCCGCGACGAACTCGACGAGCACCACGACCGTCGCGA
ACGCATAATAAAAGCCAGTCGCGACATCACCGCCCTCAGCAAGAAGATCA
TCTTTGCGTTGCAGCGAGTCCGAACCCTGAACACATCCCTCCCCGCCTCT
CTCACCAAAGAAACTACCACCCGCTTCAACCAAATAACCACACACTTCAC
CTCCCTCCTCCCTGACCTTCGCCCAGCACCAAACACCCACCGCTACATGC
GGCAACTCAGCCCCGCGATCCAGGAATTCATCGAAGCGTTATCCTTTCAC
CACTACCTTACCACTCAGACTCTGATCACACTCGATGAAGTGAGGAAGCA
TCTTCCCGAAGGAATTCTGGTTACGGAGGAGGATTATCTACTCGGGTTGT
TCGATTTGACTGGGGAGATGATGCGGTTTGCGGTTACCGGGTTGTCTGCT
GGCACTTCTACATCTGATGATGGGGGTGAAGGTGGTGGTGGTGGAGGATT
GGGCCAGGAGCAGAAAGGCATCGTGGTGGATTTGAGGGAAATGAGATGCG
GGTTTGAGGGGTTGAGTGTACCGGGGAGACATCGGGGCGTTATGTTGAGG
GATATGGGGAAGAAGGTGGACGTCATGCAGGGGAGTGTGGAGAAGGTGGA
ACGTGCGGCGTATGGGATTTTGGTCAGGGGGAGGGAGAGACCGAAGGGGT
GGAGGCCGGATTTGGTGGTTGGTGGGGGTGGGATGGGTGGTGAGGATGAG
TATTGAATGGCCGGAACAAAACGCACCTGGGACGGACAACCATCATCCAC
CACCACAACAACAACCCAACCACCCACCATGGCAGACTCTACCACAGACC
AACCCCAACAACCCGAACAGCAACAGCAGCAGCAGCAATCCAACCCTTTC
ATCAACATCTTCACCACCTTCCGCGACGAACTCGACGAGCACCACGACCG
TCGCGAACGCATAATAAAAGCCAGTCGCGACATCACCGCCCTCAGCAAGA
AGATCATCTTTGCGTTGCAGCGAGTCCGAACCCTGAACACATCCCTCCCC
GCCTCTCTCACCAAAGAAACTACCACCCGCTTCAACCAAATAACCACACA
CTTCACCTCCCTCCTCCCTGACCTTCGCCCAGCACCAAACACCCACCGCT
ACATGCGGCAACTCAGCCCCGCGATCCAGGAATTCATCGAAGCGTTATCC
TTTCACCACTACCTTACCACTCAGACTCTGATCACACTCGATGAAGTGAG
GAAGCATCTTCCCGAAGGAATTCTGGTTACGGAGGAGGATTATCTACTCG
GGTTGTTCGATTTGACTGGGGAGATGATGCGGTTTGCGGTTACCGGGTTG
TCTGCTGGCACTTCTACATCTGATGATGGGGGTGAAGGTGGTGGTGGTGG
AGGATTGGGCCAGGAGCAGAAAGGCATCGTGGTGGATTTGAGGGAAATGA
GATGCGGGTTTGAGGGGTTGAGTGTACCGGGGAGACATCGGGGCGTTATG
TTGAGGGATATGGGGAAGAAGGTGGACGTCATGCAGGGGAGTGTGGAGAA
GGTGGAACGTGCGGCGTATGGGATTTTGGTCAGGGGGAGGGAGAGACCGA
AGGGGTGGAGGCCGGATTTGGTGGTTGGTGGGGGTGGGATGGGTGGTGAG
GATGAGTATTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009620-T1.utr5p1 | KJC3_009620-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036081 |
| DBxref | InterPro:IPR016069 |
| DBxref | InterPro:IPR016068 |
| DBxref | InterPro:IPR002848 |
| DBxref | PFAM:PF01997 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:923767..924796 + |
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