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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:942306..944265+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009628-T1 ID=KJC3_009628-T1|Name=KJC3_009628-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1960bp|location=Sequence derived from alignment at ch7:942306..944265+ (Aspergillus niger KJC3)
CGCCATTCGAGGTGGTCAAATAATCTTCCCAGCCTACACACTTATCAGCC
TTGTATCAACGACCTCCTCCTACATCAGAAATGAAACTCGACCACCTCCC
CGTGGAGCTAATTCTCCAAATTGTTCCCTTCCTAACGAAACATGATTATG
CGCAACTAGTGCTGGTTTGCAAGTCCTGGTACTCCCTATTCATGCCCCAT
CTATACCACCATGTTGTGCTTCCCTTGAACCATTACTGTGGTTTCGGATA
TGGTCACAAGCGTAGTAGCAAGGATCTTCCTGTGCGTCGGTTCACCTTGG
CTCTGCTTGAGAATCCAACCCTTGCTCCCTTGATCCACTTTCTGCAGCTT
TATCCTAGTCATTGTGAGGGGAAATGGCAGAATCGGCCTCTGCTAAAGCC
GGTAGCTGAAGAAAAATACCTCCCTTTCATGCTGCCCTATGGCGATGTTA
AGCGCAAACATCGTCGCAAGTTTCATGCATGGCGCCGAGACCTCAAACAC
AGTTCTGAGCGACAGGACTGGTATCGGAAATACCGATATGAAGATGCTTG
GCTAGCCTTGCTCATGATGCAAGTCGAGAACCTCGAGACGTTCGCCATCG
AATTACCTGAAGAGTGGGATCACGTTGTTGACGAAGGAGAACCTCTACTC
AAAAATTCCGTACATTTTGAACGCGTCATTAAATGGGCAAGTAACCCGAA
GCTGGGCATTCTCACGCACCTAAAGCACGTCTCTTTGAGGAATGGCCCAG
CTTTCTGGGAGCATGGGACAGCTGTGAGCGCGGTTCCCTTTAACCGGCTG
ATTCCTTATCTCCGGATTCCGTCACTGCGAAAGCTCTATGTGCATAACGT
GTGTGATCGATCCCGATTTCACATGCCTAGAAATTTGGTTCTTCCACTGA
CCCATCTGGATCTTATGGCAAATGATGGTGACCTGCCTAATCTCCCCTGT
CTGCTGGAAAGGTGTCCAAACCTGCAGTCATTCACCCTTGAAGTGGGTGA
TGGGATGGCGAATCATACTCACCATTACCTGAATCACTCGCGCCTATACC
AGCCCTTGCGACGATCTCAATCGTCGTTGCGTTACCTGAACCTAATTTTC
CTGAGCGACCGGACCTGGCAGGATGCCGAAATCCCAACCCCTATCTTCTT
CGGGAGCCTGACTGAGTTTCGTAATCTCCAGACCATCCATATGCGATGGA
GTAGCTTGTTGCCGTTTCTTGGGAGGGGGGCCTACGATCCCGAGAAATCT
CTTCGAGAGCTGCTTCCTCGCTCTCTGCAATATCTCTTTATTCAAGATTG
CTTGATCCAATCCTCGTTGGTCCTGTGCAGGGAACTCGAAACCCTGGAGA
TACACTATTCTGAGGCCGTCCCTTTGCTCAAAGCGCTATATCTTGAGTAT
GCTGTTAGAGAGCAAGCACCAGGACAGGGGTGTATGAAGTGTGTTAGAGG
TCATTGGTCCAACTATCAAATGATGGAAACAGACCCCGTCATCGATCGCC
GTCTACTGGACTTGCAAGGGAAATTCCGTACGTTGGGCGTGGACTTCCGG
ATTATCGAACCAGGAGCCACGGCGAAACCTTTCCCTCTAGACGGTGCGTT
CAGGACGAAGTGGCCTTGGGAGACTTTTGATGGAGTTTTGATGTAGAAGT
TTCGTTCTTTTCCCTTCCGGAGATGTGGTATTTAGATGAAGCAAGGTATG
GGTAAGCTGCGTCAGACATAACGATTAGTTTGTGAAGAAGAACATGCGTG
ATGCAATACCGGGGCACGAGTATCAGCAGTATGGGAATAAATATCGTTGC
TTCTCCATGTGGTCATAACAATTCATGTTCAAATTGAAAGATGTGTATGG
GTGTTGATGAACCAAACAATCGAAAGGGCATATCAAATGGGTAGCAGTAA
TCTGAAAGCTTTCAGGAAGCCATGCTAATTGTAAGGGGAATTTGTCGGAG
GAAAAGGTGA back to topCoding sequence (CDS) from alignment at ch7:942306..944265+ >KJC3_009628-T1 ID=KJC3_009628-T1|Name=KJC3_009628-T1|organism=Aspergillus niger KJC3|type=CDS|length=1566bp|location=Sequence derived from alignment at ch7:942306..944265+ (Aspergillus niger KJC3)
ATGAAACTCGACCACCTCCCCGTGGAGCTAATTCTCCAAATTGTTCCCTT
CCTAACGAAACATGATTATGCGCAACTAGTGCTGGTTTGCAAGTCCTGGT
ACTCCCTATTCATGCCCCATCTATACCACCATGTTGTGCTTCCCTTGAAC
CATTACTGTGGTTTCGGATATGGTCACAAGCGTAGTAGCAAGGATCTTCC
TGTGCGTCGGTTCACCTTGGCTCTGCTTGAGAATCCAACCCTTGCTCCCT
TGATCCACTTTCTGCAGCTTTATCCTAGTCATTGTGAGGGGAAATGGCAG
AATCGGCCTCTGCTAAAGCCGGTAGCTGAAGAAAAATACCTCCCTTTCAT
GCTGCCCTATGGCGATGTTAAGCGCAAACATCGTCGCAAGTTTCATGCAT
GGCGCCGAGACCTCAAACACAGTTCTGAGCGACAGGACTGGTATCGGAAA
TACCGATATGAAGATGCTTGGCTAGCCTTGCTCATGATGCAAGTCGAGAA
CCTCGAGACGTTCGCCATCGAATTACCTGAAGAGTGGGATCACGTTGTTG
ACGAAGGAGAACCTCTACTCAAAAATTCCGTACATTTTGAACGCGTCATT
AAATGGGCAAGTAACCCGAAGCTGGGCATTCTCACGCACCTAAAGCACGT
CTCTTTGAGGAATGGCCCAGCTTTCTGGGAGCATGGGACAGCTGTGAGCG
CGGTTCCCTTTAACCGGCTGATTCCTTATCTCCGGATTCCGTCACTGCGA
AAGCTCTATGTGCATAACGTGTGTGATCGATCCCGATTTCACATGCCTAG
AAATTTGGTTCTTCCACTGACCCATCTGGATCTTATGGCAAATGATGGTG
ACCTGCCTAATCTCCCCTGTCTGCTGGAAAGGTGTCCAAACCTGCAGTCA
TTCACCCTTGAAGTGGGTGATGGGATGGCGAATCATACTCACCATTACCT
GAATCACTCGCGCCTATACCAGCCCTTGCGACGATCTCAATCGTCGTTGC
GTTACCTGAACCTAATTTTCCTGAGCGACCGGACCTGGCAGGATGCCGAA
ATCCCAACCCCTATCTTCTTCGGGAGCCTGACTGAGTTTCGTAATCTCCA
GACCATCCATATGCGATGGAGTAGCTTGTTGCCGTTTCTTGGGAGGGGGG
CCTACGATCCCGAGAAATCTCTTCGAGAGCTGCTTCCTCGCTCTCTGCAA
TATCTCTTTATTCAAGATTGCTTGATCCAATCCTCGTTGGTCCTGTGCAG
GGAACTCGAAACCCTGGAGATACACTATTCTGAGGCCGTCCCTTTGCTCA
AAGCGCTATATCTTGAGTATGCTGTTAGAGAGCAAGCACCAGGACAGGGG
TGTATGAAGTGTGTTAGAGGTCATTGGTCCAACTATCAAATGATGGAAAC
AGACCCCGTCATCGATCGCCGTCTACTGGACTTGCAAGGGAAATTCCGTA
CGTTGGGCGTGGACTTCCGGATTATCGAACCAGGAGCCACGGCGAAACCT
TTCCCTCTAGACGGTGCGTTCAGGACGAAGTGGCCTTGGGAGACTTTTGA
TGGAGTTTTGATGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009628-T1.utr5p1 | KJC3_009628-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009628-T1.utr3p1 | KJC3_009628-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036047 |
| DBxref | InterPro:IPR032675 |
| DBxref | InterPro:IPR001810 |
| DBxref | PFAM:PF12937 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:942306..944265 + |
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