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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1212811..1214388+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011645-T1 ID=KJC3_011645-T1|Name=KJC3_011645-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1578bp|location=Sequence derived from alignment at ch8:1212811..1214388+ (Aspergillus niger KJC3)
ATTCCATTTCTACACGATAAAAATGCCTGGAGTCAAGAAGCGCAAGGTCG
CCCGTGAGGCACCTGCGCCTGCGCCCGCACAAGAGAGCGATGTCGAATCT
TCCACCCCAGAGCAAACGCAAGAACCAGAAGCACAAGAGCAAGAACAAGA
AGAGGGACAGTCCAAGACATTCAAGGAACTAGGAATCATCGAACAGCTAT
GCGAGGCTTGCGAGACCATGGGCTACAAAGCACCTACACCTATTCAGCGG
GAGTCGATTCCTCTGGCTCTTCAAGGCCGTGATTTGATCGGTCTTGCAGA
GACCGGAAGTGGAAAGACGGCAGCGTTTGCTCTTCCCATCCTCCAAGGTA
CGTTTCCAGCTACAACAATCTTGTATCACCTTTTATCGGCGCTCCCAAAT
ATGACTAGATCAAATAACTAACATCACCCCACAGCCTTGATGGAAAAGCC
CCAACCCTTCTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACC
AGATCTCCAAATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGC
TGCGTCATCGTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGG
CAAAAAGCCCCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACC
TCGAGAACACCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATG
GACGAAGCGGATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAA
GATCCTGAAAGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGA
CGATGAGCTCAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCG
CTCCGTGTCTCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCT
CCAATCTTACCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCT
ACCTGTTGAACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACG
GTGAACGAGACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGG
CGCTATCCCGCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGC
TGGGCAAGTTCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTG
GCTGCTCGTGGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGA
TTTGCCGGGTGGTATGTATACCCGGTCTTCTGCTATGGGAGTATTATTGG
AGTCGGCTAATGTTTTTATGTATTAGATTCTCCCAGCTATGTCCACCGTG
TCGGACGTACTGCCCGTGCTGGAAAGAGTGGTCTTGCTATCAGCTTTGTC
GCCCAGTACGATGTTGAGGTTTGGCTGAGGATCGAAGGTGCTTTGGGCAA
GAAGCTCAAGGAATACGACTGCCCTAAGGATGAGGTCATGGTGCTTGGTG
AGAATGTCGCGGAGGCGCAACGGCAGGCGATTATGGATATGAAGGATTAC
AATGAGAAGAAGGGAAGCAGGGGCAAGAAGTTCGGTGGGAAGCGTTCCCG
GGATGAGATGGATCAAGAGGAGGGTTAG back to topCoding sequence (CDS) from alignment at ch8:1212811..1214388+ >KJC3_011645-T1 ID=KJC3_011645-T1|Name=KJC3_011645-T1|organism=Aspergillus niger KJC3|type=CDS|length=4212bp|location=Sequence derived from alignment at ch8:1212811..1214388+ (Aspergillus niger KJC3)
ATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGCCTGC
GCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCAAACGCAAG
AACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCAAGACATTC
AAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAGACCATGGG
CTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCTGGCTCTTC
AAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAAAGACGGCA
GCGTTTGCTCTTCCCATCCTCCAAGCCTTGATGGAAAAGCCCCAACCCTT
CTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACCAGATCTCCA
AATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGCTGCGTCATC
GTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGGCAAAAAGCC
CCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACCTCGAGAACA
CCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATGGACGAAGCG
GATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAAGATCCTGAA
AGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGACGATGAGCT
CAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCGCTCCGTGTC
TCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCTCCAATCTTA
CCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCTACCTGTTGA
ACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACGGTGAACGAG
ACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGGCGCTATCCC
GCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGCTGGGCAAGT
TCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTGGCTGCTCGT
GGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGATTTGCCGGG
TGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCTGGAA
AGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGTTTGG
CTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACTGCCC
TAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAACGGC
AGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAGGGGC
AAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAAGAGGAGGG
TTAGATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGC
CTGCGCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCAAACG
CAAGAACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCAAGAC
ATTCAAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAGACCA
TGGGCTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCTGGCT
CTTCAAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAAAGAC
GGCAGCGTTTGCTCTTCCCATCCTCCAAGCCTTGATGGAAAAGCCCCAAC
CCTTCTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACCAGATC
TCCAAATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGCTGCGT
CATCGTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGGCAAAA
AGCCCCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACCTCGAG
AACACCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATGGACGA
AGCGGATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAAGATCC
TGAAAGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGACGATG
AGCTCAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCGCTCCG
TGTCTCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCTCCAAT
CTTACCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCTACCTG
TTGAACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACGGTGAA
CGAGACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGGCGCTA
TCCCGCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGCTGGGC
AAGTTCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTGGCTGC
TCGTGGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGATTTGC
CGGGTGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCT
GGAAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGT
TTGGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACT
GCCCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAA
CGGCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAG
GGGCAAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAAGAGG
AGGGTTAGATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCT
GCGCCTGCGCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCA
AACGCAAGAACCAGAAGCACAAGAGCAAGAACAAGAAGAGGGACAGTCCA
AGACATTCAAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAG
ACCATGGGCTACAAAGCACCTACACCTATTCAGCGGGAGTCGATTCCTCT
GGCTCTTCAAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAA
AGACGGCAGCGTTTGCTCTTCCCATCCTCCAAGCCTTGATGGAAAAGCCC
CAACCCTTCTTCGGCCTCGTCCTCGCCCCAACCCGAGAACTCGCCTACCA
GATCTCCAAATCTTTCGAGTCCCTAGGCGCCAGCATGGGTGTGCGAAGCT
GCGTCATCGTCGGTGGCATGGACATGGTCTCTCAGTCAATTTCCCTCGGC
AAAAAGCCCCATATCATCGTGGCCACCCCTGGTCGTCTTCTGGACCACCT
CGAGAACACCAAGGGCTTCTCCCTCCGCAACCTGAAGTACCTGGTGATGG
ACGAAGCGGATCGACTTCTTGACATGGACTTCGGACCCCTCCTCGACAAG
ATCCTGAAAGTCCTGCCCCGTGAGCGCCGCACATTCCTCTTCTCTGCGAC
GATGAGCTCAAAGGTCGAATCCCTCCAACGTGCCTCCCTCTCCAATCCGC
TCCGTGTCTCTGTCTCCACAAGCAAATACCAGACCGTCTCGACTCTCCTC
CAATCTTACCTCTTCATTCCCCAGAAGCACAAGGACCTGTACCTTGTCTA
CCTGTTGAACGAATTCGCCGGCCAGAGTACTATCATCTTCACGAGGACGG
TGAACGAGACGCAGAGACTTGCGTTCTTGCTTCGTGCGCTTGGCTTCGGC
GCTATCCCGCTGCATGGACAGCTTTCACAGTCTGCTCGTCTCGGTGCGCT
GGGCAAGTTCCGTGCTCGTAGTCGGAATATTCTTGTCGCGACGGATGTGG
CTGCTCGTGGTTTGGATATTCCGTCCGTTGATGTTGTGCTTAACTTTGAT
TTGCCGGGTGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCG
TGCTGGAAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTG
AGGTTTGGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATAC
GACTGCCCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGC
GCAACGGCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAA
GCAGGGGCAAGAAGTTCGGTGGGAAGCGTTCCCGGGATGAGATGGATCAA
GAGGAGGGTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011645-T1.utr5p1 | KJC3_011645-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR001650 |
| DBxref | PFAM:PF04851 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF00270 |
| Product | ribosomal RNA processing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1212811..1214388 + |
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