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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:3816184..3818259+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012522-T1 ID=KJC3_012522-T1|Name=KJC3_012522-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2076bp|location=Sequence derived from alignment at ch8:3816184..3818259+ (Aspergillus niger KJC3)
CAACCACTCAAGCTCATTGTCGTCAATGGCGATTCCCTCTCGATGAAACC
TTTATTGTTAAGTACTAGCCATCTAGGCTTCCTCATAACGGCGATGTCCG
TGTAATTTACTGTCGCTGGCCCCACAAGGCAGGGTTCGCGCCGATCAACA
GCTTCGGGCAGTTCAGCGCCTCGCTCACACGCTGTGCCCAATGGCAGTGC
TGACGGCAGCCTAGAGGGTTTCTCCTCTTTGTCCGGTTTCTCCTATATGT
CTCGAGTCCAAGTGCACTTCATCTGCTTGCACTCTCTCCTGTTCCTACTC
TCTTCTATATGTACTTGTATTCTACATCTATTGAGCATATCAATCCTACA
TACTTCATATGAATACTCCGACATGACTTCATCCAGCCCCCGCAAGCAAA
AGAAATCCCAGCAGTCCAGCACCAAGGTGCTGCTGGCCGACACCATCGGA
CAATCGCTGTACGAGCGTCTCCTGCAAGCCCGACTCGACTGTCCCGTCAC
CCACTGGGCACCTGTGCACCATCCTCTCGCTCCTCAGCCCTCGTCTACCA
TCAACTGTAACCTCAGCATCAACAGCAGCAGCACCATCACCTCGTCCCCA
TCAACCTCCACCTCCGACTTCAAAAGCATCCCCTCCAGCCGCACCAGCCA
TGACTCTTTCCACAAACCCTCATCCTCACCCATCCACCCACCCCTCCCCT
CCAACCGCATCATATCCCTCGCCGGACCCATCACCACCTCCCTCCCCATC
CTCACCACCATCACCCACCTAGCCGCCAAGCACAGCCAAGTCTCACACAT
GTCCCTCCTCGACCCGAGCTACACCATCTTCCTAAACACCACGCACACCG
CGGCGCTCTGCTTCAAAGTCGTGCACCAAACGGCCATCATAGCCGGCGAC
CCCATCAGCTCCGAAGAGAACATCCCATCTCTCCTCTCCGAATTCAAAAC
CTACCGCAAAGCCCACCTCCTCGGCATGGCCTTCCTAGGCGCCAGCCCGC
GTCTTACACACTACGCCGAAACCCAGACTTTAACCGGCAGCAAATCCACC
AACAACTGGACAATGCTCCACTTCGGGACCTCACGCGTCCTCAACCCCAC
CACCAACGCCCTCCTCAACGAATCAACCGGAAAGCGTCTCCTCTTGCAGA
ATAAACAACTCCTAAATCCAAACAAAGGCGGCATAACCCTAGACATATAC
ATCCCTGGCAGCAATACCACATTGGAAAATGAATTACAGGATATCTACAC
AACCTGGCGCACCACCCGCAACACATCCACCACCCCCCAAGCCTTCATCA
CCGAATACACCTCCCCGTTCTCGTCGACCCTCCTTCCATCCCTGATGACA
TATATCTATGCCAAGGATAAAGACGGCGTGCCGCTCGCCTTCGCAGCCCT
GCGCTACTGCGGCGCTAACAACGGATACCATATTGATCCGTGCGTTGCGC
TGCCGACAGCTCCCAAGGGACTGACAGACCTGTTGATGTTTGCTGCGATG
GCGCTGTGTCGGCATGCCGGGGTGTCGTATCTGAGTGTTGGGTTTGAGCC
GTTAGAGGAGCTGGGTGAGGTGAGGGGGTTGAGGGGCCCGTTGGAGCATC
TGGCGAGAGGGGCATATCGCTTTGCGTTCAAGCGCTTGCCGTCCATACAG
GGAAAGAAGGCGTATCATGATAAGTGGAGGACGGAGGAGGGGTTGGAGGA
GAGGTTGTTTTTGGTCTTGACCGGGGCCGGAGGCGGGTTGGGGGTCGTGG
CTGTTACGCATGTTGCGAATGTGAAGATTAGGAGGGTGGTTTGGGGGTGA
TCAGCTTTGGCCATTTGGGAGGGGAGAAAAAGGGAAGGGGTGTAAGTAAG
TATGTTTCAGGGTTATTCTGGTTTCTTTGGTGTATATTCTGGATGATGGG
TGGATGGTGGGTGTATGATATGGTTTGGTTCGCATATTACGGAAATTTAT
CGCATATTAGTGTTAATTGAGCATATATATTCATTTCTGGATTCGGTACA
GCGAAGAATCACTACCAGACACCCTGCTACTTACTATCTAATATGGGACA
TGCCAGGGGTCCCAGTTGCGACGGGG back to topCoding sequence (CDS) from alignment at ch8:3816184..3818259+ >KJC3_012522-T1 ID=KJC3_012522-T1|Name=KJC3_012522-T1|organism=Aspergillus niger KJC3|type=CDS|length=1554bp|location=Sequence derived from alignment at ch8:3816184..3818259+ (Aspergillus niger KJC3)
ATGTCTCGAGTCCAAGTGCACTTCATCTGCTTGCACTCTCTCCTGTTCCT
ACTCTCTTCTATATGTACTTGTATTCTACATCTATTGAGCATATCAATCC
TACATACTTCATATGAATACTCCGACATGACTTCATCCAGCCCCCGCAAG
CAAAAGAAATCCCAGCAGTCCAGCACCAAGGTGCTGCTGGCCGACACCAT
CGGACAATCGCTGTACGAGCGTCTCCTGCAAGCCCGACTCGACTGTCCCG
TCACCCACTGGGCACCTGTGCACCATCCTCTCGCTCCTCAGCCCTCGTCT
ACCATCAACTGTAACCTCAGCATCAACAGCAGCAGCACCATCACCTCGTC
CCCATCAACCTCCACCTCCGACTTCAAAAGCATCCCCTCCAGCCGCACCA
GCCATGACTCTTTCCACAAACCCTCATCCTCACCCATCCACCCACCCCTC
CCCTCCAACCGCATCATATCCCTCGCCGGACCCATCACCACCTCCCTCCC
CATCCTCACCACCATCACCCACCTAGCCGCCAAGCACAGCCAAGTCTCAC
ACATGTCCCTCCTCGACCCGAGCTACACCATCTTCCTAAACACCACGCAC
ACCGCGGCGCTCTGCTTCAAAGTCGTGCACCAAACGGCCATCATAGCCGG
CGACCCCATCAGCTCCGAAGAGAACATCCCATCTCTCCTCTCCGAATTCA
AAACCTACCGCAAAGCCCACCTCCTCGGCATGGCCTTCCTAGGCGCCAGC
CCGCGTCTTACACACTACGCCGAAACCCAGACTTTAACCGGCAGCAAATC
CACCAACAACTGGACAATGCTCCACTTCGGGACCTCACGCGTCCTCAACC
CCACCACCAACGCCCTCCTCAACGAATCAACCGGAAAGCGTCTCCTCTTG
CAGAATAAACAACTCCTAAATCCAAACAAAGGCGGCATAACCCTAGACAT
ATACATCCCTGGCAGCAATACCACATTGGAAAATGAATTACAGGATATCT
ACACAACCTGGCGCACCACCCGCAACACATCCACCACCCCCCAAGCCTTC
ATCACCGAATACACCTCCCCGTTCTCGTCGACCCTCCTTCCATCCCTGAT
GACATATATCTATGCCAAGGATAAAGACGGCGTGCCGCTCGCCTTCGCAG
CCCTGCGCTACTGCGGCGCTAACAACGGATACCATATTGATCCGTGCGTT
GCGCTGCCGACAGCTCCCAAGGGACTGACAGACCTGTTGATGTTTGCTGC
GATGGCGCTGTGTCGGCATGCCGGGGTGTCGTATCTGAGTGTTGGGTTTG
AGCCGTTAGAGGAGCTGGGTGAGGTGAGGGGGTTGAGGGGCCCGTTGGAG
CATCTGGCGAGAGGGGCATATCGCTTTGCGTTCAAGCGCTTGCCGTCCAT
ACAGGGAAAGAAGGCGTATCATGATAAGTGGAGGACGGAGGAGGGGTTGG
AGGAGAGGTTGTTTTTGGTCTTGACCGGGGCCGGAGGCGGGTTGGGGGTC
GTGGCTGTTACGCATGTTGCGAATGTGAAGATTAGGAGGGTGGTTTGGGG
GTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012522-T1.utr5p1 | KJC3_012522-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012522-T1.utr3p1 | KJC3_012522-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR024320 |
| DBxref | PFAM:PF09924 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:3816184..3818259 + |
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