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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:3854655..3857234- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012536-T1 ID=KJC3_012536-T1|Name=KJC3_012536-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2580bp|location=Sequence derived from alignment at ch8:3854655..3857234- (Aspergillus niger KJC3)
CACGGACTTCATTCCATGGACTCCATCGAATTGGTCGGTCACCGTGCAGG
ATTCCCTTCGGCCTATCAGCTTGCTTGAACGCTTCGTTTTTAGGCTTTTC
TCGTTTCTTTCGGTCCCCTAACCCGCATGTTTCTGGACCGCTTCTAACAT
CCCCTTGGATCGAATATCAGAGCAATCACCACGTGCACGTGGATTCTCAG
CATGACTCACAGAAGGGGTGATCGATGCAGGAGTGTAGGGGAGGCTTGCA
TCGTCAAGCTGGATCTAAAAAGTACATATTAAGACAGGATGCAAGCCCGA
GAATAGCCAGAGACCCAGAAACAAACCCGGAAGTTGTTCCTGAGCAGCAT
CAGATCCAGTTCTCGAACAACGCTGCTCCACCGCTGCTTTTCCATTACCC
AACGGCAACTGCCAGTCACCCCATCCCTACATTCACCATTGAATTTTTAT
TCTTTTTTTATTACTGTTTTCTATTTTTTATTATCTCCCTTTTTTTCAAG
AAGACAATAAATCTAATAAAAGGCTATACTCCGCACTGTTTCTGCCCAGA
TTTCTCTTTTCTCCATCATTGCAATTTACCACTACAAACCTTACATCAGT
TGCTGATCCGTGGGTGAATTGGTGATTCGTTCGCCAATCCCCTTCTATAC
TACTAACTCCCACCACTGCGGGTTTCTTTGTATACAATCCTACACCTTGC
AATGGCCACCTCATCTATCATCACGCGCGGCTCCAGCTCCCTGGCCAATT
TCACGGTCCGCTCCCGCCCAAAAGTTGATATTATTCTCGCCAATCAAACG
GATGGTCTGGTCCCTTCATTCACCACCGGCGATACCATCAAAGGCACGGT
TACCATCACGGTCGATCATGACACTCGCTTTGATGACCTAGAGATCACAT
TTGAGGGTATGTTGGCTCGCACAATACCAGAAGGTTACCAGGAATAGTCT
TACTTACTGACTGGGTCAGGAACATCGAGGACCTCGGTGGAGCGCCAATC
GATGCCCGGCCGCACTGGGGCTTACCATACATTCCTCCGACTGCGACAGC
CCATCGATGAGACCGCATATCCCACCCCCCGGGTTCTTGAACCCGGGCGC
AACTACGAATTCCCCTTCACCTTTGTCGTGCCCGAGCGTCTACTGCCTCA
TATCTGTAACCACGCCAAAACCAATCTGCATGTCGAACAATCGCACACGC
TGCTGCCACCCACGTTTGGTGATCCCATGATTGCCAGCAACCGCAAATCG
GTCATCGATGACATGGCCCCCGAAATGTGCCGCATCTCCTATCTAGTTCG
TGTGACTCTCCAGAAAAAGCCCATGGCCCAGAACGCCTCGCCGGTTACGC
TAGTGTCTGTTGGGAAAAAGGTGCGGGTCATTCCTGCGGTCGATGAGGAG
CCACCCCTTAACGTGGAAGACAACGATGACTTGTACAGCGTCCGCAAAGA
AAAGGATGTGAAACGTGGTTTGATGAGGGGAAAGCTGGGCCGATTGGTGG
TGGCCGCTGCACAGCCCAAGCCAGTGCGGTTGAGTCCATCCGACACCGGG
AACTGCGATTCTGTGAGTACCGTTGCCACTATGCAGCTGCGCTTCGATCC
GGTGGGCGACGAGCAGCCCCCTCGCCTAGGCACCGTATGGAGCAAACTTC
GAGTGTCAACATTCTACAGCTCCGATCCTTGGGGAGATTATCCGTCTGCT
ACATGTATCAAATCCTGGGCGCAGATGGGGCGGGCCATGTACACCGAAAC
TGTACCACTGTCCACCATGTGTGTTGCATCGGCACAATGGACAAAGCACA
CCGACGCCGATCTCGAACGCCGTGACTCCATGCACTCGACTTCGTCTACT
GAATCTCTTCCCGGCCCATCTGCCTCGTTCGCCGGAAACACCTACTATAC
CGCGTCGGTTGTTGTTCCAATCACCCTCCCCAAAGCCAAGTCATTCGTGC
CGACGTTCTATTCCTGTTTGATCGCGCGCGCCTACGCCCTGGAGCTCAGC
ATTTCCTATCACGCCGCTAATTCCAGGATCCTGACTCCCACCACATCCTT
GAAGGTCCCACTGCAGCTGACTTGCGAGGCACAGCCAGGCGTCGGATCTA
AGGGCACCGTGGTCGACATTTCCCAGGATGAAGTGAACTCCCAATTTTTC
AGCCCTCGCAGCATTGCGCCCCCATCTGTCTCCGAGCTCGTCCCTATTGC
ACCACCCGAGTATACATCTGTCCAGGTCTCCAACCTGTCTCCTGACCGCT
CGAGAATGTTACCACCATCGGTGACCAATTCGGGCAGTGTTAGAGTTTAG
GGGCGCCGTGCTACTGCGTTGCTGCCAGGGCAACACAGAATTTCAAAGGA
GCGGATCCAGCTGTTGTGTTCTTTTCTTTTCATTGGCGTTTTGGTTTCAT
ATGGTTACAATATACCCAGGTCGCTTGTTTGCAAATTACGAGCAGAAAAG
TTTTGTCATTCGGGGATACCCAGCATAATGTTGATTTACCAGGCATTGCA
TTTTACTTGATTGGGAAACTGTATCCCATTACTCATAATTAATTAATGGA
TAGTCGTTAGAATTGAATCATAACCAACAG back to topCoding sequence (CDS) from alignment at ch8:3854655..3857234- >KJC3_012536-T1 ID=KJC3_012536-T1|Name=KJC3_012536-T1|organism=Aspergillus niger KJC3|type=CDS|length=3072bp|location=Sequence derived from alignment at ch8:3854655..3857234- (Aspergillus niger KJC3)
GAACATCGAGGACCTCGGTGGAGCGCCAATCGATGCCCGGCCGCACTGGG
GCTTACCATACATTCCTCCGACTGCGACAGCCCATCGATGAGACCGCATA
TCCCACCCCCCGGGTTCTTGAACCCGGGCGCAACTACGAATTCCCCTTCA
CCTTTGTCGTGCCCGAGCGTCTACTGCCTCATATCTGTAACCACGCCAAA
ACCAATCTGCATGTCGAACAATCGCACACGCTGCTGCCACCCACGTTTGG
TGATCCCATGATTGCCAGCAACCGCAAATCGGTCATCGATGACATGGCCC
CCGAAATGTGCCGCATCTCCTATCTAGTTCGTGTGACTCTCCAGAAAAAG
CCCATGGCCCAGAACGCCTCGCCGGTTACGCTAGTGTCTGTTGGGAAAAA
GGTGCGGGTCATTCCTGCGGTCGATGAGGAGCCACCCCTTAACGTGGAAG
ACAACGATGACTTGTACAGCGTCCGCAAAGAAAAGGATGTGAAACGTGGT
TTGATGAGGGGAAAGCTGGGCCGATTGGTGGTGGCCGCTGCACAGCCCAA
GCCAGTGCGGTTGAGTCCATCCGACACCGGGAACTGCGATTCTGTGAGTA
CCGTTGCCACTATGCAGCTGCGCTTCGATCCGGTGGGCGACGAGCAGCCC
CCTCGCCTAGGCACCGTATGGAGCAAACTTCGAGTGTCAACATTCTACAG
CTCCGATCCTTGGGGAGATTATCCGTCTGCTACATGTATCAAATCCTGGG
CGCAGATGGGGCGGGCCATGTACACCGAAACTGTACCACTGTCCACCATG
TGTGTTGCATCGGCACAATGGACAAAGCACACCGACGCCGATCTCGAACG
CCGTGACTCCATGCACTCGACTTCGTCTACTGAATCTCTTCCCGGCCCAT
CTGCCTCGTTCGCCGGAAACACCTACTATACCGCGTCGGTTGTTGTTCCA
ATCACCCTCCCCAAAGCCAAGTCATTCGTGCCGACGTTCTATTCCTGTTT
GATCGCGCGCGCCTACGCCCTGGAGCTCAGCATTTCCTATCACGCCGCTA
ATTCCAGGATCCTGACTCCCACCACATCCTTGAAGGTCCCACTGCAGCTG
ACTTGCGAGGCACAGCCAGGCGTCGGATCTAAGGGCACCGTGGTCGACAT
TTCCCAGGATGAAGTGAACTCCCAATTTTTCAGCCCTCGCAGCATTGCGC
CCCCATCTGTCTCCGAGCTCGTCCCTATTGCACCACCCGAGTATACATCT
GTCCAGGTCTCCAACCTGTCTCCTGACCGCTCGAGAATGTTACCACCATC
GGTGACCAATTCGGGCAGTGTTAGAGTTTAGATGGCCACCTCATCTATCA
TCACGCGCGGCTCCAGCTCCCTGGCCAATTTCACGGTCCGCTCCCGCCCA
AAAGTTGATATTATTCTCGCCAATCAAACGGATGGTCTGGTCCCTTCATT
CACCACCGGCGATACCATCAAAGGCACGGTTACCATCACGGTCGATCATG
ACACTCGCTTTGATGACCTAGAGATCACATTTGAGGGAACATCGAGGACC
TCGGTGGAGCGCCAATCGATGCCCGGCCGCACTGGGGCTTACCATACATT
CCTCCGACTGCGACAGCCCATCGATGAGACCGCATATCCCACCCCCCGGG
TTCTTGAACCCGGGCGCAACTACGAATTCCCCTTCACCTTTGTCGTGCCC
GAGCGTCTACTGCCTCATATCTGTAACCACGCCAAAACCAATCTGCATGT
CGAACAATCGCACACGCTGCTGCCACCCACGTTTGGTGATCCCATGATTG
CCAGCAACCGCAAATCGGTCATCGATGACATGGCCCCCGAAATGTGCCGC
ATCTCCTATCTAGTTCGTGTGACTCTCCAGAAAAAGCCCATGGCCCAGAA
CGCCTCGCCGGTTACGCTAGTGTCTGTTGGGAAAAAGGTGCGGGTCATTC
CTGCGGTCGATGAGGAGCCACCCCTTAACGTGGAAGACAACGATGACTTG
TACAGCGTCCGCAAAGAAAAGGATGTGAAACGTGGTTTGATGAGGGGAAA
GCTGGGCCGATTGGTGGTGGCCGCTGCACAGCCCAAGCCAGTGCGGTTGA
GTCCATCCGACACCGGGAACTGCGATTCTGTGAGTACCGTTGCCACTATG
CAGCTGCGCTTCGATCCGGTGGGCGACGAGCAGCCCCCTCGCCTAGGCAC
CGTATGGAGCAAACTTCGAGTGTCAACATTCTACAGCTCCGATCCTTGGG
GAGATTATCCGTCTGCTACATGTATCAAATCCTGGGCGCAGATGGGGCGG
GCCATGTACACCGAAACTGTACCACTGTCCACCATGTGTGTTGCATCGGC
ACAATGGACAAAGCACACCGACGCCGATCTCGAACGCCGTGACTCCATGC
ACTCGACTTCGTCTACTGAATCTCTTCCCGGCCCATCTGCCTCGTTCGCC
GGAAACACCTACTATACCGCGTCGGTTGTTGTTCCAATCACCCTCCCCAA
AGCCAAGTCATTCGTGCCGACGTTCTATTCCTGTTTGATCGCGCGCGCCT
ACGCCCTGGAGCTCAGCATTTCCTATCACGCCGCTAATTCCAGGATCCTG
ACTCCCACCACATCCTTGAAGGTCCCACTGCAGCTGACTTGCGAGGCACA
GCCAGGCGTCGGATCTAAGGGCACCGTGGTCGACATTTCCCAGGATGAAG
TGAACTCCCAATTTTTCAGCCCTCGCAGCATTGCGCCCCCATCTGTCTCC
GAGCTCGTCCCTATTGCACCACCCGAGTATACATCTGTCCAGGTCTCCAA
CCTGTCTCCTGACCGCTCGAGAATGTTACCACCATCGGTGACCAATTCGG
GCAGTGTTAGAGTTTAGATGGCCACCTCATCTATCATCACGCGCGGCTCC
AGCTCCCTGGCCAATTTCACGGTCCGCTCCCGCCCAAAAGTTGATATTAT
TCTCGCCAATCAAACGGATGGTCTGGTCCCTTCATTCACCACCGGCGATA
CCATCAAAGGCACGGTTACCATCACGGTCGATCATGACACTCGCTTTGAT
GACCTAGAGATCACATTTGAGG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012536-T1.utr3p1 | KJC3_012536-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012536-T1.utr5p1 | KJC3_012536-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR014752 |
| DBxref | InterPro:IPR011021 |
| DBxref | PFAM:PF00339 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:3854655..3857234 - |
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