You are here

Home

M747DRAFT_277104-T1, M747DRAFT_277104-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_277104-T1
Unique NameM747DRAFT_277104-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851908.1:372957..374279+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_277104-T1 ID=M747DRAFT_277104-T1|Name=M747DRAFT_277104-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1323bp|location=Sequence derived from alignment at KZ851908.1:372957..374279+ (Aspergillus niger ATCC 13496)
TCATTATCTACTGCTCCGCTTGACCTTTTCATTCCAATAATCAAAATCTA
CTTCTGATTTCAGCCAATCCGTGTTAATCACTTATCCCATTCCCTTGCTA
TTCCAATTACATCTTCTACTCTACCATCCACCATGCAGGCTGCCCAGCAG
TCCTGGGGTACGTCCATCCCCAACCCCATCCCCACCCCCACTCCATCTCA
CAGCACTCTAACCCCATAACCACAGAATTCGAAAATGCCGTCACCCTCAT
AGACCCCCACCGAGACGCGCTCTACAAATACGATGAAGAGACACACAAAG
CTCTTAGCGCTCAGCGCCCTTGGTCCAAAGACCCACACTACTTCAAATCG
ATCCGAATCTCCGCCGTCGCACTCCTCAAGATGGTAATGCACGCGCGGTC
CGGCGGCTCCCTCGAAGTAATGGGCCTAATGCAAGGCTATGTCCTGCCCG
AAACCTTCGTGGTAACCGACGCCTTCCGACTTCCCGTAGAGGGAACCGAA
ACGCGAGTCAACGCCCAAGACGAAGCCAACGAATACATGGTCTCATACCT
ACAGTCGTGCCGGGATGCAGGACGGATGGAAAATGCAGTGGGCTGGTACC
ACAGTCATCCCGGGTACGGGTGCTGGTTATCGGGCATTGATGTGACGACG
CAGGATATGCAGCAGCTCGGGGGACCGTTTGTGGCGGTGGTGGTTGATCC
AGAGAGGACGATCTCAGCAGGGAAGGTGGATATTGGGGCATTTAGGACGT
TTCCGAAGGATTATACGCCGCCGAAAGGGGAGGGGGGTAGTGGTGCTGGG
GAGGATGACTATCAGACGGTGCCGTTGAACAAGGCGGAGGACTTTGGGGC
ACATGCGTCACATTATTATTCGCTGGAGGTGTCGGTGTTTAAGAGTGCGT
TGGATACGGAGATTCTGTCGTTGCTGTGGAATAAGTATTGGGTTGCGACG
TTGAGTCAGAGTCCGTTGTTTACGACGAGGGATTATGGGAGTAAGCAGAT
GGTGGATTTGAGTCAGAAGATTAAGCGGGCCACGAGGGGCGTGGAGAGTA
GTGCTTCGCGAGGGAATCTGGCGCAAGTTAAGGATCCGCAGTTGGAGAGG
GTGGCGAGGGATGGGCAGCGGATTGTCTCGGAAGAAGTGAAGGGTTTGTT
GGCGGCGGAAGTGAAGATGAAGCTGTTTCAAAATGTTGGGGAGGGGAATA
GATCGGAGAAATCATGAGCTTGTGCTCAACTTCTGTTCTTATGAAAGGCT
TATGAAGGTTCATTTGAGAACAACTCTACTATGAATGACGAGATGACTTA
ATGGATACATTTGCTGCTTCTTT
back to top

Coding sequence (CDS) from alignment at KZ851908.1:372957..374279+

>M747DRAFT_277104-T1 ID=M747DRAFT_277104-T1|Name=M747DRAFT_277104-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2034bp|location=Sequence derived from alignment at KZ851908.1:372957..374279+ (Aspergillus niger ATCC 13496)
ATGCAGGCTGCCCAGCAGTCCTGGGAATTCGAAAATGCCGTCACCCTCAT
AGACCCCCACCGAGACGCGCTCTACAAATACGATGAAGAGACACACAAAG
CTCTTAGCGCTCAGCGCCCTTGGTCCAAAGACCCACACTACTTCAAATCG
ATCCGAATCTCCGCCGTCGCACTCCTCAAGATGGTAATGCACGCGCGGTC
CGGCGGCTCCCTCGAAGTAATGGGCCTAATGCAAGGCTATGTCCTGCCCG
AAACCTTCGTGGTAACCGACGCCTTCCGACTTCCCGTAGAGGGAACCGAA
ACGCGAGTCAACGCCCAAGACGAAGCCAACGAATACATGGTCTCATACCT
ACAGTCGTGCCGGGATGCAGGACGGATGGAAAATGCAGTGGGCTGGTACC
ACAGTCATCCCGGGTACGGGTGCTGGTTATCGGGCATTGATGTGACGACG
CAGGATATGCAGCAGCTCGGGGGACCGTTTGTGGCGGTGGTGGTTGATCC
AGAGAGGACGATCTCAGCAGGGAAGGTGGATATTGGGGCATTTAGGACGT
TTCCGAAGGATTATACGCCGCCGAAAGGGGAGGGGGGTAGTGGTGCTGGG
GAGGATGACTATCAGACGGTGCCGTTGAACAAGGCGGAGGACTTTGGGGC
ACATGCGTCACATTATTATTCGCTGGAGGTGTCGGTGTTTAAGAGTGCGT
TGGATACGGAGATTCTGTCGTTGCTGTGGAATAAGTATTGGGTTGCGACG
TTGAGTCAGAGTCCGTTGTTTACGACGAGGGATTATGGGAGTAAGCAGAT
GGTGGATTTGAGTCAGAAGATTAAGCGGGCCACGAGGGGCGTGGAGAGTA
GTGCTTCGCGAGGGAATCTGGCGCAAGTTAAGGATCCGCAGTTGGAGAGG
GTGGCGAGGGATGGGCAGCGGATTGTCTCGGAAGAAGTGAAGGGTTTGTT
GGCGGCGGAAGTGAAGATGAAGCTGTTTCAAAATGTTGGGGAGGGGAATA
GATCGGAGAAATCATGAATGCAGGCTGCCCAGCAGTCCTGGGAATTCGAA
AATGCCGTCACCCTCATAGACCCCCACCGAGACGCGCTCTACAAATACGA
TGAAGAGACACACAAAGCTCTTAGCGCTCAGCGCCCTTGGTCCAAAGACC
CACACTACTTCAAATCGATCCGAATCTCCGCCGTCGCACTCCTCAAGATG
GTAATGCACGCGCGGTCCGGCGGCTCCCTCGAAGTAATGGGCCTAATGCA
AGGCTATGTCCTGCCCGAAACCTTCGTGGTAACCGACGCCTTCCGACTTC
CCGTAGAGGGAACCGAAACGCGAGTCAACGCCCAAGACGAAGCCAACGAA
TACATGGTCTCATACCTACAGTCGTGCCGGGATGCAGGACGGATGGAAAA
TGCAGTGGGCTGGTACCACAGTCATCCCGGGTACGGGTGCTGGTTATCGG
GCATTGATGTGACGACGCAGGATATGCAGCAGCTCGGGGGACCGTTTGTG
GCGGTGGTGGTTGATCCAGAGAGGACGATCTCAGCAGGGAAGGTGGATAT
TGGGGCATTTAGGACGTTTCCGAAGGATTATACGCCGCCGAAAGGGGAGG
GGGGTAGTGGTGCTGGGGAGGATGACTATCAGACGGTGCCGTTGAACAAG
GCGGAGGACTTTGGGGCACATGCGTCACATTATTATTCGCTGGAGGTGTC
GGTGTTTAAGAGTGCGTTGGATACGGAGATTCTGTCGTTGCTGTGGAATA
AGTATTGGGTTGCGACGTTGAGTCAGAGTCCGTTGTTTACGACGAGGGAT
TATGGGAGTAAGCAGATGGTGGATTTGAGTCAGAAGATTAAGCGGGCCAC
GAGGGGCGTGGAGAGTAGTGCTTCGCGAGGGAATCTGGCGCAAGTTAAGG
ATCCGCAGTTGGAGAGGGTGGCGAGGGATGGGCAGCGGATTGTCTCGGAA
GAAGTGAAGGGTTTGTTGGCGGCGGAAGTGAAGATGAAGCTGTTTCAAAA
TGTTGGGGAGGGGAATAGATCGGAGAAATCATGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CSN5M747DRAFT_277104Aspergillus niger ATCC 13496gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_277104-T1.utr5p1M747DRAFT_277104-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_277104-T1.exon1M747DRAFT_277104-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_277104-T1.exon2M747DRAFT_277104-T1.exon2Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_277104-T1.cdsM747DRAFT_277104-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_277104-T1.utr3p1M747DRAFT_277104-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_277104-T1M747DRAFT_277104-T1-proteinAspergillus niger ATCC 13496polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263RDD
NoteMEROPS:MER0122119
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR040961
DBxrefInterPro:IPR000555
DBxrefPFAM:PF01398
DBxrefPFAM:PF18323
Productproteasome regulatory particle subunit RPN11
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851908.1supercontigKZ851908.1:372957..374279 +
Powered by Drupal