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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851935.1:70478..72378+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_286038-T1 ID=M747DRAFT_286038-T1|Name=M747DRAFT_286038-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1901bp|location=Sequence derived from alignment at KZ851935.1:70478..72378+ (Aspergillus niger ATCC 13496)
ATACGTGCCATGTCGGGATGCGGTCCGTTTAGCCGTAACATATCCGGGAT
CATGAAATTGAGAGATAGGCAGCATACAACTGCAAAAGGTATAAAGAGCT
CGTTCTTCTCCTCCGTCCATTATCACAGCATTCACATTCTTCACAGCAGA
ACTCAGAGGCTCAAGAGCTCAAGCAGTGAATCACAATGTCTTCCTTCCAA
GTCTACCGAGCAGCTCTGCTGCTCTCTATCCTTGCCACTGCCAATGCTCA
GCAGGTTGGCACCTACACCACTGAGACACATCCGTCTCTGACCTGGCAAA
CCTGCACCAGCGATGGCAGCTGCACTACCAACGACGGCGAGGTGGTCATC
GACGCCAATTGGCGTTGGGTGCACTCAACCTCCAGTGCCACCAACTGCTA
TACTGGCAACGAATGGGACACCTCAATCTGTACCGACGATGTGACCTGCG
CCGCGAACTGCGCGCTTGACGGTGCCACTTACGAGGCGACCTATGGTGTG
ACCACGTCCGGCAGCGAGCTGCGCCTGAACTTCGTCACTCAAGGCTCCAG
CAAGAACATCGGGTCTCGTTTGTACCTCATGAGCGACGACAGCAACTATG
AGCTGTTCAAGCTCCTCGGCCAGGAGTTCACCTTTGATGTCGACGTGTCC
AACCTTCCCTGCGGTCTCAACGGCGCGCTCTACTTCGTCGCCATGGACGC
TGACGGTGGCACCTCGGAGTATTCCGGCAACAAGGCCGGTGCCAAATACG
GAACCGGCTACTGCGACTCGCAGTGCCCTCGCGACCTGAAGTTCATCAAC
GGCGAAGCCAACTGCGACGGCTGGGAGCCGTCCAGCAACAACGTCAACAC
CGGAGTTGGCGACCACGGCTCCTGCTGCGCCGAGATGGACGTCTGGGAAG
CGAACAGCATCTCCAACGCCTTCACCGCGCACCCCTGCGACTCCGTCAGC
CAGACAATGTGCGACGGTGACTCCTGTGGTGGAACTTACAGCGCCAGCGG
CGACCGCTACAGCGGCACCTGCGACCCCGACGGCTGCGACTACAACCCCT
ACCGTCTAGGCAACACGGACTTTTACGGCCCCGGCCTGACCGTCGACACG
AACAGCCCCTTCACCGTCGTCACCCAGTTCATCACCGATGACGGCACCTC
CTCCGGCACCTTGACCGAGATCAAGCGGTTGTACGTGCAGAACGGCGAGG
TCATCGCCAACGGCGCCTCCACCTACTCCAGTGTCAACGGCAGCTCTATC
ACCTCCGCTTTCTGTGAATCAGAGAAGACGCTGTTCGGCGACGAGAATGT
CTTCGACAAGCACGGCGGTCTCGAGGGCATGGGCGAGGCTATGGCCAAGG
GCATGGTCTTGGTCTTGAGTCTTTGGGATGACTATGCCGCTGACATGCTC
TGGCTCGACAGCGACTACCCCGTTAACTCGTCGGCCTCGACCCCAGGTGT
GGCCCGCGGTACTTGTAGCACGGACTCGGGTGTCCCGGCTACGGTGGAGG
CGGAGTCGCCCAATGCCTATGTCACCTACTCGAACATCAAGTTCGGGCCT
ATTGGCTCGACTTACTCCAGTGGATCTTCTTCGGGGTCGGGGTCTAGCTC
CAGCTCGAGTTCGACTACCACTAAGGCCACTTCGACGACCTTGAAGACTA
CCTCGACCACCAGCAGTGGAAGCAGTTCGACCTCGGCGGCGCAGGCGTAT
GGACAGTGTGGTGGACAGGGCTGGACTGGTCCGACCACTTGTGTGAGTGG
GTACACTTGCACGTATGAGAATGCGTACTACTCGCAGTGTTTGTAGACCC
TACTTGAAGGGGGATGAAGATGGCAGCGCGGGGGAGAATAGCTAGTGATT
AGCAGTTAGCACACGTACTACAGTTTAGTCAAATTTAGGAAGCAATATGA
C back to topCoding sequence (CDS) from alignment at KZ851935.1:70478..72378+ >M747DRAFT_286038-T1 ID=M747DRAFT_286038-T1|Name=M747DRAFT_286038-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1611bp|location=Sequence derived from alignment at KZ851935.1:70478..72378+ (Aspergillus niger ATCC 13496)
ATGTCTTCCTTCCAAGTCTACCGAGCAGCTCTGCTGCTCTCTATCCTTGC
CACTGCCAATGCTCAGCAGGTTGGCACCTACACCACTGAGACACATCCGT
CTCTGACCTGGCAAACCTGCACCAGCGATGGCAGCTGCACTACCAACGAC
GGCGAGGTGGTCATCGACGCCAATTGGCGTTGGGTGCACTCAACCTCCAG
TGCCACCAACTGCTATACTGGCAACGAATGGGACACCTCAATCTGTACCG
ACGATGTGACCTGCGCCGCGAACTGCGCGCTTGACGGTGCCACTTACGAG
GCGACCTATGGTGTGACCACGTCCGGCAGCGAGCTGCGCCTGAACTTCGT
CACTCAAGGCTCCAGCAAGAACATCGGGTCTCGTTTGTACCTCATGAGCG
ACGACAGCAACTATGAGCTGTTCAAGCTCCTCGGCCAGGAGTTCACCTTT
GATGTCGACGTGTCCAACCTTCCCTGCGGTCTCAACGGCGCGCTCTACTT
CGTCGCCATGGACGCTGACGGTGGCACCTCGGAGTATTCCGGCAACAAGG
CCGGTGCCAAATACGGAACCGGCTACTGCGACTCGCAGTGCCCTCGCGAC
CTGAAGTTCATCAACGGCGAAGCCAACTGCGACGGCTGGGAGCCGTCCAG
CAACAACGTCAACACCGGAGTTGGCGACCACGGCTCCTGCTGCGCCGAGA
TGGACGTCTGGGAAGCGAACAGCATCTCCAACGCCTTCACCGCGCACCCC
TGCGACTCCGTCAGCCAGACAATGTGCGACGGTGACTCCTGTGGTGGAAC
TTACAGCGCCAGCGGCGACCGCTACAGCGGCACCTGCGACCCCGACGGCT
GCGACTACAACCCCTACCGTCTAGGCAACACGGACTTTTACGGCCCCGGC
CTGACCGTCGACACGAACAGCCCCTTCACCGTCGTCACCCAGTTCATCAC
CGATGACGGCACCTCCTCCGGCACCTTGACCGAGATCAAGCGGTTGTACG
TGCAGAACGGCGAGGTCATCGCCAACGGCGCCTCCACCTACTCCAGTGTC
AACGGCAGCTCTATCACCTCCGCTTTCTGTGAATCAGAGAAGACGCTGTT
CGGCGACGAGAATGTCTTCGACAAGCACGGCGGTCTCGAGGGCATGGGCG
AGGCTATGGCCAAGGGCATGGTCTTGGTCTTGAGTCTTTGGGATGACTAT
GCCGCTGACATGCTCTGGCTCGACAGCGACTACCCCGTTAACTCGTCGGC
CTCGACCCCAGGTGTGGCCCGCGGTACTTGTAGCACGGACTCGGGTGTCC
CGGCTACGGTGGAGGCGGAGTCGCCCAATGCCTATGTCACCTACTCGAAC
ATCAAGTTCGGGCCTATTGGCTCGACTTACTCCAGTGGATCTTCTTCGGG
GTCGGGGTCTAGCTCCAGCTCGAGTTCGACTACCACTAAGGCCACTTCGA
CGACCTTGAAGACTACCTCGACCACCAGCAGTGGAAGCAGTTCGACCTCG
GCGGCGCAGGCGTATGGACAGTGTGGTGGACAGGGCTGGACTGGTCCGAC
CACTTGTGTGAGTGGGTACACTTGCACGTATGAGAATGCGTACTACTCGC
AGTGTTTGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0030248 | cellulose binding |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-21) |
| Note | CAZy:GH7 |
| DBxref | InterPro:IPR035971 |
| DBxref | InterPro:IPR013320 |
| DBxref | InterPro:IPR037019 |
| DBxref | InterPro:IPR000254 |
| DBxref | InterPro:IPR001722 |
| DBxref | PFAM:PF00840 |
| DBxref | PFAM:PF00734 |
| Product | 4-beta-D-glucan cellobiohydrolase B precursor cbhB |
| Product | 1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851935.1 | supercontig | KZ851935.1:70478..72378 + |
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