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ASPNIDRAFT_201642-T1, ASPNIDRAFT_201642-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_201642-T1
Unique NameASPNIDRAFT_201642-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000002.1:1087593..1088844+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_201642-T1 ID=ASPNIDRAFT_201642-T1|Name=ASPNIDRAFT_201642-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1252bp|location=Sequence derived from alignment at ACJE01000002.1:1087593..1088844+ (Aspergillus niger ATCC 1015)
CTGTCTTTCGACCGCCCACAATGGCTGCCCTTCGCACGACCTCGCGCCTG
TTCGCTTCCTCGAAGCCGCTGTTCCGCCCAGGCGCCTTTTCTCGCTCCTA
TGCGACTGTTGACGCCCTTTCCCAGGTGAGCGCAAGCGGCCACGCGAGCA
GCAAGACCATTCCCGAATCTAAGACTTCGAATGTGCAGGACCCTAGCCCC
TCGGAGCAGCCCCGGGTCAAGACTTTCCATGTCTACCGTTGGAACCCCGA
TCAGCCCACCGAGAAGCCCAAGATGCAGACTTACTCCCTGGATCTGAACA
AGACCGGTCCCATGATGCTCGACGCGCTGATCCGCATCAAGAACGAGATG
GACCCCACCCTGACTTTCCGGAGAAGTTGCAGAGAGGGTATCTGTGGAAG
TTGCGCGATGAACATTGACGGTGTCAACACCCTGGCTTGCCTGTGTATGT
TGTCCTGGAGTGCTTGGTGCGATGTCCCGGCTTAGTAGCGCTAACTTTTT
GCTGTATAGGCCGTATCCCCACCGATACCGCCAAGGAGTCTCGCATCTAC
CCTCTGCCTCACACCTATGTCGTCAAGGACCTGGTTCCCGATTTGACCTA
CTTCTACAAGCAGTACAAGTCGATCAAGCCTTACCTGCAGCGCGACACCC
CGACCGCGGATGTAAGTGTTGACAGCGTGTGCGAGCGATGTGGGATTTTT
ACTGATAAATATATAGGGTCTCGAGAACCGCCAGAGCCCCGAGGAGCGTA
AGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTGCTGCTCTACC
TCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTGGACCCGCTAT
CCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGACGAGAAGACCG
CCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTACCGTTGCCAC
ACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGAACCCCGCACG
GGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAGAGAAGTGACA
CGAGATCTTAAAAAAGAATTGCTTTCTCTTTGTGCATTACGTCTTGTGTG
GCTGGGTATTTTTCCTTCTTTCCTATCCCATTTCTTTCTGATTTATTCGT
GTCTGAGCTTTATTCCCTCCATCCCCGAGGTCTTTCATGTTGGATGTGTT
TCAATAGGTGTAAATTGTGAATGTGATTTATAGCCATGGCGGTCAGCCAG
TG
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Coding sequence (CDS) from alignment at ACJE01000002.1:1087593..1088844+

>ASPNIDRAFT_201642-T1 ID=ASPNIDRAFT_201642-T1|Name=ASPNIDRAFT_201642-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2700bp|location=Sequence derived from alignment at ACJE01000002.1:1087593..1088844+ (Aspergillus niger ATCC 1015)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGTTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006099tricarboxylic acid cycle
Vocabulary: Molecular Function
TermDefinition
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH2ASPNIDRAFT_201642Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201642-T1ASPNIDRAFT_201642-T1-proteinAspergillus niger ATCC 1015polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201642-T1.utr5p1ASPNIDRAFT_201642-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201642-T1.exon1ASPNIDRAFT_201642-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_201642-T1.exon2ASPNIDRAFT_201642-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_201642-T1.exon3ASPNIDRAFT_201642-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201642-T1.cdsASPNIDRAFT_201642-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_201642-T1.utr3p1ASPNIDRAFT_201642-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263X1F
DBxrefInterPro:IPR036010
DBxrefInterPro:IPR017896
DBxrefInterPro:IPR001041
DBxrefInterPro:IPR006058
DBxrefInterPro:IPR017900
DBxrefInterPro:IPR012675
DBxrefInterPro:IPR004489
DBxrefInterPro:IPR009051
DBxrefInterPro:IPR025192
DBxrefPFAM:PF13183
DBxrefPFAM:PF13534
DBxrefPFAM:PF13237
DBxrefPFAM:PF13085
Product subunit B
Productsuccinate dehydrogenase complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000002.1supercontigACJE01000002.1:1087593..1088844 +
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