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ASPNIDRAFT_55252-T1, ASPNIDRAFT_55252-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_55252-T1
Unique NameASPNIDRAFT_55252-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:3287593..3288635+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_55252-T1 ID=ASPNIDRAFT_55252-T1|Name=ASPNIDRAFT_55252-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1043bp|location=Sequence derived from alignment at ACJE01000004.1:3287593..3288635+ (Aspergillus niger ATCC 1015)
CACCAACGACACCGTCCGCCACCTACACGTATCCCTCCCTCGGCAACAGG
TGCATACGTCGACCAAAATGTCTGAACACGGCGAAGTCGAGGTCGAAAAC
CCCGCTGCGGCCTTCCAGGTCCTGCCCAAGGAGGCTATCGCGGAGATGGG
ATCCGTGAAGCTGTTCAACAAGTGGAGCTACGAGGATGTTGAGATCAGGG
ACATCTCCTTGACGTAGGTGCTTCCCAATCCATCGCGATTTTGATTGTTC
TACGAGCATGGGTTTATGTCGACCGGTGGAAAAAACGCCATTATCTGTTG
GAAGACAGTGGACTCGGCATGCAGGGAGGAAAACGCACGACAATTCGGGA
TATCTGCGAAGGGAATCACGATGGAAAATTTTTTTGCGAAATGGCACAGA
AACGAGATATGCTGACTCGGCTTCACGTTCAATAGCGACTACGTCCAGAT
CCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATGCCGCCAAGC
GTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACCAACTCCCTC
ATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGTCCGCATCGT
TGCCCACGCCTTCGAGATCGTACGTCACCTATTTTCTGCCCCCATTGCCT
TCCGCACGCAGAACGGCTAGGGTCCGCAAAATCCCAGAACCAGACGCAGA
AAGCTGACCGGGTAATCTTTTCTAGATCCACATCATGACCGACCAGAACC
CTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAAGAC
AGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGATGT
GTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCGGTG
CTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTGGCT
GAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCATCAA
GAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAA
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Coding sequence (CDS) from alignment at ACJE01000004.1:3287593..3288635+

>ASPNIDRAFT_55252-T1 ID=ASPNIDRAFT_55252-T1|Name=ASPNIDRAFT_55252-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1944bp|location=Sequence derived from alignment at ACJE01000004.1:3287593..3288635+ (Aspergillus niger ATCC 1015)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGAC
TACGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTA
TGCCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGA
CCAACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCT
GTCCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCA
GAACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCG
AAGACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTC
GATGTGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCAT
CGGTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCC
TGGCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCC
ATCAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAAT
GTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGG
TCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAAC
AAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTA
CGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATG
CCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACC
AACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGT
CCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGA
ACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAA
GACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGA
TGTGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCG
GTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTG
GCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCAT
CAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAATGT
CTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGGTC
CTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAACAA
GTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTACG
TCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATGCC
GCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACCAA
CTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGTCC
GCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGAAC
CCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAAGA
CAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGATG
TGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCGGT
GCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTGGC
TGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCATCA
AGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS5ASPNIDRAFT_55252Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55252-T1.utr5p1ASPNIDRAFT_55252-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55252-T1.exon1ASPNIDRAFT_55252-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_55252-T1.exon2ASPNIDRAFT_55252-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_55252-T1.exon3ASPNIDRAFT_55252-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55252-T1.cdsASPNIDRAFT_55252-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55252-T1ASPNIDRAFT_55252-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000041.7
DBxrefInterPro:IPR020606
DBxrefInterPro:IPR023798
DBxrefInterPro:IPR036823
DBxrefInterPro:IPR000235
DBxrefInterPro:IPR005716
DBxrefPFAM:PF00177
Productribosomal protein S5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:3287593..3288635 +
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