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ASPNIDRAFT_211639-T1, ASPNIDRAFT_211639-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_211639-T1
Unique NameASPNIDRAFT_211639-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000006.1:377284..378225+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_211639-T1 ID=ASPNIDRAFT_211639-T1|Name=ASPNIDRAFT_211639-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=942bp|location=Sequence derived from alignment at ACJE01000006.1:377284..378225+ (Aspergillus niger ATCC 1015)
CTCACATTGCTTCCCGGCGTTTAAACCTTTTTTTCTTTATTCAATCCTTG
CTTGTCTAACGCCGAGCACTATGAGCACCCTCGTCCACAACACCGTCGAA
CGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGGTGAGCTTCATCTC
TACGACTAGCGGACCATGACAATACTAATTCATTAATCCTCTCCAGAACA
AGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATCCCACC
GACAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTGTATGTTAC
AGAGTATCTCCGTTGTCAAGTCCTTGCTAACAACACAAGTTCTTTTTACA
CCACCGAAGAGCAGATCCATGAGCTATTTGCCAAGTGAGCGGAAACCACC
ACCGAATGCGTTATCGACGAGTACCGAGCTGATGGAGTACAGGTGCGGCG
AGATTAAGCGGCTAGTCATGGGCCTTGACCGGTACAACAAGACCCCCTGC
GGATTTTGCTTCGTCGAATATTACACCCATCAGGATGCGCTGGACTGTCT
GAAATACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGGACGGATC
TGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGGTATGTATATGATCGG
GATTCTCGAACGCGCAGGCTGCTGACGTTGGTAGACGTGGTAAATCGGGT
GGTCAGGTCCGCGATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGG
CTATGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGT
ATGGTAAGGGTAAGTAAAACAGGGGAAGACAGACATATTCAGGTTGGCGC
AAAAACGGCGTTTTCATATGTACAATCTATTTCTATCATTGCTAGAAAGG
CATTCAAGAAAGAAAAATTTACATCAGATACCCCAATGCTAT
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Coding sequence (CDS) from alignment at ACJE01000006.1:377284..378225+

>ASPNIDRAFT_211639-T1 ID=ASPNIDRAFT_211639-T1|Name=ASPNIDRAFT_211639-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2655bp|location=Sequence derived from alignment at ACJE01000006.1:377284..378225+ (Aspergillus niger ATCC 1015)
ATGAGCACCCTCGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGC
CTACTATCTGGGCAAGAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCG
AGAAACCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTAC
GTTGGCAATCTTTCTTTTTACACCACCGAAGAGCAGATCCATGAGCTATT
TGCCAAGTGCGGCGAGATTAAGCGGCTAGTCATGGGCCTTGACCGGTACA
ACAAGACCCCCTGCGGATTTTGCTTCGTCGAATATTACACCCATCAGGAT
GCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAAT
CATCCGGACGGATCTGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGAC
GTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGAC
CCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACG
GGAGGAGGAGGAGTATGGTAAGGGTAAGTAAATGAGCACCCTCGTCCACA
ACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGAAC
AAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATCCCAC
CGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTTTCTTTTT
ACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAGTGCGGCGAGATT
AAGCGGCTAGTCATGGGCCTTGACCGGTACAACAAGACCCCCTGCGGATT
TTGCTTCGTCGAATATTACACCCATCAGGATGCGCTGGACTGTCTGAAAT
ACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGGACGGATCTGGAT
CCTGGCTTCGAGGAGGGTCGGCAATACGGACGTGGTAAATCGGGTGGTCA
GGTCCGCGATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGGCTATG
GACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGTATGGT
AAGGGTAAGTAAATGAGCACCCTCGTCCACAACACCGTCGAACGCCTGGA
CCGGCCGAGTGCCTACTATCTGGGCAAGAACAAGCGTCGCAAGTTCAGCC
ATGATGAGGGCGAGAAACCCGAAGATCCCACCGACAACCTCAAGGATGCC
ACCACTCTCTACGTTGGCAATCTTTCTTTTTACACCACCGAAGAGCAGAT
CCATGAGCTATTTGCCAAGTGCGGCGAGATTAAGCGGCTAGTCATGGGCC
TTGACCGGTACAACAAGACCCCCTGCGGATTTTGCTTCGTCGAATATTAC
ACCCATCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCT
GGACGAGAGAATCATCCGGACGGATCTGGATCCTGGCTTCGAGGAGGGTC
GGCAATACGGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGG
GAGGAATACGACCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGA
CCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGGTAAGTAAATGAGCA
CCCTCGTCCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTAT
CTGGGCAAGAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAACC
CGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCA
ATCTTTCTTTTTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAG
TGCGGCGAGATTAAGCGGCTAGTCATGGGCCTTGACCGGTACAACAAGAC
CCCCTGCGGATTTTGCTTCGTCGAATATTACACCCATCAGGATGCGCTGG
ACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGG
ACGGATCTGGATCCTGGCTTCGAGGAGGGTCGGCAATACGGACGTGGTAA
ATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGACCCTGGTC
GCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAG
GAGGAGTATGGTAAGGGTAAGTAAATGAGCACCCTCGTCCACAACACCGT
CGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGAACAAGCGTC
GCAAGTTCAGCCATGATGAGGGCGAGAAACCCGAAGATCCCACCGACAAC
CTCAAGGATGCCACCACTCTCTACGTTGGCAATCTTTCTTTTTACACCAC
CGAAGAGCAGATCCATGAGCTATTTGCCAAGTGCGGCGAGATTAAGCGGC
TAGTCATGGGCCTTGACCGGTACAACAAGACCCCCTGCGGATTTTGCTTC
GTCGAATATTACACCCATCAGGATGCGCTGGACTGTCTGAAATACATTGG
TGGCACAAAGCTGGACGAGAGAATCATCCGGACGGATCTGGATCCTGGCT
TCGAGGAGGGTCGGCAATACGGACGTGGTAAATCGGGTGGTCAGGTCCGC
GATGAGTACCGGGAGGAATACGACCCTGGTCGCGGTGGCTATGGACGTGC
CTATGCGGATGACCAGCGACGACGGGAGGAGGAGGAGTATGGTAAGGGTA
AGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBP20ASPNIDRAFT_211639Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_211639-T1ASPNIDRAFT_211639-T1-proteinAspergillus niger ATCC 1015polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_211639-T1.utr5p1ASPNIDRAFT_211639-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_211639-T1.exon1ASPNIDRAFT_211639-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_211639-T1.exon2ASPNIDRAFT_211639-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_211639-T1.exon3ASPNIDRAFT_211639-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_211639-T1.exon4ASPNIDRAFT_211639-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_211639-T1.exon5ASPNIDRAFT_211639-T1.exon5Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_211639-T1.cdsASPNIDRAFT_211639-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_211639-T1.utr3p1ASPNIDRAFT_211639-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264G04
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034148
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
ProductNuclear cap-binding protein subunit 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000006.1supercontigACJE01000006.1:377284..378225 +
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