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ASPNIDRAFT_209562-T1, ASPNIDRAFT_209562-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_209562-T1
Unique NameASPNIDRAFT_209562-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000009.1:1516584..1517502-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_209562-T1 ID=ASPNIDRAFT_209562-T1|Name=ASPNIDRAFT_209562-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=919bp|location=Sequence derived from alignment at ACJE01000009.1:1516584..1517502- (Aspergillus niger ATCC 1015)
GCCATCATCACCTTACCGAACCCCGATAGTTCAGGTCTTGATTGGCAGTC
CAGCCTCCCTTGCGGTACGCCTCTCCTTCCTCTCCTTTTCTTTCTTTGTC
TTTTCGTCGACGACAACTAACCTTCAGGTCCATCCAGCATCTCAAATCCC
ACCGGTCACCCCACCGTCTCAACTACAATTCAAGATGTCTTTCCAGAAGC
CTGAGAAGGATTTCGGCGAGGGCCCTGTACGTCTACCACCATACCATTAT
TATTATCATCATCATATATATACATGTCTCAATGCGATGGATATGGACAT
GGTATTTTATATATATTCAATTGCGACAGTACTAACAAGCAATTCCTGCT
ATTATAGAAGGTCCACAAGATCCGTATCACCCTCACCTCTCGCAAGGTCG
CCTCCCTTGAGAAGGTGTGCTCGGAGCTGATCGACCGTGCTCGCTCCAAG
TCCCTCCAGGTCAAGGGTCCCGTCCGTCTTCCCACCAAGACCCTTCACAT
CTCGACCCGTAAGACCCCCAACGGTGAGGGTTCCAAGACCTGGGACAAGT
ACGAGATGCGCATCCACAAGCGTCTCATCGAGTAAGCACCCCCCACCTCC
TCCTTTGAAGATGTTGGAAGGGAAAGGATGGAAAGCTAATATCTGTGTTC
AGCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGA
GGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAATGTACCCCTACC
TTCTCTGATGGTTTGGGTTCGTGACAGGGGTGGCGCGGACGATGAGGATA
TGTTTTGTGGTGCTGCTGCGGATGCAGGGTGCGTGCTAGGCATTCGTCGA
TACCCGCCAGTTCCTGGCTTGAAAATGAAAAAGTTCAAAAAGCAGTAAAA
CTATCACTCCTATTGAATT
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Coding sequence (CDS) from alignment at ACJE01000009.1:1516584..1517502-

>ASPNIDRAFT_209562-T1 ID=ASPNIDRAFT_209562-T1|Name=ASPNIDRAFT_209562-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1053bp|location=Sequence derived from alignment at ACJE01000009.1:1516584..1517502- (Aspergillus niger ATCC 1015)
CCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGG
CTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATC
CGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTC
GGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCG
TCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAAC
GGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCG
TCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCC
TCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAG
GCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGAT
CCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCT
CGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCC
GTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAA
CGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGC
GTCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCC
CTCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGA
GGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGA
TCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGC
TCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCC
CGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCA
ACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAG
CGTCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGC
CCT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS20ASPNIDRAFT_209562Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209562-T1ASPNIDRAFT_209562-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209562-T1.cdsASPNIDRAFT_209562-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209562-T1.utr3p1ASPNIDRAFT_209562-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209562-T1.exon4ASPNIDRAFT_209562-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209562-T1.exon3ASPNIDRAFT_209562-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209562-T1.exon2ASPNIDRAFT_209562-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_209562-T1.exon1ASPNIDRAFT_209562-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_209562-T1.utr5p2ASPNIDRAFT_209562-T1.utr5p2Aspergillus niger ATCC 1015five_prime_UTR
ASPNIDRAFT_209562-T1.utr5p1ASPNIDRAFT_209562-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09265CFP
DBxrefInterPro:IPR018268
DBxrefInterPro:IPR036838
DBxrefInterPro:IPR005729
DBxrefInterPro:IPR027486
DBxrefInterPro:IPR001848
DBxrefPFAM:PF00338
Product40S ribosomal protein S20
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000009.1supercontigACJE01000009.1:1516584..1517502 -
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