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ASPNIDRAFT_52362-T1, ASPNIDRAFT_52362-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_52362-T1
Unique NameASPNIDRAFT_52362-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000010.1:2394287..2395531+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_52362-T1 ID=ASPNIDRAFT_52362-T1|Name=ASPNIDRAFT_52362-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1245bp|location=Sequence derived from alignment at ACJE01000010.1:2394287..2395531+ (Aspergillus niger ATCC 1015)
CGACAAGTGCCAGACGATTGATATACTCAAATCGATCTTTGCAATATCAA
TCGCCCACCATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTC
CCAGGACATTGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGA
ACCTCCAGTCTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGT
GTCAATGTCATCAACATTGGCAAGACCTGGTATGTTGATCAGGCGATATA
TTGCGCGCAACTCATTTAGGATCGCTGCCTAACACCGCGCGAAAACTTAG
GGAGAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGG
CCGACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTG
AAGTTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCC
CGGTAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGA
TCATCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGC
TACGTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGA
CTTCGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCG
GTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACC
CTCGCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTA
CCGTGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTG
CCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGT
GAGAACTGGGATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTT
CGCTGCTGCTAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTG
GCGACTGGGCTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAG
GCCCAGCCCACCGAGGCTAAGTGGTAAACATCTGGACTTGGCAACAAGGA
TTGACGAAACAATGGCGATTGGTTGAGGGTGACGAGGACCCCTTGATCAT
CAAGGAACGACTTTTACGCGATTCCTTGCAATGAAAGAAAACAAAATCCC
TTGTCGTGTCTATCCTAGTCTCAGTTCAGGTATTCCAAAAAGACAAAGAA
GAAAAAACGAGGAAAAGAATCAACGGGAGCTTCACTACTTCAAAA
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Coding sequence (CDS) from alignment at ACJE01000010.1:2394287..2395531+

>ASPNIDRAFT_52362-T1 ID=ASPNIDRAFT_52362-T1|Name=ASPNIDRAFT_52362-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1794bp|location=Sequence derived from alignment at ACJE01000010.1:2394287..2395531+ (Aspergillus niger ATCC 1015)
ATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACAT
TGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGT
CTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTC
ATCAACATTGGCAAGACCTGGGAGAAGATCCTCCTCGCTGCCCGTATCAT
CGCCGCCATCGACAACCCGGCCGACATCTGTGTCATCTCCGCTCGTCCCT
ACGGCCAGCGTGCTGTCCTGAAGTTCGCCTCCCACACCGGTGCTACCGCC
ATTGCTGGTCGTTTCACCCCCGGTAACTTCACCAACTACATCACCCGCTC
TTTCAAGGAGCCCCGCCTGATCATCGTCACCGACCCTCGCACCGACGCCC
AGGCCATCAAGGAGGCCAGCTACGTCAACATCCCCGTCATTGCCCTTTGC
GACACTGACTCCCCCACCGACTTCGTTGACGTTGCTATCCCCACCAACAA
CAAGGGTCGCCACGCCATCGGTCTCGTCTGGTGGCTCCTTGCCCGTGAGG
TCCTCCGCCTCCGTGGTACCCTCGCTTCCCGTGAGGTTGACTGGGACGTC
GTTGTCGACCTGTACTTCTACCGTGACCCCGAGGCTGAGGAGAACAAGGA
GGTCGTCGAGGAGAAGGTTGCCAGCGCTGAGGAGGTCGGTGCTGGTGCCA
TCGAGTCCGGCTTCGCTGGTGAGAACTGGGATGTTGCCGGTGCCGGTGCC
GGTGTTCCTGGCACTGCTTTCGCTGCTGCTAGCGCTGCTGCTGGTGCTGC
CAGCTGGGAGGCCGAGGGTGGCGACTGGGCTGCCAGCTCTGCCGCTCCTG
CTGGTGAGAGCTGGGCTGAGGCCCAGCCCACCGAGGCTAAGTGGTAAATG
GCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACATTGA
GATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGTCTC
ACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTCATC
AACATTGGCAAGACCTGGGAGAAGATCCTCCTCGCTGCCCGTATCATCGC
CGCCATCGACAACCCGGCCGACATCTGTGTCATCTCCGCTCGTCCCTACG
GCCAGCGTGCTGTCCTGAAGTTCGCCTCCCACACCGGTGCTACCGCCATT
GCTGGTCGTTTCACCCCCGGTAACTTCACCAACTACATCACCCGCTCTTT
CAAGGAGCCCCGCCTGATCATCGTCACCGACCCTCGCACCGACGCCCAGG
CCATCAAGGAGGCCAGCTACGTCAACATCCCCGTCATTGCCCTTTGCGAC
ACTGACTCCCCCACCGACTTCGTTGACGTTGCTATCCCCACCAACAACAA
GGGTCGCCACGCCATCGGTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCC
TCCGCCTCCGTGGTACCCTCGCTTCCCGTGAGGTTGACTGGGACGTCGTT
GTCGACCTGTACTTCTACCGTGACCCCGAGGCTGAGGAGAACAAGGAGGT
CGTCGAGGAGAAGGTTGCCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCG
AGTCCGGCTTCGCTGGTGAGAACTGGGATGTTGCCGGTGCCGGTGCCGGT
GTTCCTGGCACTGCTTTCGCTGCTGCTAGCGCTGCTGCTGGTGCTGCCAG
CTGGGAGGCCGAGGGTGGCGACTGGGCTGCCAGCTCTGCCGCTCCTGCTG
GTGAGAGCTGGGCTGAGGCCCAGCCCACCGAGGCTAAGTGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS0ASPNIDRAFT_52362Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_52362-T1.utr5p1ASPNIDRAFT_52362-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_52362-T1.exon1ASPNIDRAFT_52362-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_52362-T1.exon2ASPNIDRAFT_52362-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_52362-T1.cdsASPNIDRAFT_52362-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_52362-T1.utr3p1ASPNIDRAFT_52362-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_52362-T1ASPNIDRAFT_52362-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR023591
DBxrefInterPro:IPR027498
DBxrefInterPro:IPR018130
DBxrefInterPro:IPR032281
DBxrefInterPro:IPR005707
DBxrefInterPro:IPR001865
DBxrefPFAM:PF16122
Productstructural constituent of ribosome
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000010.1supercontigACJE01000010.1:2394287..2395531 +
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