You are here

Home

ASPNIDRAFT_56454-T1, ASPNIDRAFT_56454-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_56454-T1
Unique NameASPNIDRAFT_56454-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000013.1:987376..989192-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_56454-T1 ID=ASPNIDRAFT_56454-T1|Name=ASPNIDRAFT_56454-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1817bp|location=Sequence derived from alignment at ACJE01000013.1:987376..989192- (Aspergillus niger ATCC 1015)
CCACGGCAGGTCTACGGTCGCATAACCCCGGGAAATTGAGACGCGACCTC
GATAAGTCGCACGTAAAGGACCGTTTTGTCTAATTTTTAGGGCCCTTCCC
TCAATTTCGCAATGGCCGACTACCTTCTGTTCGAGGGCCCCATGGGCTAC
TCGCTTTTCAAGGTCGCCCACCAGGGTGACAGCGTTGGAAACCGCTTGAA
GGAGGTTCAAGAAGGTGTTAACGACTTGGCCAGTTTTGGTAAAATGGTCG
AACTGTCCAGTTTCCTGCCTTTCGAGTATGTGGTTCAATTTTTCCCATAG
GATCACTTTCCCGCAGGAATCTGACAACTTCCAGGAACAACAAGCAGGCT
CTCAGTGAAATCAACGATGTCTCCGAGGGTGTCGCTTCGGACACTCTGAT
CTCTTTCCTCGAATTGAACTTGCCCAAGCCTAACAAGAAGAAGAAGGTTG
TTCTGGGTCTTGCCGACAAGGCCTTGGCTGGAAGTATCAAGTCTGCCTTC
TCTTTCGTTGACTGCGAGACTGGAGACACCAGCGAAGTCGTCCAGGATAT
GCTTCGTGGAGTTAGACTGCACGCCACCAAGCTGCTGAAGCAGCTGCGTG
AGGGTGATATGGACACCGCTCAGCTTGGTCTTGGTCACGCTTACTCTCGC
GCCAAGGTTAAGTTTTCCGTTCAGCGCGATGACAACCACATCATCCAGGC
CATTGCTATCCTCGACCAGCTCGACAAGGCCATCAACACTTTCTCCATGA
GAGTCAGGGAATGGTACTCCTGGCACTTCCCCGAACTCTACAAGATTGTC
TCCGACAACCAACGCTACGCGCAGATTGCCTTGTTCGTCCAGGACAAGAA
GAGCTTGAACGACGAGAAGTTGCACGACATTGCTGCCCTTGTGGAGGATG
ATGAGGGTGTCGCCCAGAGTATCATCGACGCTGCTAAGCACAGCATGGGT
CAGGAGATCTCCGAGACCGACATGGAGAACGTTATCTCTTTCGCCCAGCG
CGTTGTCAGCCTGTCCAAGTACCGCAAGTCTCTCCACCAGTACCTGATTT
CCAAGATGAGCGTTGTCGCCCCCAACCTTGCTGCCCTTATTGGTGAGATC
GTTGGTGCTCGCTTGATCTCCCACGCTGGTAGCTTGACCAACCTGTCCAA
GTACCCCGCTTCGACGGTTCAGATTCTCGGTGCTGAGAAGGCCCTCTTCA
GAGCCTTGAAGACCAAGGGCAACACCCCCAAGTACGGTCTTCTGTACCAC
TCCTCTTTCATTGGAAGAGCTGGTCCCAAGAACAAGGGTCGCATCTCTCG
CTTCCTTGCCAACAAGTGCTCCATCGCCTCCAGAATTGACAACTTCTCCG
AGGAGCCCTCCACCAAGTTCGGAGAGGCCCTTAAGAAGCAGGTTGAGGAG
CGTCTGGACTTCTACGCCACTGGTGCTGCCCCTACCAAGAACGAAGTCGC
CATGGTAAGTCAACATAGCTAGTGTGATCGCTAGGACACTAGTGAACCAC
AAACCCCTTTTCTCCGTAACAATCACTGATGGTCCTTACAGAAAAACGCC
ATGGATGCTGTCCTTGCTGATATGGACATTGACGGCGCTGAGAGCGATGC
CGAGATGCAGGATGCTGATGAGAAGGCCGAGAAGAAGGACAAGAAGGAGA
AGAAGGAAAAGAAGGACAAGAAGGAAAAGAAGGAGAAGAAGGAAAAGGGC
GAGAAGGAGGAGAAGAAGAAGAAGCGCAAGTCCGACGTTGGCGAGGGCGA
GTCCGAGAAGAAGAAGCGGAAGCACGACAGCGATGCTGAGCCGTCCAAAA
AGAAGAAGAAGGTTTAA
back to top

Coding sequence (CDS) from alignment at ACJE01000013.1:987376..989192-

>ASPNIDRAFT_56454-T1 ID=ASPNIDRAFT_56454-T1|Name=ASPNIDRAFT_56454-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4680bp|location=Sequence derived from alignment at ACJE01000013.1:987376..989192- (Aspergillus niger ATCC 1015)
AAAAACGCCATGGATGCTGTCCTTGCTGATATGGACATTGACGGCGCTGA
GAGCGATGCCGAGATGCAGGATGCTGATGAGAAGGCCGAGAAGAAGGACA
AGAAGGAGAAGAAGGAAAAGAAGGACAAGAAGGAAAAGAAGGAGAAGAAG
GAAAAGGGCGAGAAGGAGGAGAAGAAGAAGAAGCGCAAGTCCGACGTTGG
CGAGGGCGAGTCCGAGAAGAAGAAGCGGAAGCACGACAGCGATGCTGAGC
CGTCCAAAAAGAAGAAGAAGGTTTAAGAACAACAAGCAGGCTCTCAGTGA
AATCAACGATGTCTCCGAGGGTGTCGCTTCGGACACTCTGATCTCTTTCC
TCGAATTGAACTTGCCCAAGCCTAACAAGAAGAAGAAGGTTGTTCTGGGT
CTTGCCGACAAGGCCTTGGCTGGAAGTATCAAGTCTGCCTTCTCTTTCGT
TGACTGCGAGACTGGAGACACCAGCGAAGTCGTCCAGGATATGCTTCGTG
GAGTTAGACTGCACGCCACCAAGCTGCTGAAGCAGCTGCGTGAGGGTGAT
ATGGACACCGCTCAGCTTGGTCTTGGTCACGCTTACTCTCGCGCCAAGGT
TAAGTTTTCCGTTCAGCGCGATGACAACCACATCATCCAGGCCATTGCTA
TCCTCGACCAGCTCGACAAGGCCATCAACACTTTCTCCATGAGAGTCAGG
GAATGGTACTCCTGGCACTTCCCCGAACTCTACAAGATTGTCTCCGACAA
CCAACGCTACGCGCAGATTGCCTTGTTCGTCCAGGACAAGAAGAGCTTGA
ACGACGAGAAGTTGCACGACATTGCTGCCCTTGTGGAGGATGATGAGGGT
GTCGCCCAGAGTATCATCGACGCTGCTAAGCACAGCATGGGTCAGGAGAT
CTCCGAGACCGACATGGAGAACGTTATCTCTTTCGCCCAGCGCGTTGTCA
GCCTGTCCAAGTACCGCAAGTCTCTCCACCAGTACCTGATTTCCAAGATG
AGCGTTGTCGCCCCCAACCTTGCTGCCCTTATTGGTGAGATCGTTGGTGC
TCGCTTGATCTCCCACGCTGGTAGCTTGACCAACCTGTCCAAGTACCCCG
CTTCGACGGTTCAGATTCTCGGTGCTGAGAAGGCCCTCTTCAGAGCCTTG
AAGACCAAGGGCAACACCCCCAAGTACGGTCTTCTGTACCACTCCTCTTT
CATTGGAAGAGCTGGTCCCAAGAACAAGGGTCGCATCTCTCGCTTCCTTG
CCAACAAGTGCTCCATCGCCTCCAGAATTGACAACTTCTCCGAGGAGCCC
TCCACCAAGTTCGGAGAGGCCCTTAAGAAGCAGGTTGAGGAGCGTCTGGA
CTTCTACGCCACTGGTGCTGCCCCTACCAAGAACGAAGTCGCCATGATGG
CCGACTACCTTCTGTTCGAGGGCCCCATGGGCTACTCGCTTTTCAAGGTC
GCCCACCAGGGTGACAGCGTTGGAAACCGCTTGAAGGAGGTTCAAGAAGG
TGTTAACGACTTGGCCAGTTTTGGTAAAATGGTCGAACTGTCCAGTTTCC
TGCCTTTCGAAAAAACGCCATGGATGCTGTCCTTGCTGATATGGACATTG
ACGGCGCTGAGAGCGATGCCGAGATGCAGGATGCTGATGAGAAGGCCGAG
AAGAAGGACAAGAAGGAGAAGAAGGAAAAGAAGGACAAGAAGGAAAAGAA
GGAGAAGAAGGAAAAGGGCGAGAAGGAGGAGAAGAAGAAGAAGCGCAAGT
CCGACGTTGGCGAGGGCGAGTCCGAGAAGAAGAAGCGGAAGCACGACAGC
GATGCTGAGCCGTCCAAAAAGAAGAAGAAGGTTTAAGAACAACAAGCAGG
CTCTCAGTGAAATCAACGATGTCTCCGAGGGTGTCGCTTCGGACACTCTG
ATCTCTTTCCTCGAATTGAACTTGCCCAAGCCTAACAAGAAGAAGAAGGT
TGTTCTGGGTCTTGCCGACAAGGCCTTGGCTGGAAGTATCAAGTCTGCCT
TCTCTTTCGTTGACTGCGAGACTGGAGACACCAGCGAAGTCGTCCAGGAT
ATGCTTCGTGGAGTTAGACTGCACGCCACCAAGCTGCTGAAGCAGCTGCG
TGAGGGTGATATGGACACCGCTCAGCTTGGTCTTGGTCACGCTTACTCTC
GCGCCAAGGTTAAGTTTTCCGTTCAGCGCGATGACAACCACATCATCCAG
GCCATTGCTATCCTCGACCAGCTCGACAAGGCCATCAACACTTTCTCCAT
GAGAGTCAGGGAATGGTACTCCTGGCACTTCCCCGAACTCTACAAGATTG
TCTCCGACAACCAACGCTACGCGCAGATTGCCTTGTTCGTCCAGGACAAG
AAGAGCTTGAACGACGAGAAGTTGCACGACATTGCTGCCCTTGTGGAGGA
TGATGAGGGTGTCGCCCAGAGTATCATCGACGCTGCTAAGCACAGCATGG
GTCAGGAGATCTCCGAGACCGACATGGAGAACGTTATCTCTTTCGCCCAG
CGCGTTGTCAGCCTGTCCAAGTACCGCAAGTCTCTCCACCAGTACCTGAT
TTCCAAGATGAGCGTTGTCGCCCCCAACCTTGCTGCCCTTATTGGTGAGA
TCGTTGGTGCTCGCTTGATCTCCCACGCTGGTAGCTTGACCAACCTGTCC
AAGTACCCCGCTTCGACGGTTCAGATTCTCGGTGCTGAGAAGGCCCTCTT
CAGAGCCTTGAAGACCAAGGGCAACACCCCCAAGTACGGTCTTCTGTACC
ACTCCTCTTTCATTGGAAGAGCTGGTCCCAAGAACAAGGGTCGCATCTCT
CGCTTCCTTGCCAACAAGTGCTCCATCGCCTCCAGAATTGACAACTTCTC
CGAGGAGCCCTCCACCAAGTTCGGAGAGGCCCTTAAGAAGCAGGTTGAGG
AGCGTCTGGACTTCTACGCCACTGGTGCTGCCCCTACCAAGAACGAAGTC
GCCATGATGGCCGACTACCTTCTGTTCGAGGGCCCCATGGGCTACTCGCT
TTTCAAGGTCGCCCACCAGGGTGACAGCGTTGGAAACCGCTTGAAGGAGG
TTCAAGAAGGTGTTAACGACTTGGCCAGTTTTGGTAAAATGGTCGAACTG
TCCAGTTTCCTGCCTTTCGAAAAAACGCCATGGATGCTGTCCTTGCTGAT
ATGGACATTGACGGCGCTGAGAGCGATGCCGAGATGCAGGATGCTGATGA
GAAGGCCGAGAAGAAGGACAAGAAGGAGAAGAAGGAAAAGAAGGACAAGA
AGGAAAAGAAGGAGAAGAAGGAAAAGGGCGAGAAGGAGGAGAAGAAGAAG
AAGCGCAAGTCCGACGTTGGCGAGGGCGAGTCCGAGAAGAAGAAGCGGAA
GCACGACAGCGATGCTGAGCCGTCCAAAAAGAAGAAGAAGGTTTAAGAAC
AACAAGCAGGCTCTCAGTGAAATCAACGATGTCTCCGAGGGTGTCGCTTC
GGACACTCTGATCTCTTTCCTCGAATTGAACTTGCCCAAGCCTAACAAGA
AGAAGAAGGTTGTTCTGGGTCTTGCCGACAAGGCCTTGGCTGGAAGTATC
AAGTCTGCCTTCTCTTTCGTTGACTGCGAGACTGGAGACACCAGCGAAGT
CGTCCAGGATATGCTTCGTGGAGTTAGACTGCACGCCACCAAGCTGCTGA
AGCAGCTGCGTGAGGGTGATATGGACACCGCTCAGCTTGGTCTTGGTCAC
GCTTACTCTCGCGCCAAGGTTAAGTTTTCCGTTCAGCGCGATGACAACCA
CATCATCCAGGCCATTGCTATCCTCGACCAGCTCGACAAGGCCATCAACA
CTTTCTCCATGAGAGTCAGGGAATGGTACTCCTGGCACTTCCCCGAACTC
TACAAGATTGTCTCCGACAACCAACGCTACGCGCAGATTGCCTTGTTCGT
CCAGGACAAGAAGAGCTTGAACGACGAGAAGTTGCACGACATTGCTGCCC
TTGTGGAGGATGATGAGGGTGTCGCCCAGAGTATCATCGACGCTGCTAAG
CACAGCATGGGTCAGGAGATCTCCGAGACCGACATGGAGAACGTTATCTC
TTTCGCCCAGCGCGTTGTCAGCCTGTCCAAGTACCGCAAGTCTCTCCACC
AGTACCTGATTTCCAAGATGAGCGTTGTCGCCCCCAACCTTGCTGCCCTT
ATTGGTGAGATCGTTGGTGCTCGCTTGATCTCCCACGCTGGTAGCTTGAC
CAACCTGTCCAAGTACCCCGCTTCGACGGTTCAGATTCTCGGTGCTGAGA
AGGCCCTCTTCAGAGCCTTGAAGACCAAGGGCAACACCCCCAAGTACGGT
CTTCTGTACCACTCCTCTTTCATTGGAAGAGCTGGTCCCAAGAACAAGGG
TCGCATCTCTCGCTTCCTTGCCAACAAGTGCTCCATCGCCTCCAGAATTG
ACAACTTCTCCGAGGAGCCCTCCACCAAGTTCGGAGAGGCCCTTAAGAAG
CAGGTTGAGGAGCGTCTGGACTTCTACGCCACTGGTGCTGCCCCTACCAA
GAACGAAGTCGCCATGATGGCCGACTACCTTCTGTTCGAGGGCCCCATGG
GCTACTCGCTTTTCAAGGTCGCCCACCAGGGTGACAGCGTTGGAAACCGC
TTGAAGGAGGTTCAAGAAGGTGTTAACGACTTGGCCAGTTTTGGTAAAAT
GGTCGAACTGTCCAGTTTCCTGCCTTTCGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NOP56ASPNIDRAFT_56454Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56454-T1ASPNIDRAFT_56454-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56454-T1.cdsASPNIDRAFT_56454-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56454-T1.exon3ASPNIDRAFT_56454-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56454-T1.exon2ASPNIDRAFT_56454-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56454-T1.exon1ASPNIDRAFT_56454-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56454-T1.utr5p1ASPNIDRAFT_56454-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036070
DBxrefInterPro:IPR042239
DBxrefInterPro:IPR029012
DBxrefInterPro:IPR012974
DBxrefInterPro:IPR002687
DBxrefInterPro:IPR012976
DBxrefPFAM:PF08156
DBxrefPFAM:PF01798
ProductsnoRNP complex protein nop56
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000013.1supercontigACJE01000013.1:987376..989192 -
Powered by Drupal