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ASPNIDRAFT_202763-T1, ASPNIDRAFT_202763-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_202763-T1
Unique NameASPNIDRAFT_202763-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000020.1:1593409..1593840+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_202763-T1 ID=ASPNIDRAFT_202763-T1|Name=ASPNIDRAFT_202763-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=432bp|location=Sequence derived from alignment at ACJE01000020.1:1593409..1593840+ (Aspergillus niger ATCC 1015)
CAGCCCTTGTTCAGAGCTTAAAGATAGGAGGAGAGAAAGTACAACAAAAT
GGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGGTG
AAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCTAT
AAAGGTGAACGATCATATTCTGCTTTGTTCTACCTACCATTTCTGCCAGT
ATCGTATCTTTTTCCCCTGGTACAGGAGAAGGGAACCACTCTTATGGGGG
ACAGGAGATAGATACAATCGAAGAACAGGAATATTAAAATGCTAACGAAC
TCTTCAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTGGA
GAAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGATG
CCTTCATTCGTGGAAATAATGGTTTGTTATGT
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Coding sequence (CDS) from alignment at ACJE01000020.1:1593409..1593840+

>ASPNIDRAFT_202763-T1 ID=ASPNIDRAFT_202763-T1|Name=ASPNIDRAFT_202763-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=462bp|location=Sequence derived from alignment at ACJE01000020.1:1593409..1593840+ (Aspergillus niger ATCC 1015)
ATGGAGAACGGTGCCTCATCTGATGGCAAGGATCCCTCAGCTTTTCTGGG
TGAAATCATTGGCGCCCCAGTTACTGTTAAATTGAACTCAGGCGTTGTCT
ATAAAGGGGAACTTCAATCGGTAGATGGCTATATGAATATCGCTCTGGAG
AAATCTGAGGAGTTTGTTAATGGAAAATTGTCCCGCAGTTACGGGGATGC
CTTCATTCGTGGAAATAATGGTTTGTTATGTATGGAGAACGGTGCCTCAT
CTGATGGCAAGGATCCCTCAGCTTTTCTGGGTGAAATCATTGGCGCCCCA
GTTACTGTTAAATTGAACTCAGGCGTTGTCTATAAAGGGGAACTTCAATC
GGTAGATGGCTATATGAATATCGCTCTGGAGAAATCTGAGGAGTTTGTTA
ATGGAAAATTGTCCCGCAGTTACGGGGATGCCTTCATTCGTGGAAATAAT
GGTTTGTTATGT
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005732small nucleolar ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM6ASPNIDRAFT_202763Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202763-T1.utr5p1ASPNIDRAFT_202763-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202763-T1.exon1ASPNIDRAFT_202763-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_202763-T1.exon2ASPNIDRAFT_202763-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202763-T1.cdsASPNIDRAFT_202763-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_202763-T1ASPNIDRAFT_202763-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR016487
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductU4/U6-U5 snRNP complex subunit lsm6
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000020.1supercontigACJE01000020.1:1593409..1593840 +
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