You are here

Home

CBS51388_001035-T1, CBS51388_001035-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_001035-T1
Unique NameCBS51388_001035-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:3042055..3044418+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_001035-T1 ID=CBS51388_001035-T1|Name=CBS51388_001035-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2364bp|location=Sequence derived from alignment at An01:3042055..3044418+ (Aspergillus niger CBS 513.88)
ATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAACAGCTGCC
CGCTCCAGAGGCTAATGCGCCCAAGCGTGATCCGGAGAATGGCGATGCCG
CTGCAGACCACCAGGCCCAGGAGCCACCCTCGAAGAAAGCCAGACTCGAT
GATTCGGCGGATTCTAACGGACAGACGGCTGATGCGCCCGCCCCGCGTAT
GAAGGGCGTTGCTCCTATCAAGCCCGAGTATGTGATTGATCTAAATCTGT
TTGCGATGCGCCCGCTCTAACCGACTTCCTCTGCTAGGTTTATTATCGAC
CAACAACCCACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGC
TGCGGAAGCTGCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGA
AGAAAAAGAAGAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATCC
GAGGATGCGAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTC
TCCTGCCGAGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGC
GCACATACTTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGC
ATGTGTCCTGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATG
TCGTTTTGTCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGA
AAGAGTTGGTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGG
CTTGTTCCCTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGA
GGATAAGATTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGC
CGTATAGTGCTTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTC
CACAAACGGCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGA
GTCTAAGGATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGG
AGAACCGGGCTATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGC
CGACTGTACTTTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCCA
AGGCAATATGCCTTTCCGAAGACTTTGTGTCGAGCTTGGCGCACAATTTA
CCTATTCTGAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCG
GAGTGGGCCTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGAT
GCTGCCCGGGGCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATGA
AGTTTGGTGCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCT
ACAGAGGCGCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAA
CTGTGGCTGCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTC
TTCTGGAGCACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACT
GTTTCGGATCAGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGA
CAACAATCCGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCT
ACGAAACCAGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATC
ACTCTTCACGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTG
GGAATACATCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGA
CTGACGCGGTGACGGATACCATCCGGGAGCCTGACGCCCGTACGCAGCCA
AACGGCGGGAAGGTTTACTTCCTGGGTAACGGTGACTGCTACTCTCATGT
TGACTACGATAACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTTG
GTCGCGGTCCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGC
CAGTACCTTGACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTT
CTGTAAGTATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTA
CGACTAGACGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTA
CCTATCGGGTTGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCC
GGCTTTCAGAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACT
ACAAGGATTGGCTCAAGATCTCGTAAGTACCTTCTCCTGACCGGCTCACT
CTTTCGAACTCATTCTAACAGCCTTCTAGGGAGATGTTCCTCGGACCGGC
TCATAAGGACTTCAAGTTCGAGCCCAAGCACAAGTCCAACTCGTATGACG
AAGCGGAGGGTTAA
back to top

Coding sequence (CDS) from alignment at An01:3042055..3044418+

>CBS51388_001035-T1 ID=CBS51388_001035-T1|Name=CBS51388_001035-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=6741bp|location=Sequence derived from alignment at An01:3042055..3044418+ (Aspergillus niger CBS 513.88)
ATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAACAGCTGCC
CGCTCCAGAGGCTAATGCGCCCAAGCGTGATCCGGAGAATGGCGATGCCG
CTGCAGACCACCAGGCCCAGGAGCCACCCTCGAAGAAAGCCAGACTCGAT
GATTCGGCGGATTCTAACGGACAGACGGCTGATGCGCCCGCCCCGCGTAT
GAAGGGCGTTGCTCCTATCAAGCCCGAGTTTATTATCGACCAACAACCCA
CGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCT
GCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAA
GAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGA
AAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTCCTGCCGAG
TGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTT
GAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTG
TCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTC
GGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGT
TCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCT
TTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATT
GCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGC
TTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGC
ATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGAT
GCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGC
TATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACT
TTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATG
CCTTTCCGAAGACTTTGTGTCGAGCTTGGCGCACAATTTACCTATTCTGA
GATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCT
TAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGG
GCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGC
TCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGC
TGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGC
CCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCA
CCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATC
AGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCG
AACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAG
TCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACG
GCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATC
TCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGT
GACGGATACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAACGGCGGGA
AGGTTTACTTCCTGGGTAACGGTGACTGCTACTCTCATGTTGACTACGAT
AACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCC
TCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTG
ACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTAT
GGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACG
CTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGT
TGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGA
GGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTG
GCTCAAGATCTCGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGT
TCGAGCCCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAATG
GAGCCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAACAGCTGCCCGC
TCCAGAGGCTAATGCGCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTG
CAGACCACCAGGCCCAGGAGCCACCCTCGAAGAAAGCCAGACTCGATGAT
TCGGCGGATTCTAACGGACAGACGGCTGATGCGCCCGCCCCGCGTATGAA
GGGCGTTGCTCCTATCAAGCCCGAGTTTATTATCGACCAACAACCCACGA
GAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCA
CACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAA
GACTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAG
GATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTCCTGCCGAGTGC
ACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAA
GGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCT
GGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGT
TCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCT
TATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTG
CTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCC
TTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTG
GCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATC
GTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCA
GAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTAT
GTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTG
GACCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCT
TTCCGAAGACTTTGTGTCGAGCTTGGCGCACAATTTACCTATTCTGAGAT
GGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAA
TGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCA
GACATCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCA
GATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGG
CTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCG
ATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCC
GTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGA
TTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAAC
GCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCT
GCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCC
GTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCC
GAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGAC
GGATACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAACGGCGGGAAGG
TTTACTTCCTGGGTAACGGTGACTGCTACTCTCATGTTGACTACGATAAC
CACATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCT
GATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACA
AGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGT
CTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTT
CTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGC
TCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGC
CGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCT
CAAGATCTCGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCG
AGCCCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAATGGAG
CCGACAACCGCTCAGGAACAGCTGCCCGCTCCAGAACAGCTGCCCGCTCC
AGAGGCTAATGCGCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAG
ACCACCAGGCCCAGGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCG
GCGGATTCTAACGGACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGG
CGTTGCTCCTATCAAGCCCGAGTTTATTATCGACCAACAACCCACGAGAG
GCCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACAC
CACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGAC
TGGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGAT
TGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTCCTGCCGAGTGCACT
TTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAAGGA
GCATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGGG
ATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTCA
CACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTAT
TGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCTG
GAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTTG
GCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGCT
GGAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGTG
CTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGAA
TCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGTA
CGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGAC
CCGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTTC
CGAAGACTTTGTGTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGGC
CATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATGC
GAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGAC
ATCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGAT
TGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCTA
AAGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGATT
GACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGTC
GAAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGATTC
CTATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAACGCC
TTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGCT
TCATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGTA
GCAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCCGAA
TGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGGA
TACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAACGGCGGGAAGGTTT
ACTTCCTGGGTAACGGTGACTGCTACTCTCATGTTGACTACGATAACCAC
ATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGAT
CAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAGT
CTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCTG
GAGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCTT
GATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTCG
AGCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCGG
AATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCAA
GATCTCGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGC
CCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DUS3CBS51388_001035Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001035-T1.exon1CBS51388_001035-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_001035-T1.exon2CBS51388_001035-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_001035-T1.exon3CBS51388_001035-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001035-T1.cdsCBS51388_001035-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_001035-T1CBS51388_001035-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09261ZPW
DBxrefInterPro:IPR035587
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR018517
DBxrefInterPro:IPR001269
DBxrefInterPro:IPR013785
DBxrefPFAM:PF01207
ProducttRNA-dihydrouridine synthase 3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:3042055..3044418 +
Powered by Drupal