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CBS51388_005767-T1, CBS51388_005767-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_005767-T1
Unique NameCBS51388_005767-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An08:2502620..2503876+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_005767-T1 ID=CBS51388_005767-T1|Name=CBS51388_005767-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1257bp|location=Sequence derived from alignment at An08:2502620..2503876+ (Aspergillus niger CBS 513.88)
ATGGTAAGCACATAGAATCGTCCATTTCACGCCTCTTCTATTCAATTAGA
ATTGAGCTATCGACTACGCTGCGAATATGTCGTGTGACGATTTCCACGTC
CCGCTTCATCTCGCAACAGTCGAGAAGCGACAATAAAAAAAATTTCCGTT
GATTCGCTCTCTTCACAGTCCGTAAAACGATTGTGAAGGGGTGGATCAGC
GATGATTTTTGGCTGGAAGACACAAAGCTGTTCTTAAGGAAACTTGGGAC
AGTTTTGTGTCTCTCCCTAGAGTTCAAGGAAGATGCAGCAAGATGGTGGA
CAAGATTGCTGATCTTCTTTTCTCAATGATAGCCTGCCCAGAAGTCCGGA
AAGAAGACTGCCCCCCTCCCTTACCCCCAGGGTAAGGCTGGCGCTAAGAA
GGCTCCCAAGGTATGTGCTGACACCCTACATCAACTACTGAAACCACCAT
GAGAGAGATATATACTAACATGGTATGGATAGAACCCTCTCATCGAGAAG
CGCCCCCGCAACTTCGGCATTGGCCAGGACATCCAGCCCAAGCGCAACCT
CGGTCGCTTCGTCAAGTGGCCCGAGTATGTCCGTCTGCAGCGCCAGAAGA
AGATCTTGAACCTCCGTCTCAAGGTCCCTCCTTCCATTGCTCAGTTCCAG
AACACCCTGGACCGCAACACCGCTGCCCAGACCTTCAAGTTCCTCAACAA
GTACCGCCCCGAGACCAAGGTCGAGAAGAAGGAGCGTCTCCACGCCGAGG
CCACCGCCGTCGCTGAGGGCAAGAAGAAGGAGGATGTCTCCAAGAAGCCC
TACAACGTCAAGTACGGTCTCAACCACGTTGTCGGCCTCGTCGAGAACAA
GAAGGCTTCCCTCGTCCTGATTGCTCACGACGTTGACCCCATTGAGCTGG
TTGTCTTCCTTCCCGCTCTTTGCCGCAAGATGGGTGTCCCTTACGCTATT
GTTAAGGGCAAGGCTCGTCTCGGTACCGTTGTCCACAAGAAGGTATTTAT
CCCCTTATATATATCTCTCTACCCTCCAATAGCATTAAACTAATGAGTTG
GAATAGACCTCCGCTGTCCTCGCTCTCACCGAGGTCCGCTCCGAGGACAA
GGCTGAGTTCGCCAAGCTCCTCTCCGCCGTCAAGGAGGGCTACTCCGACA
AGTACGAGGAGTCCCGCCGCCACTGGGGTGGTGGTATCATGGGCGCCAAG
GCTGTTGCCCGCCAGGAGAAGAAGCGCAAGGCCGTTGAGGGTGCCATCCG
TGTCTAA
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Coding sequence (CDS) from alignment at An08:2502620..2503876+

>CBS51388_005767-T1 ID=CBS51388_005767-T1|Name=CBS51388_005767-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3168bp|location=Sequence derived from alignment at An08:2502620..2503876+ (Aspergillus niger CBS 513.88)
ATGCCTGCCCAGAAGTCCGGAAAGAAGACTGCCCCCCTCCCTTACCCCCA
GGGTAAGGCTGGCGCTAAGAAGGCTCCCAAGAACCCTCTCATCGAGAAGC
GCCCCCGCAACTTCGGCATTGGCCAGGACATCCAGCCCAAGCGCAACCTC
GGTCGCTTCGTCAAGTGGCCCGAGTATGTCCGTCTGCAGCGCCAGAAGAA
GATCTTGAACCTCCGTCTCAAGGTCCCTCCTTCCATTGCTCAGTTCCAGA
ACACCCTGGACCGCAACACCGCTGCCCAGACCTTCAAGTTCCTCAACAAG
TACCGCCCCGAGACCAAGGTCGAGAAGAAGGAGCGTCTCCACGCCGAGGC
CACCGCCGTCGCTGAGGGCAAGAAGAAGGAGGATGTCTCCAAGAAGCCCT
ACAACGTCAAGTACGGTCTCAACCACGTTGTCGGCCTCGTCGAGAACAAG
AAGGCTTCCCTCGTCCTGATTGCTCACGACGTTGACCCCATTGAGCTGGT
TGTCTTCCTTCCCGCTCTTTGCCGCAAGATGGGTGTCCCTTACGCTATTG
TTAAGGGCAAGGCTCGTCTCGGTACCGTTGTCCACAAGAAGACCTCCGCT
GTCCTCGCTCTCACCGAGGTCCGCTCCGAGGACAAGGCTGAGTTCGCCAA
GCTCCTCTCCGCCGTCAAGGAGGGCTACTCCGACAAGTACGAGGAGTCCC
GCCGCCACTGGGGTGGTGGTATCATGGGCGCCAAGGCTGTTGCCCGCCAG
GAGAAGAAGCGCAAGGCCGTTGAGGGTGCCATCCGTGTCTAAATGCCTGC
CCAGAAGTCCGGAAAGAAGACTGCCCCCCTCCCTTACCCCCAGGGTAAGG
CTGGCGCTAAGAAGGCTCCCAAGAACCCTCTCATCGAGAAGCGCCCCCGC
AACTTCGGCATTGGCCAGGACATCCAGCCCAAGCGCAACCTCGGTCGCTT
CGTCAAGTGGCCCGAGTATGTCCGTCTGCAGCGCCAGAAGAAGATCTTGA
ACCTCCGTCTCAAGGTCCCTCCTTCCATTGCTCAGTTCCAGAACACCCTG
GACCGCAACACCGCTGCCCAGACCTTCAAGTTCCTCAACAAGTACCGCCC
CGAGACCAAGGTCGAGAAGAAGGAGCGTCTCCACGCCGAGGCCACCGCCG
TCGCTGAGGGCAAGAAGAAGGAGGATGTCTCCAAGAAGCCCTACAACGTC
AAGTACGGTCTCAACCACGTTGTCGGCCTCGTCGAGAACAAGAAGGCTTC
CCTCGTCCTGATTGCTCACGACGTTGACCCCATTGAGCTGGTTGTCTTCC
TTCCCGCTCTTTGCCGCAAGATGGGTGTCCCTTACGCTATTGTTAAGGGC
AAGGCTCGTCTCGGTACCGTTGTCCACAAGAAGACCTCCGCTGTCCTCGC
TCTCACCGAGGTCCGCTCCGAGGACAAGGCTGAGTTCGCCAAGCTCCTCT
CCGCCGTCAAGGAGGGCTACTCCGACAAGTACGAGGAGTCCCGCCGCCAC
TGGGGTGGTGGTATCATGGGCGCCAAGGCTGTTGCCCGCCAGGAGAAGAA
GCGCAAGGCCGTTGAGGGTGCCATCCGTGTCTAAATGCCTGCCCAGAAGT
CCGGAAAGAAGACTGCCCCCCTCCCTTACCCCCAGGGTAAGGCTGGCGCT
AAGAAGGCTCCCAAGAACCCTCTCATCGAGAAGCGCCCCCGCAACTTCGG
CATTGGCCAGGACATCCAGCCCAAGCGCAACCTCGGTCGCTTCGTCAAGT
GGCCCGAGTATGTCCGTCTGCAGCGCCAGAAGAAGATCTTGAACCTCCGT
CTCAAGGTCCCTCCTTCCATTGCTCAGTTCCAGAACACCCTGGACCGCAA
CACCGCTGCCCAGACCTTCAAGTTCCTCAACAAGTACCGCCCCGAGACCA
AGGTCGAGAAGAAGGAGCGTCTCCACGCCGAGGCCACCGCCGTCGCTGAG
GGCAAGAAGAAGGAGGATGTCTCCAAGAAGCCCTACAACGTCAAGTACGG
TCTCAACCACGTTGTCGGCCTCGTCGAGAACAAGAAGGCTTCCCTCGTCC
TGATTGCTCACGACGTTGACCCCATTGAGCTGGTTGTCTTCCTTCCCGCT
CTTTGCCGCAAGATGGGTGTCCCTTACGCTATTGTTAAGGGCAAGGCTCG
TCTCGGTACCGTTGTCCACAAGAAGACCTCCGCTGTCCTCGCTCTCACCG
AGGTCCGCTCCGAGGACAAGGCTGAGTTCGCCAAGCTCCTCTCCGCCGTC
AAGGAGGGCTACTCCGACAAGTACGAGGAGTCCCGCCGCCACTGGGGTGG
TGGTATCATGGGCGCCAAGGCTGTTGCCCGCCAGGAGAAGAAGCGCAAGG
CCGTTGAGGGTGCCATCCGTGTCTAAATGCCTGCCCAGAAGTCCGGAAAG
AAGACTGCCCCCCTCCCTTACCCCCAGGGTAAGGCTGGCGCTAAGAAGGC
TCCCAAGAACCCTCTCATCGAGAAGCGCCCCCGCAACTTCGGCATTGGCC
AGGACATCCAGCCCAAGCGCAACCTCGGTCGCTTCGTCAAGTGGCCCGAG
TATGTCCGTCTGCAGCGCCAGAAGAAGATCTTGAACCTCCGTCTCAAGGT
CCCTCCTTCCATTGCTCAGTTCCAGAACACCCTGGACCGCAACACCGCTG
CCCAGACCTTCAAGTTCCTCAACAAGTACCGCCCCGAGACCAAGGTCGAG
AAGAAGGAGCGTCTCCACGCCGAGGCCACCGCCGTCGCTGAGGGCAAGAA
GAAGGAGGATGTCTCCAAGAAGCCCTACAACGTCAAGTACGGTCTCAACC
ACGTTGTCGGCCTCGTCGAGAACAAGAAGGCTTCCCTCGTCCTGATTGCT
CACGACGTTGACCCCATTGAGCTGGTTGTCTTCCTTCCCGCTCTTTGCCG
CAAGATGGGTGTCCCTTACGCTATTGTTAAGGGCAAGGCTCGTCTCGGTA
CCGTTGTCCACAAGAAGACCTCCGCTGTCCTCGCTCTCACCGAGGTCCGC
TCCGAGGACAAGGCTGAGTTCGCCAAGCTCCTCTCCGCCGTCAAGGAGGG
CTACTCCGACAAGTACGAGGAGTCCCGCCGCCACTGGGGTGGTGGTATCA
TGGGCGCCAAGGCTGTTGCCCGCCAGGAGAAGAAGCGCAAGGCCGTTGAG
GGTGCCATCCGTGTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:1990904ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL8CBS51388_005767Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005767-T1.exon1CBS51388_005767-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_005767-T1.exon2CBS51388_005767-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_005767-T1.exon3CBS51388_005767-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_005767-T1.exon4CBS51388_005767-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005767-T1.cdsCBS51388_005767-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005767-T1CBS51388_005767-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR029064
DBxrefInterPro:IPR004037
DBxrefInterPro:IPR004038
DBxrefInterPro:IPR038524
DBxrefInterPro:IPR001921
DBxrefInterPro:IPR018492
DBxrefPFAM:PF01248
Product60S ribosomal protein L8
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An08supercontigAn08:2502620..2503876 +
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