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Sequences
The following sequences are available for this feature:
mRNA from alignment at An09:472482..473317+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006040-T1 ID=CBS51388_006040-T1|Name=CBS51388_006040-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=836bp|location=Sequence derived from alignment at An09:472482..473317+ (Aspergillus niger CBS 513.88)
ATGAAGGTCTCCAGCCTCCCCATCTTAGCCTTCCTCCCTACCTCCCTCGC
CACAACCATCTACCTGGCGGGGGACTCCACCATGGCCACTGGCGGCGGTG
GTTCCGACACAGCAGGTACTTTCCCACCTACACCATCACACCTTCATCCA
CTAACAAACAATCAGGCTGGGGTGACTACGTCGCCCAATACCTGAGCAAC
TCAAGCGGCATCACCGTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACG
GTCCTACACGCGCGAAGGCCGGTTCGACGACATCGCCAGCACCCTTGAAG
CGGGCGACTACGTGATCATCGAGTTCGGTCACAACGACGGCGGCACGCTC
AGCTCGACCAGCGACAACGGCCGCACCGACTGTTCCGGCACGGGCTCCGA
AGTATGCTACTCGGAATACGACGGCGTCAATGAAACCATCCTCACCTTCC
CTGCATACCTCGAGAACGCCGCCAATACATTCAAAAAAATCGGCGCGACC
GTCATCATCTCTTCGCAGACGCCCGATAACCCCTGGGAAACAGGCACTTT
CGTGGATGACCCGCCGCGGTTCGTCGAATACGCGGAGATCGCGGCGGACA
CGGCGGACACGTCGTACGTGAATCATTTCGCCTATGTGGACCAGGTATAC
GAAGCGTTGGGAGCGGATACCGTGGATGCGTTTTATCCGATTGATCATAC
GCATACGAGTCCGGCGGGGGCGGATGTTGTGGCTAAGGCGTTTCTTAGGG
GTGTGGTCTGTGGGAAGTTGAGCTTGGCGGATGAGCTTGTGACGGATGAT
TTGGAGTTGGATGAGTATGAGTGTTTGGATGAGTAG back to topCoding sequence (CDS) from alignment at An09:472482..473317+ >CBS51388_006040-T1 ID=CBS51388_006040-T1|Name=CBS51388_006040-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1572bp|location=Sequence derived from alignment at An09:472482..473317+ (Aspergillus niger CBS 513.88)
ATGAAGGTCTCCAGCCTCCCCATCTTAGCCTTCCTCCCTACCTCCCTCGC
CACAACCATCTACCTGGCGGGGGACTCCACCATGGCCACTGGCGGCGGTG
GTTCCGACACAGCAGGCTGGGGTGACTACGTCGCCCAATACCTGAGCAAC
TCAAGCGGCATCACCGTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACG
GTCCTACACGCGCGAAGGCCGGTTCGACGACATCGCCAGCACCCTTGAAG
CGGGCGACTACGTGATCATCGAGTTCGGTCACAACGACGGCGGCACGCTC
AGCTCGACCAGCGACAACGGCCGCACCGACTGTTCCGGCACGGGCTCCGA
AGTATGCTACTCGGAATACGACGGCGTCAATGAAACCATCCTCACCTTCC
CTGCATACCTCGAGAACGCCGCCAATACATTCAAAAAAATCGGCGCGACC
GTCATCATCTCTTCGCAGACGCCCGATAACCCCTGGGAAACAGGCACTTT
CGTGGATGACCCGCCGCGGTTCGTCGAATACGCGGAGATCGCGGCGGACA
CGGCGGACACGTCGTACGTGAATCATTTCGCCTATGTGGACCAGGTATAC
GAAGCGTTGGGAGCGGATACCGTGGATGCGTTTTATCCGATTGATCATAC
GCATACGAGTCCGGCGGGGGCGGATGTTGTGGCTAAGGCGTTTCTTAGGG
GTGTGGTCTGTGGGAAGTTGAGCTTGGCGGATGAGCTTGTGACGGATGAT
TTGGAGTTGGATGAGTATGAGTGTTTGGATGAGTAGATGAAGGTCTCCAG
CCTCCCCATCTTAGCCTTCCTCCCTACCTCCCTCGCCACAACCATCTACC
TGGCGGGGGACTCCACCATGGCCACTGGCGGCGGTGGTTCCGACACAGCA
GGCTGGGGTGACTACGTCGCCCAATACCTGAGCAACTCAAGCGGCATCAC
CGTGTCCAACCAAGCCGTAGCCGGGCGCAGCGCACGGTCCTACACGCGCG
AAGGCCGGTTCGACGACATCGCCAGCACCCTTGAAGCGGGCGACTACGTG
ATCATCGAGTTCGGTCACAACGACGGCGGCACGCTCAGCTCGACCAGCGA
CAACGGCCGCACCGACTGTTCCGGCACGGGCTCCGAAGTATGCTACTCGG
AATACGACGGCGTCAATGAAACCATCCTCACCTTCCCTGCATACCTCGAG
AACGCCGCCAATACATTCAAAAAAATCGGCGCGACCGTCATCATCTCTTC
GCAGACGCCCGATAACCCCTGGGAAACAGGCACTTTCGTGGATGACCCGC
CGCGGTTCGTCGAATACGCGGAGATCGCGGCGGACACGGCGGACACGTCG
TACGTGAATCATTTCGCCTATGTGGACCAGGTATACGAAGCGTTGGGAGC
GGATACCGTGGATGCGTTTTATCCGATTGATCATACGCATACGAGTCCGG
CGGGGGCGGATGTTGTGGCTAAGGCGTTTCTTAGGGGTGTGGTCTGTGGG
AAGTTGAGCTTGGCGGATGAGCTTGTGACGGATGATTTGGAGTTGGATGA
GTATGAGTGTTTGGATGAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016787 | hydrolase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_9.5 |
| Note | SECRETED:SignalP(1-17) |
| Note | CAZy:CE12 |
| DBxref | InterPro:IPR037459 |
| DBxref | InterPro:IPR036514 |
| DBxref | InterPro:IPR013830 |
| DBxref | PFAM:PF13472 |
| Product | Rhamnogalacturonan acetylesterase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An09 | supercontig | An09:472482..473317 + |
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