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CBS51388_007509-T1, CBS51388_007509-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_007509-T1
Unique NameCBS51388_007509-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An12:372676..373702+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_007509-T1 ID=CBS51388_007509-T1|Name=CBS51388_007509-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1027bp|location=Sequence derived from alignment at An12:372676..373702+ (Aspergillus niger CBS 513.88)
ATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCG
TGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTG
CCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTC
GTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCT
GCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGG
ATGAGGTCATGAAGGTACGAACCGATCGCCCGATTACCGAATTGTCGACA
AGGAAGATCTACGATTGTGCGCGGGAAATAGGATTGAATGCGCGGGTGGA
ATTGATACGTGGATCGGAATTGCAGACATGATGGGATCAAAAAGGATATA
TCGAAAAAAAAATGGGAGGTGCTGACGGCTGGAAAATTTAGATCAAACCC
GTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGT
CGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTCCA
AGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCAGC
GTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCTCA
CTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGAG
TATGTCGCGACTCTTTTTCGATCCTCGATTTCGCTTTTCCGTCCGGCCAA
TATGCTAACCCGGTTATAGCTTATCCCCGCTCCCCGTGGTACCGGTCTCG
TTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGAC
GCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAA
GGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACC
TCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGAT
GTCCTGCGTCAGGGCAAGAAGTACTAG
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Coding sequence (CDS) from alignment at An12:372676..373702+

>CBS51388_007509-T1 ID=CBS51388_007509-T1|Name=CBS51388_007509-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2340bp|location=Sequence derived from alignment at An12:372676..373702+ (Aspergillus niger CBS 513.88)
ATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCG
TGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTG
CCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTC
GTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCT
GCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGG
ATGAGGTCATGAAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAG
CGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACAT
CGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTG
CCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGG
GGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAA
GTGTGGTTCCGTCTCCGTCAGACTTATCCCCGCTCCCCGTGGTACCGGTC
TCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAG
GACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCT
CAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCA
ACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGT
GATGTCCTGCGTCAGGGCAAGAAGTACTAGATGGCTGACGCTCCCCGTGG
ACGTGGAGGATTCGGCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTG
GCCGTGGTCGCCGTGGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAA
TGGCAGCCCGTCACCAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCAC
CAGCATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGA
TTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAGATCAAA
CCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGT
CGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCT
CCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTC
AGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCC
TCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCA
GACTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTC
AAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTC
CGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCG
TCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAG
CTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAA
GAAGTACTAGATGGCTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTC
GCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGT
CGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCT
CGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGAGCAGATCTACC
TGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCC
AAGCTGAAGGATGAGGTCATGAAGATCAAACCCGTCCAGAAGCAGACCCG
TGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCG
AGGGTCACATCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCT
ATCCGTGCTGCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAG
AGGTTACTGGGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGC
AGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGACTTATCCCCGCTCCCCGT
GGTACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGC
CGGTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCG
AGAACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTC
CTCACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGA
GGAGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS2CBS51388_007509Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007509-T1.exon1CBS51388_007509-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_007509-T1.exon2CBS51388_007509-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_007509-T1.exon3CBS51388_007509-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007509-T1.cdsCBS51388_007509-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_007509-T1CBS51388_007509-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264903
DBxrefInterPro:IPR020568
DBxrefInterPro:IPR018192
DBxrefInterPro:IPR013810
DBxrefInterPro:IPR014721
DBxrefInterPro:IPR005711
DBxrefInterPro:IPR005324
DBxrefPFAM:PF03719
DBxrefPFAM:PF00333
Product40S ribosomal protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An12supercontigAn12:372676..373702 +
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