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ATCC64974_86010-T1, ATCC64974_86010-T1 (mRNA) Aspergillus niger N402

Overview
NameATCC64974_86010-T1
Unique NameATCC64974_86010-T1
TypemRNA
OrganismAspergillus niger N402
Sequences
The following sequences are available for this feature:

mRNA from alignment at OGUI01000015.1:298095..298829+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC64974_86010-T1 ID=ATCC64974_86010-T1|Name=ATCC64974_86010-T1|organism=Aspergillus niger N402|type=mRNA|length=735bp|location=Sequence derived from alignment at OGUI01000015.1:298095..298829+ (Aspergillus niger N402)
ATGCGTCAACTCACCGAAGGTAGGTACAACCATCTCCGTCTGTTGTGATT
CTCGCGCATGGATTCTTATTTCGCTTCTGTTTAGAGGAAACCCGGACTTT
GTTCGAAAAGTTGGCCAACTACACTGGAAGGAGTCTTAACAACCTGATCG
CACCTCCTTCTGGCTCCGAAGATGCCAACGACCGCTATGTTTTCCGTCTT
CACGGCAGCAGAGTATACTACCTGAGACTTTCTCTGGCGAACCTCGCAAC
CAGCATTCCTCGCGCCAATCTCCTCACCCTCGGAACCTGCATCGGAAAGT
TCACCAAGACCGGAAAGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTC
GCTCCTCATGCGCGCTACAAGGTGTGGATCAAGCAGAACGGTGTGATGCC
GTTCCTCTATGGCTCCAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCG
AGGACTGCCCGGAGAATGCCGGTGTAATCGTTATGGATATGAATGATACG
CCATTGGTAAGAAGACCTCGGCTGGATTGAGATAATCAGAGGCTGATATA
CGTTAGGGATTCGGTGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACT
GGAGCCCACAGCCAACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACC
TGAGAGAGGTAGGTTGACCAAATGTCACATCCACGGTATCAATTTGCTGA
CATACCCCTAGGAAGATACTCTGTTTACGACCTAA
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Coding sequence (CDS) from alignment at OGUI01000015.1:298095..298829+

>ATCC64974_86010-T1 ID=ATCC64974_86010-T1|Name=ATCC64974_86010-T1|organism=Aspergillus niger N402|type=CDS|length=2268bp|location=Sequence derived from alignment at OGUI01000015.1:298095..298829+ (Aspergillus niger N402)
ATGCGTCAACTCACCGAAGAGGAAACCCGGACTTTGTTCGAAAAGTTGGC
CAACTACACTGGAAGGAGTCTTAACAACCTGATCGCACCTCCTTCTGGCT
CCGAAGATGCCAACGACCGCTATGTTTTCCGTCTTCACGGCAGCAGAGTA
TACTACCTGAGACTTTCTCTGGCGAACCTCGCAACCAGCATTCCTCGCGC
CAATCTCCTCACCCTCGGAACCTGCATCGGAAAGTTCACCAAGACCGGAA
AGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTCGCTCCTCATGCGCGC
TACAAGGTGTGGATCAAGCAGAACGGTGTGATGCCGTTCCTCTATGGCTC
CAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCGAGGACTGCCCGGAGA
ATGCCGGTGTAATCGTTATGGATATGAATGATACGCCATTGGGATTCGGT
GTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACTGGAGCCCACAGCCAA
CGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACCTGAGAGAGGAAGATA
CTCTGTTTACGACCTAAATGCGTCAACTCACCGAAGAGGAAACCCGGACT
TTGTTCGAAAAGTTGGCCAACTACACTGGAAGGAGTCTTAACAACCTGAT
CGCACCTCCTTCTGGCTCCGAAGATGCCAACGACCGCTATGTTTTCCGTC
TTCACGGCAGCAGAGTATACTACCTGAGACTTTCTCTGGCGAACCTCGCA
ACCAGCATTCCTCGCGCCAATCTCCTCACCCTCGGAACCTGCATCGGAAA
GTTCACCAAGACCGGAAAGTTCAGAATCCAGCTTACGGCTTTGGATGTCC
TCGCTCCTCATGCGCGCTACAAGGTGTGGATCAAGCAGAACGGTGTGATG
CCGTTCCTCTATGGCTCCAACGTGGCCAAGGCCCACGTCGGAAGATTCAG
CGAGGACTGCCCGGAGAATGCCGGTGTAATCGTTATGGATATGAATGATA
CGCCATTGGGATTCGGTGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGA
CTGGAGCCCACAGCCAACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTA
CCTGAGAGAGGAAGATACTCTGTTTACGACCTAAATGCGTCAACTCACCG
AAGAGGAAACCCGGACTTTGTTCGAAAAGTTGGCCAACTACACTGGAAGG
AGTCTTAACAACCTGATCGCACCTCCTTCTGGCTCCGAAGATGCCAACGA
CCGCTATGTTTTCCGTCTTCACGGCAGCAGAGTATACTACCTGAGACTTT
CTCTGGCGAACCTCGCAACCAGCATTCCTCGCGCCAATCTCCTCACCCTC
GGAACCTGCATCGGAAAGTTCACCAAGACCGGAAAGTTCAGAATCCAGCT
TACGGCTTTGGATGTCCTCGCTCCTCATGCGCGCTACAAGGTGTGGATCA
AGCAGAACGGTGTGATGCCGTTCCTCTATGGCTCCAACGTGGCCAAGGCC
CACGTCGGAAGATTCAGCGAGGACTGCCCGGAGAATGCCGGTGTAATCGT
TATGGATATGAATGATACGCCATTGGGATTCGGTGTGACTGCCCGGTCGA
GTGCTGAAACCCGGAGACTGGAGCCCACAGCCAACGTGGTGTTCCGTCAG
GCAGATATTGGAGAGTACCTGAGAGAGGAAGATACTCTGTTTACGACCTA
AATGCGTCAACTCACCGAAGAGGAAACCCGGACTTTGTTCGAAAAGTTGG
CCAACTACACTGGAAGGAGTCTTAACAACCTGATCGCACCTCCTTCTGGC
TCCGAAGATGCCAACGACCGCTATGTTTTCCGTCTTCACGGCAGCAGAGT
ATACTACCTGAGACTTTCTCTGGCGAACCTCGCAACCAGCATTCCTCGCG
CCAATCTCCTCACCCTCGGAACCTGCATCGGAAAGTTCACCAAGACCGGA
AAGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTCGCTCCTCATGCGCG
CTACAAGGTGTGGATCAAGCAGAACGGTGTGATGCCGTTCCTCTATGGCT
CCAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCGAGGACTGCCCGGAG
AATGCCGGTGTAATCGTTATGGATATGAATGATACGCCATTGGGATTCGG
TGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACTGGAGCCCACAGCCA
ACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACCTGAGAGAGGAAGAT
ACTCTGTTTACGACCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NIP7ATCC64974_86010Aspergillus niger N402gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_86010-T1.exon1ATCC64974_86010-T1.exon1Aspergillus niger N402exon
ATCC64974_86010-T1.exon2ATCC64974_86010-T1.exon2Aspergillus niger N402exon
ATCC64974_86010-T1.exon3ATCC64974_86010-T1.exon3Aspergillus niger N402exon
ATCC64974_86010-T1.exon4ATCC64974_86010-T1.exon4Aspergillus niger N402exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_86010-T1.cdsATCC64974_86010-T1.cdsAspergillus niger N402CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC64974_86010-T1ATCC64974_86010-T1-proteinAspergillus niger N402polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264PD5
DBxrefInterPro:IPR015947
DBxrefInterPro:IPR040598
DBxrefInterPro:IPR016686
DBxrefInterPro:IPR005155
DBxrefInterPro:IPR036974
DBxrefInterPro:IPR002478
DBxrefPFAM:PF17833
DBxrefPFAM:PF03657
Productribosome biosynthesis protein nip7
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger N402 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
OGUI01000015.1supercontigOGUI01000015.1:298095..298829 +
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