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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000007.1:389276..389973- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_33425-T1 ID=CAN33_33425-T1|Name=CAN33_33425-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=698bp|location=Sequence derived from alignment at NKJJ01000007.1:389276..389973- (Aspergillus niger FDAARGOS_311)
ATGTCTGCCAGCCCATCCCCCTCTGCCGGTGGCGATAGCAAGCCCACCGA
TCAAATTCACTTCCGATTCTGTCGTGAATGGTAAGTTTTGATCTCTACAC
TTTGGTCGGACCTTCTGCTAACGTCTACAGTTCCAACTTGCTCTACCCGA
AGGAAGACCGCATCAACAACCGGTTGATGTTCACCTGCCGAACCTGCCAT
GTCGGCGAGCCCGCCACCTCCTACTGCGTCTATCAAAACAAACTCAACAC
TCAAGTCGGAGATACCGCCGGTGTGACCCAGGATGTGGGATCTGATCCTA
CGGTTTGTCTCCCGGGTTTCTGTGATCATTGTGGGGAAGAGATTACCTGC
TTCGTCTGTGACATATCCTCCGAGGACTCCTGGTCCGAAGAGGATTATGA
TGGCTTTTCGTCGTCATGAGGTCCTGCGAGCGCCGCGCTCGCGTCATGGA
TACATTCCAAGTTGTCTTGAAATTTCCGTGGCTAACCCACTCTTTCCCTA
GCTTCCTCGTTCCAACAAGCTCTGCCCGAGCTGCGGCGAAGCCGAAGCAG
TCTTCTTCCAGTCGCAACAGCGTTCCGCTGAAACGGGAATGGTAAGCCTT
CATGCCGGTTTACACCGCATCCATGAAGGGATCGGCTGACGCTTACTTTC
CAGAAACTTTACTACGTCTGTTGCGCGTGCGGCAATGTTTTCGTCTAA back to topCoding sequence (CDS) from alignment at NKJJ01000007.1:389276..389973- >CAN33_33425-T1 ID=CAN33_33425-T1|Name=CAN33_33425-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1548bp|location=Sequence derived from alignment at NKJJ01000007.1:389276..389973- (Aspergillus niger FDAARGOS_311)
AAACTTTACTACGTCTGTTGCGCGTGCGGCAATGTTTTCGTCTAACTTCC
TCGTTCCAACAAGCTCTGCCCGAGCTGCGGCGAAGCCGAAGCAGTCTTCT
TCCAGTCGCAACAGCGTTCCGCTGAAACGGGAATGTTCCAACTTGCTCTA
CCCGAAGGAAGACCGCATCAACAACCGGTTGATGTTCACCTGCCGAACCT
GCCATGTCGGCGAGCCCGCCACCTCCTACTGCGTCTATCAAAACAAACTC
AACACTCAAGTCGGAGATACCGCCGGTGTGACCCAGGATGTGGGATCTGA
TCCTACGATGTCTGCCAGCCCATCCCCCTCTGCCGGTGGCGATAGCAAGC
CCACCGATCAAATTCACTTCCGATTCTGTCGTGAATGAAACTTTACTACG
TCTGTTGCGCGTGCGGCAATGTTTTCGTCTAACTTCCTCGTTCCAACAAG
CTCTGCCCGAGCTGCGGCGAAGCCGAAGCAGTCTTCTTCCAGTCGCAACA
GCGTTCCGCTGAAACGGGAATGTTCCAACTTGCTCTACCCGAAGGAAGAC
CGCATCAACAACCGGTTGATGTTCACCTGCCGAACCTGCCATGTCGGCGA
GCCCGCCACCTCCTACTGCGTCTATCAAAACAAACTCAACACTCAAGTCG
GAGATACCGCCGGTGTGACCCAGGATGTGGGATCTGATCCTACGATGTCT
GCCAGCCCATCCCCCTCTGCCGGTGGCGATAGCAAGCCCACCGATCAAAT
TCACTTCCGATTCTGTCGTGAATGAAACTTTACTACGTCTGTTGCGCGTG
CGGCAATGTTTTCGTCTAACTTCCTCGTTCCAACAAGCTCTGCCCGAGCT
GCGGCGAAGCCGAAGCAGTCTTCTTCCAGTCGCAACAGCGTTCCGCTGAA
ACGGGAATGTTCCAACTTGCTCTACCCGAAGGAAGACCGCATCAACAACC
GGTTGATGTTCACCTGCCGAACCTGCCATGTCGGCGAGCCCGCCACCTCC
TACTGCGTCTATCAAAACAAACTCAACACTCAAGTCGGAGATACCGCCGG
TGTGACCCAGGATGTGGGATCTGATCCTACGATGTCTGCCAGCCCATCCC
CCTCTGCCGGTGGCGATAGCAAGCCCACCGATCAAATTCACTTCCGATTC
TGTCGTGAATGAAACTTTACTACGTCTGTTGCGCGTGCGGCAATGTTTTC
GTCTAACTTCCTCGTTCCAACAAGCTCTGCCCGAGCTGCGGCGAAGCCGA
AGCAGTCTTCTTCCAGTCGCAACAGCGTTCCGCTGAAACGGGAATGTTCC
AACTTGCTCTACCCGAAGGAAGACCGCATCAACAACCGGTTGATGTTCAC
CTGCCGAACCTGCCATGTCGGCGAGCCCGCCACCTCCTACTGCGTCTATC
AAAACAAACTCAACACTCAAGTCGGAGATACCGCCGGTGTGACCCAGGAT
GTGGGATCTGATCCTACGATGTCTGCCAGCCCATCCCCCTCTGCCGGTGG
CGATAGCAAGCCCACCGATCAAATTCACTTCCGATTCTGTCGTGAATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006379 | mRNA cleavage |
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092654O3 |
| DBxref | InterPro:IPR034012 |
| DBxref | InterPro:IPR012164 |
| DBxref | InterPro:IPR001529 |
| DBxref | InterPro:IPR001222 |
| DBxref | PFAM:PF01096 |
| DBxref | PFAM:PF02150 |
| Product | Transcription factor S-II (TFIIS) family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000007.1 | supercontig | NKJJ01000007.1:389276..389973 - |
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