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CAN33_12620-T1, CAN33_12620-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_12620-T1
Unique NameCAN33_12620-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000010.1:286002..287219-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_12620-T1 ID=CAN33_12620-T1|Name=CAN33_12620-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1218bp|location=Sequence derived from alignment at NKJJ01000010.1:286002..287219- (Aspergillus niger FDAARGOS_311)
ATGGCGTCAACGTCTCAACCCCCTCTCCGGTTCACTTCCCACAAGAACTT
TGTGTACCGTCTCGTCTTCGCTACGTTGACCGGCCGCACGATTCAGATCT
CCCAGATTCGTCCTTCGTCGCCTACGAATCCCGGTCTCGCTCCTCATGAA
ATCTCGTTCCTTCGTCTTCTGGAGTCCATTACCAATGGCTCCCAGATGGA
GATCTCGTACACCGGTACTATCCTTGTTTATAAGCCCGGCCTCATTACAG
GCAGTTCGCCAGGTGTGGCCACGAGCAGCGGAGGCGTCATCCGGCACGAG
CTCCCAGCAGGGTGCAATCGTGGCGTGAGTTATTATCTGCTGCCGCTCTG
CCTTTTGGCACCCTTTTCCAAGGCTCCCATCAAGGTCCTCTTTACTGGTC
CAGGTGTGATTACCTCGTCCACCCCGACTGGTGACATGTCCGTGGACAGT
GTGCGAACCGCCATTCTCCCTCTCTACAACCAATTTGGAATCTTTAACAA
CATCGAGCTGCGTATCCTACGGCGATCGAACCCTGGACCCAATGGCAGAG
GCGGTGGTGGAGAAGTCCAGCTAGTATTTGGCCACCAGCTCCGGCTGCCG
AAGACCCTGCACCTCATGAACGCCGGTCGCATCAAGAAGGTCCGCGGTGT
GGCCTACTCTGTCGGTGTTTCCGCATCCAATAACGCACGAATGATCGAAA
CCGCCCGTGGTGTTTTGAACCCACTCGTCCCTGACACCTATGTCTTCTCT
GATGTGTCGTCGGCGCCGCTCGTACCTGCTCCCGAGAAGAGCAACCCTTC
CGCGAAAAAGAAGATTGGCCTTGGATTTGGACTCTCGTTGGTTGCAGAGT
CATCTACTGGCTGCCTGTTCTCCGCCGATGTGGCGTCGCCTCCCGCAGGC
GGCGAGGCGCCTGAAGACATTGGGAAGCGATGTGCTTACCAGCTACTTGA
GGCCGTTTCGAAGGGAGGTTGCGTTGCCCCTGCAGCTGTTCCGACCATGC
TGGGTCTGATGACGATGGGATCGGAGGATGTTGGACGAATCCAGGTTGGT
CGGGAGGTGATCGCCGAGGAGAGCACCATCCAGCTGGCCAGGGACCTGAC
CAAGTTCGGTGCTCCGGGTTGGGGTCTGAGAGACGCGAGTGGTGAGAATG
AGAATGGGGATGTGATCATCAGCGTGGTTGGCCGCGGCATTGGCAACGTT
GGCCGTAAGGTTGCTTGA
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Coding sequence (CDS) from alignment at NKJJ01000010.1:286002..287219-

>CAN33_12620-T1 ID=CAN33_12620-T1|Name=CAN33_12620-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1218bp|location=Sequence derived from alignment at NKJJ01000010.1:286002..287219- (Aspergillus niger FDAARGOS_311)
ATGGCGTCAACGTCTCAACCCCCTCTCCGGTTCACTTCCCACAAGAACTT
TGTGTACCGTCTCGTCTTCGCTACGTTGACCGGCCGCACGATTCAGATCT
CCCAGATTCGTCCTTCGTCGCCTACGAATCCCGGTCTCGCTCCTCATGAA
ATCTCGTTCCTTCGTCTTCTGGAGTCCATTACCAATGGCTCCCAGATGGA
GATCTCGTACACCGGTACTATCCTTGTTTATAAGCCCGGCCTCATTACAG
GCAGTTCGCCAGGTGTGGCCACGAGCAGCGGAGGCGTCATCCGGCACGAG
CTCCCAGCAGGGTGCAATCGTGGCGTGAGTTATTATCTGCTGCCGCTCTG
CCTTTTGGCACCCTTTTCCAAGGCTCCCATCAAGGTCCTCTTTACTGGTC
CAGGTGTGATTACCTCGTCCACCCCGACTGGTGACATGTCCGTGGACAGT
GTGCGAACCGCCATTCTCCCTCTCTACAACCAATTTGGAATCTTTAACAA
CATCGAGCTGCGTATCCTACGGCGATCGAACCCTGGACCCAATGGCAGAG
GCGGTGGTGGAGAAGTCCAGCTAGTATTTGGCCACCAGCTCCGGCTGCCG
AAGACCCTGCACCTCATGAACGCCGGTCGCATCAAGAAGGTCCGCGGTGT
GGCCTACTCTGTCGGTGTTTCCGCATCCAATAACGCACGAATGATCGAAA
CCGCCCGTGGTGTTTTGAACCCACTCGTCCCTGACACCTATGTCTTCTCT
GATGTGTCGTCGGCGCCGCTCGTACCTGCTCCCGAGAAGAGCAACCCTTC
CGCGAAAAAGAAGATTGGCCTTGGATTTGGACTCTCGTTGGTTGCAGAGT
CATCTACTGGCTGCCTGTTCTCCGCCGATGTGGCGTCGCCTCCCGCAGGC
GGCGAGGCGCCTGAAGACATTGGGAAGCGATGTGCTTACCAGCTACTTGA
GGCCGTTTCGAAGGGAGGTTGCGTTGCCCCTGCAGCTGTTCCGACCATGC
TGGGTCTGATGACGATGGGATCGGAGGATGTTGGACGAATCCAGGTTGGT
CGGGAGGTGATCGCCGAGGAGAGCACCATCCAGCTGGCCAGGGACCTGAC
CAAGTTCGGTGCTCCGGGTTGGGGTCTGAGAGACGCGAGTGGTGAGAATG
AGAATGGGGATGTGATCATCAGCGTGGTTGGCCGCGGCATTGGCAACGTT
GGCCGTAAGGTTGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_12620CAN33_12620Aspergillus niger FDAARGOS_311gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12620-T1.cdsCAN33_12620-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12620-T1.exon1CAN33_12620-T1.exon1Aspergillus niger FDAARGOS_311exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_12620-T1CAN33_12620-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926307V
DBxrefInterPro:IPR013792
DBxrefInterPro:IPR013791
DBxrefInterPro:IPR037136
DBxrefInterPro:IPR036553
DBxrefInterPro:IPR023797
DBxrefInterPro:IPR016443
DBxrefPFAM:PF05189
DBxrefPFAM:PF01137
Product18S rRNA biogenesis protein RCL1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000010.1supercontigNKJJ01000010.1:286002..287219 -
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