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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000017.1:499309..500959- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_36895-T1 ID=CAN33_36895-T1|Name=CAN33_36895-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1651bp|location=Sequence derived from alignment at NKJJ01000017.1:499309..500959- (Aspergillus niger FDAARGOS_311)
ATGGCAGATGCGAAGCGGTCGTTCCAGGAATTCAACCTCTCTCGTCCCAT
CCTTCGTGGTCTCGCCGGAGTCAACTTCTCGAACCCTACACCCATTCAGC
GCAAGACGATCCCCGTGGCTCTCCTGGGCAAGGATATTGTCGGTAGTGCC
GTTACTGGTTCCGGAAAGACTGCCGCCTTCGTTGTCCCGATTCTCGAACG
TCTGCTGTTCCGGCCGCGCAAGGTCCCGACGAGTCGTGTTGCCATTCTCA
TGCCCACCCGTGAATTGGCGGTGCAGTGCTACAATGTCGCTACAAAGCTG
GCCACATACACGGACATCACCTTCTGTCAGCTGGTCGGTGGTTTCAGTCT
TCGCGAGCAGGAGAACATCTTGAAGAAGCGTCCCGATGTGATCATCGCCA
CCCCCGGTCGTTTCATTGATCACATGCGCAACTCGGCCAGCTTCACCGTT
GATACTCTGGAAATCCTGGTTCTGGATGAAGCCGATCGCATGCTCGAGGA
CGGTTTCGCCGACGAGTTGAACGAGATTCTCACTACGATCCCCAAGTCGC
GCCAGACCATGCTTTTCTCGGCTACGATGACGGACACTGTCGACAAGCTC
ATTCGCGTCGGTCTCAACCGCCCCGTGCGCTTGATGGTCGACGCCAAGAA
GAACACGGCCGTGACACTGGTGCAGGAATTCGTGCGTCTGCGCCCCGGAC
GTGAGGACAAGCGACTAGGCTACCTTCTCTACCTCTGCAAAGAGATCTAC
ACCGGTCGGGTGATTGTCTTCTTCCGACAGAAGAAGGAGGCGCACCGGGT
GCGTATCATCTTCGGACTGCTGGGCTTGAAGGCTGCCGAGCTCCACGGTA
GCATGAGCCAAGAACAGGTATGTTATTTTACATCGACTTTCATTTTCTTC
AATACGATCGATGATACTAATCGTGGGGTTTTCCAAACTACAGCGTATCA
AGAGTGTCGAGAATTTCCGTGAGGGCAAGGCGGCGTTCCTGCTGGCTACG
GATCTGGCGTCGCGTGGTCTGGATATCAAGGGCGTTGAGACGGTCATCAA
CTACGAAGCGCCGCAGAGCCATGAGATCTACCTGCATCGTGTTGGTCGTA
CTGCGCGTGCGGGCCGCTCCGGTCGGGCCTGCACCATTGCCGCCGAGCCT
GACCGCAAGGTGGTCAAGGCGGCGGTGAAGGCGGGCAAGTCGCAAGGAGC
CAAGATTGCCAGCCGTGTGATTGAACCGGCGGTGGCGGATTCCTGGGCGG
CCAAGGCGGAGGAGTTGGCGGACGAGGTGGAAGAGGTGTTGTCGGAGGAG
AAGCTCGAGAAGCAGCTGGCACAGGCGGAGATGCAAGTGACCAAGGGAGA
GAACCTGATCAAGCACGAGGCGGAGATCAAGTCGCGGCCGAAGCGTACTT
GGTTCGAGACGGAGCGCGACAAGAAGGCGGCGCGGAAGCTGGGCGCGGCG
GAGCTCAACGGGCCCGATGCCGGCATGTCCAAGAAGGAGAAGCAGAAGCT
CAGCAACAAGGACAAGAAGCGTCTGGATGATTCCCGTCAGCGCCAGGAAG
CGGGTGCTGGTTGGAAGAAGGGCCGGGCAACACGGGAGAGCATGAAGAAT
GGGCAATTGCCCAAAGCTAAGAAGGACAACAAGAAGAAGGGCAAGAAATG
A back to topCoding sequence (CDS) from alignment at NKJJ01000017.1:499309..500959- >CAN33_36895-T1 ID=CAN33_36895-T1|Name=CAN33_36895-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4491bp|location=Sequence derived from alignment at NKJJ01000017.1:499309..500959- (Aspergillus niger FDAARGOS_311)
AAGCAGCTGGCACAGGCGGAGATGCAAGTGACCAAGGGAGAGAACCTGAT
CAAGCACGAGGCGGAGATCAAGTCGCGGCCGAAGCGTACTTGGTTCGAGA
CGGAGCGCGACAAGAAGGCGGCGCGGAAGCTGGGCGCGGCGGAGCTCAAC
GGGCCCGATGCCGGCATGTCCAAGAAGGAGAAGCAGAAGCTCAGCAACAA
GGACAAGAAGCGTCTGGATGATTCCCGTCAGCGCCAGGAAGCGGGTGCTG
GTTGGAAGAAGGGCCGGGCAACACGGGAGAGCATGAAGAATGGGCAATTG
CCCAAAGCTAAGAAGGACAACAAGAAGAAGGGCAAGAAATGACGTATCAA
GAGTGTCGAGAATTTCCGTGAGGGCAAGGCGGCGTTCCTGCTGGCTACGG
ATCTGGCGTCGCGTGGTCTGGATATCAAGGGCGTTGAGACGGTCATCAAC
TACGAAGCGCCGCAGAGCCATGAGATCTACCTGCATCGTGTTGGTCGTAC
TGCGCGTGCGGGCCGCTCCGGTCGGGCCTGCACCATTGCCGCCGAGCCTG
ACCGCAAGGTGGTCAAGGCGGCGGTGAAGGCGGGCAAGTCGCAAGGAGCC
AAGATTGCCAGCCGTGTGATTGAACCGGCGATGGCAGATGCGAAGCGGTC
GTTCCAGGAATTCAACCTCTCTCGTCCCATCCTTCGTGGTCTCGCCGGAG
TCAACTTCTCGAACCCTACACCCATTCAGCGCAAGACGATCCCCGTGGCT
CTCCTGGGCAAGGATATTGTCGGTAGTGCCGTTACTGGTTCCGGAAAGAC
TGCCGCCTTCGTTGTCCCGATTCTCGAACGTCTGCTGTTCCGGCCGCGCA
AGGTCCCGACGAGTCGTGTTGCCATTCTCATGCCCACCCGTGAATTGGCG
GTGCAGTGCTACAATGTCGCTACAAAGCTGGCCACATACACGGACATCAC
CTTCTGTCAGCTGGTCGGTGGTTTCAGTCTTCGCGAGCAGGAGAACATCT
TGAAGAAGCGTCCCGATGTGATCATCGCCACCCCCGGTCGTTTCATTGAT
CACATGCGCAACTCGGCCAGCTTCACCGTTGATACTCTGGAAATCCTGGT
TCTGGATGAAGCCGATCGCATGCTCGAGGACGGTTTCGCCGACGAGTTGA
ACGAGATTCTCACTACGATCCCCAAGTCGCGCCAGACCATGCTTTTCTCG
GCTACGATGACGGACACTGTCGACAAGCTCATTCGCGTCGGTCTCAACCG
CCCCGTGCGCTTGATGGTCGACGCCAAGAAGAACACGGCCGTGACACTGG
TGCAGGAATTCGTGCGTCTGCGCCCCGGACGTGAGGACAAGCGACTAGGC
TACCTTCTCTACCTCTGCAAAGAGATCTACACCGGTCGGGTGATTGTCTT
CTTCCGACAGAAGAAGGAGGCGCACCGGGTGCGTATCATCTTCGGACTGC
TGGGCTTGAAGGCTGCCGAGCTCCACGGTAGCATGAGCCAAGAACAGAAG
CAGCTGGCACAGGCGGAGATGCAAGTGACCAAGGGAGAGAACCTGATCAA
GCACGAGGCGGAGATCAAGTCGCGGCCGAAGCGTACTTGGTTCGAGACGG
AGCGCGACAAGAAGGCGGCGCGGAAGCTGGGCGCGGCGGAGCTCAACGGG
CCCGATGCCGGCATGTCCAAGAAGGAGAAGCAGAAGCTCAGCAACAAGGA
CAAGAAGCGTCTGGATGATTCCCGTCAGCGCCAGGAAGCGGGTGCTGGTT
GGAAGAAGGGCCGGGCAACACGGGAGAGCATGAAGAATGGGCAATTGCCC
AAAGCTAAGAAGGACAACAAGAAGAAGGGCAAGAAATGACGTATCAAGAG
TGTCGAGAATTTCCGTGAGGGCAAGGCGGCGTTCCTGCTGGCTACGGATC
TGGCGTCGCGTGGTCTGGATATCAAGGGCGTTGAGACGGTCATCAACTAC
GAAGCGCCGCAGAGCCATGAGATCTACCTGCATCGTGTTGGTCGTACTGC
GCGTGCGGGCCGCTCCGGTCGGGCCTGCACCATTGCCGCCGAGCCTGACC
GCAAGGTGGTCAAGGCGGCGGTGAAGGCGGGCAAGTCGCAAGGAGCCAAG
ATTGCCAGCCGTGTGATTGAACCGGCGATGGCAGATGCGAAGCGGTCGTT
CCAGGAATTCAACCTCTCTCGTCCCATCCTTCGTGGTCTCGCCGGAGTCA
ACTTCTCGAACCCTACACCCATTCAGCGCAAGACGATCCCCGTGGCTCTC
CTGGGCAAGGATATTGTCGGTAGTGCCGTTACTGGTTCCGGAAAGACTGC
CGCCTTCGTTGTCCCGATTCTCGAACGTCTGCTGTTCCGGCCGCGCAAGG
TCCCGACGAGTCGTGTTGCCATTCTCATGCCCACCCGTGAATTGGCGGTG
CAGTGCTACAATGTCGCTACAAAGCTGGCCACATACACGGACATCACCTT
CTGTCAGCTGGTCGGTGGTTTCAGTCTTCGCGAGCAGGAGAACATCTTGA
AGAAGCGTCCCGATGTGATCATCGCCACCCCCGGTCGTTTCATTGATCAC
ATGCGCAACTCGGCCAGCTTCACCGTTGATACTCTGGAAATCCTGGTTCT
GGATGAAGCCGATCGCATGCTCGAGGACGGTTTCGCCGACGAGTTGAACG
AGATTCTCACTACGATCCCCAAGTCGCGCCAGACCATGCTTTTCTCGGCT
ACGATGACGGACACTGTCGACAAGCTCATTCGCGTCGGTCTCAACCGCCC
CGTGCGCTTGATGGTCGACGCCAAGAAGAACACGGCCGTGACACTGGTGC
AGGAATTCGTGCGTCTGCGCCCCGGACGTGAGGACAAGCGACTAGGCTAC
CTTCTCTACCTCTGCAAAGAGATCTACACCGGTCGGGTGATTGTCTTCTT
CCGACAGAAGAAGGAGGCGCACCGGGTGCGTATCATCTTCGGACTGCTGG
GCTTGAAGGCTGCCGAGCTCCACGGTAGCATGAGCCAAGAACAGAAGCAG
CTGGCACAGGCGGAGATGCAAGTGACCAAGGGAGAGAACCTGATCAAGCA
CGAGGCGGAGATCAAGTCGCGGCCGAAGCGTACTTGGTTCGAGACGGAGC
GCGACAAGAAGGCGGCGCGGAAGCTGGGCGCGGCGGAGCTCAACGGGCCC
GATGCCGGCATGTCCAAGAAGGAGAAGCAGAAGCTCAGCAACAAGGACAA
GAAGCGTCTGGATGATTCCCGTCAGCGCCAGGAAGCGGGTGCTGGTTGGA
AGAAGGGCCGGGCAACACGGGAGAGCATGAAGAATGGGCAATTGCCCAAA
GCTAAGAAGGACAACAAGAAGAAGGGCAAGAAATGACGTATCAAGAGTGT
CGAGAATTTCCGTGAGGGCAAGGCGGCGTTCCTGCTGGCTACGGATCTGG
CGTCGCGTGGTCTGGATATCAAGGGCGTTGAGACGGTCATCAACTACGAA
GCGCCGCAGAGCCATGAGATCTACCTGCATCGTGTTGGTCGTACTGCGCG
TGCGGGCCGCTCCGGTCGGGCCTGCACCATTGCCGCCGAGCCTGACCGCA
AGGTGGTCAAGGCGGCGGTGAAGGCGGGCAAGTCGCAAGGAGCCAAGATT
GCCAGCCGTGTGATTGAACCGGCGATGGCAGATGCGAAGCGGTCGTTCCA
GGAATTCAACCTCTCTCGTCCCATCCTTCGTGGTCTCGCCGGAGTCAACT
TCTCGAACCCTACACCCATTCAGCGCAAGACGATCCCCGTGGCTCTCCTG
GGCAAGGATATTGTCGGTAGTGCCGTTACTGGTTCCGGAAAGACTGCCGC
CTTCGTTGTCCCGATTCTCGAACGTCTGCTGTTCCGGCCGCGCAAGGTCC
CGACGAGTCGTGTTGCCATTCTCATGCCCACCCGTGAATTGGCGGTGCAG
TGCTACAATGTCGCTACAAAGCTGGCCACATACACGGACATCACCTTCTG
TCAGCTGGTCGGTGGTTTCAGTCTTCGCGAGCAGGAGAACATCTTGAAGA
AGCGTCCCGATGTGATCATCGCCACCCCCGGTCGTTTCATTGATCACATG
CGCAACTCGGCCAGCTTCACCGTTGATACTCTGGAAATCCTGGTTCTGGA
TGAAGCCGATCGCATGCTCGAGGACGGTTTCGCCGACGAGTTGAACGAGA
TTCTCACTACGATCCCCAAGTCGCGCCAGACCATGCTTTTCTCGGCTACG
ATGACGGACACTGTCGACAAGCTCATTCGCGTCGGTCTCAACCGCCCCGT
GCGCTTGATGGTCGACGCCAAGAAGAACACGGCCGTGACACTGGTGCAGG
AATTCGTGCGTCTGCGCCCCGGACGTGAGGACAAGCGACTAGGCTACCTT
CTCTACCTCTGCAAAGAGATCTACACCGGTCGGGTGATTGTCTTCTTCCG
ACAGAAGAAGGAGGCGCACCGGGTGCGTATCATCTTCGGACTGCTGGGCT
TGAAGGCTGCCGAGCTCCACGGTAGCATGAGCCAAGAACAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_10000171.2 |
| Note | SMCOG1122:ATP-dependent RNA helicase |
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR014014 |
| DBxref | InterPro:IPR000629 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR014001 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF00270 |
| Product | nucleolar DEAD-box protein required for synthesis of 60S ribosomal subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000017.1 | supercontig | NKJJ01000017.1:499309..500959 - |
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