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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2895384..2897152+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008743-T1 ID=KJC3_008743-T1|Name=KJC3_008743-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1769bp|location=Sequence derived from alignment at ch6:2895384..2897152+ (Aspergillus niger KJC3) AGCAATCATCAATCAATACCAACCATATCATTTCAATTTCCCTTCCTTCT
CATCGTACAGCATACACTTCACTCCATCATGTCCACCTACACCATCGTCA
GCGGCGACTCATTATGGAAAATCTCCCAAGACCACGGCGTCACCCTCGAC
GCCCTCCGAGCAGCCAACCCGCAGATCACCAACCCAGATCTTATCTATCC
GGGGCAAGAGCTGAATATTCCGGGGCCTGATCAGCCTCCTCCGGAAAGTC
GCAGCATCCCGGGTGATGTCCCAGGCCAAGCTCCTCCTCCTTCTTCTGCT
CCTCCTGTTCACCTTGCCGTCTGTCCCCCAGGGCCGCCGGTTGTTCCAGG
CGCTGCTGGAGCACCGCCCGCCATTCCCCCGCGTCCTCCGATGGCCCGTC
CGCCGCCTCCGTGGATCAATGCCGGGAGACCGGGGTATAAGACTGTTGGG
TACTTTACTAACTGGGTATGTTATAGCTTTAACTATTTGTATAAATCATT
TGACTAATAAACGTGACAGGGAGTCTACGGCCGCAATTACCAACCTCAAG
ATATTCCTGCGGAGTATATCACTCACATTCTCTGTACGTTCTATCCCAAT
TCTATCATAGCGCTAGTCTAACATCAATAGATTCCTTCGCCAACATCCGC
CCCACCGGCGAAGTGTACGTTTCACTCTTCCCCTCCAAACCAATCCACCA
AGCTAACATTTAGAAATGTAGCTTCCTCACCGACACCTACTCCGACCTCG
AAAAGCACTACCCAACCGATAGCTGGTCCGAGCCCGGTACCAACGCCTAC
GGATGCATCAAGCAACTCTACCTCCTAAAACAACAACACCGCCACCTGAA
AACCCTCCTTTCCATCGGCGGCTGGACCTACAGTCCCAACTTCGCCGCGC
CAGCATCCACGCCCCGCGGTCGCGAAACCTTCGCCCGCAGCGCCGTGCAC
CTCCTCGCGGACCTGGGCTTCGACGGCATCGACATCGACTGGGAGTATCC
AGCCGATTCATCGCAAGCGATGGACTTTGTGCACCTTTTGCGGGATGTGA
GGCGCGTGCTGGACGAGTACTCCGCCACCCATCTTGGCGGAAAGAGACTG
TTATTGACGATCGCGGCGCCGTGCGGGCCGGACAATATCCAGAAACTGCG
GATAGGCGATATGGATCCGTATCTTGATTTCTGGAATCTGATGTGTTATG
ATTTCAGCGGGAGCTGGGATAAGTGTTCCGGCCATATGGCGAATGTGTTC
CATTCGGGGAGGGGGGAGATTACGCCGTTCTGTGCAGATGGGGCGGTGAC
GATGTATTTGAGGGGTGGGGTGAGGGATGCGAGGAAGCTTATATTTGGGT
TGCCGTTGTATGGAAGGGCTTTTGAGGGGACGGATGGGCCTGGGAGCGGG
TTCCAGGGTGTTGGGGAGGGGAGTTGGGAGAATGGGGTGTGGGATTATAA
GGCTTTGCCGTTGCAGGGGAGTCAGGAGGTGGTGGATGGGCGGTTGATGG
CCAGTTGGTGTTTTGATCCGGCGAAGAGGAAGATGGTTAGTTATGATACG
CCGGAGGTGGCCGGGATGAAGACGGAGTATATTGCCGGGAGGAGGTTGGG
AGGAGCTATGTGGTGGGAGTTGAGTGGGGATCATCATGTTTCGCATGAGA
GGAGCTTGGTTAAGGGGACTGCGGAGAGGTTGGGTAGGTTGGGTGGGTTG
GACGGTACGGAGAATACGTTGTATTATCCGCTGAGTCGCTTTGAGAATTT
GAGGAGGGGGTGTGTTTGA back to topCoding sequence (CDS) from alignment at ch6:2895384..2897152+ >KJC3_008743-T1 ID=KJC3_008743-T1|Name=KJC3_008743-T1|organism=Aspergillus niger KJC3|type=CDS|length=6132bp|location=Sequence derived from alignment at ch6:2895384..2897152+ (Aspergillus niger KJC3) ATGTCCACCTACACCATCGTCAGCGGCGACTCATTATGGAAAATCTCCCA AGACCACGGCGTCACCCTCGACGCCCTCCGAGCAGCCAACCCGCAGATCA CCAACCCAGATCTTATCTATCCGGGGCAAGAGCTGAATATTCCGGGGCCT GATCAGCCTCCTCCGGAAAGTCGCAGCATCCCGGGTGATGTCCCAGGCCA AGCTCCTCCTCCTTCTTCTGCTCCTCCTGTTCACCTTGCCGTCTGTCCCC CAGGGCCGCCGGTTGTTCCAGGCGCTGCTGGAGCACCGCCCGCCATTCCC CCGCGTCCTCCGATGGCCCGTCCGCCGCCTCCGTGGATCAATGCCGGGAG ACCGGGGTATAAGACTGTTGGGTACTTTACTAACTGGGGAGTCTACGGCC GCAATTACCAACCTCAAGATATTCCTGCGGAGTATATCACTCACATTCTC TATTCCTTCGCCAACATCCGCCCCACCGGCGAAGTCTTCCTCACCGACAC CTACTCCGACCTCGAAAAGCACTACCCAACCGATAGCTGGTCCGAGCCCG GTACCAACGCCTACGGATGCATCAAGCAACTCTACCTCCTAAAACAACAA CACCGCCACCTGAAAACCCTCCTTTCCATCGGCGGCTGGACCTACAGTCC CAACTTCGCCGCGCCAGCATCCACGCCCCGCGGTCGCGAAACCTTCGCCC GCAGCGCCGTGCACCTCCTCGCGGACCTGGGCTTCGACGGCATCGACATC GACTGGGAGTATCCAGCCGATTCATCGCAAGCGATGGACTTTGTGCACCT TTTGCGGGATGTGAGGCGCGTGCTGGACGAGTACTCCGCCACCCATCTTG GCGGAAAGAGACTGTTATTGACGATCGCGGCGCCGTGCGGGCCGGACAAT ATCCAGAAACTGCGGATAGGCGATATGGATCCGTATCTTGATTTCTGGAA TCTGATGTGTTATGATTTCAGCGGGAGCTGGGATAAGTGTTCCGGCCATA TGGCGAATGTGTTCCATTCGGGGAGGGGGGAGATTACGCCGTTCTGTGCA GATGGGGCGGTGACGATGTATTTGAGGGGTGGGGTGAGGGATGCGAGGAA GCTTATATTTGGGTTGCCGTTGTATGGAAGGGCTTTTGAGGGGACGGATG GGCCTGGGAGCGGGTTCCAGGGTGTTGGGGAGGGGAGTTGGGAGAATGGG GTGTGGGATTATAAGGCTTTGCCGTTGCAGGGGAGTCAGGAGGTGGTGGA TGGGCGGTTGATGGCCAGTTGGTGTTTTGATCCGGCGAAGAGGAAGATGG TTAGTTATGATACGCCGGAGGTGGCCGGGATGAAGACGGAGTATATTGCC GGGAGGAGGTTGGGAGGAGCTATGTGGTGGGAGTTGAGTGGGGATCATCA TGTTTCGCATGAGAGGAGCTTGGTTAAGGGGACTGCGGAGAGGTTGGGTA GGTTGGGTGGGTTGGACGGTACGGAGAATACGTTGTATTATCCGCTGAGT CGCTTTGAGAATTTGAGGAGGGGGTGTGTTTGAATGTCCACCTACACCAT CGTCAGCGGCGACTCATTATGGAAAATCTCCCAAGACCACGGCGTCACCC TCGACGCCCTCCGAGCAGCCAACCCGCAGATCACCAACCCAGATCTTATC TATCCGGGGCAAGAGCTGAATATTCCGGGGCCTGATCAGCCTCCTCCGGA AAGTCGCAGCATCCCGGGTGATGTCCCAGGCCAAGCTCCTCCTCCTTCTT CTGCTCCTCCTGTTCACCTTGCCGTCTGTCCCCCAGGGCCGCCGGTTGTT CCAGGCGCTGCTGGAGCACCGCCCGCCATTCCCCCGCGTCCTCCGATGGC CCGTCCGCCGCCTCCGTGGATCAATGCCGGGAGACCGGGGTATAAGACTG TTGGGTACTTTACTAACTGGGGAGTCTACGGCCGCAATTACCAACCTCAA GATATTCCTGCGGAGTATATCACTCACATTCTCTATTCCTTCGCCAACAT CCGCCCCACCGGCGAAGTCTTCCTCACCGACACCTACTCCGACCTCGAAA AGCACTACCCAACCGATAGCTGGTCCGAGCCCGGTACCAACGCCTACGGA TGCATCAAGCAACTCTACCTCCTAAAACAACAACACCGCCACCTGAAAAC CCTCCTTTCCATCGGCGGCTGGACCTACAGTCCCAACTTCGCCGCGCCAG CATCCACGCCCCGCGGTCGCGAAACCTTCGCCCGCAGCGCCGTGCACCTC CTCGCGGACCTGGGCTTCGACGGCATCGACATCGACTGGGAGTATCCAGC CGATTCATCGCAAGCGATGGACTTTGTGCACCTTTTGCGGGATGTGAGGC GCGTGCTGGACGAGTACTCCGCCACCCATCTTGGCGGAAAGAGACTGTTA TTGACGATCGCGGCGCCGTGCGGGCCGGACAATATCCAGAAACTGCGGAT AGGCGATATGGATCCGTATCTTGATTTCTGGAATCTGATGTGTTATGATT TCAGCGGGAGCTGGGATAAGTGTTCCGGCCATATGGCGAATGTGTTCCAT TCGGGGAGGGGGGAGATTACGCCGTTCTGTGCAGATGGGGCGGTGACGAT GTATTTGAGGGGTGGGGTGAGGGATGCGAGGAAGCTTATATTTGGGTTGC CGTTGTATGGAAGGGCTTTTGAGGGGACGGATGGGCCTGGGAGCGGGTTC CAGGGTGTTGGGGAGGGGAGTTGGGAGAATGGGGTGTGGGATTATAAGGC TTTGCCGTTGCAGGGGAGTCAGGAGGTGGTGGATGGGCGGTTGATGGCCA GTTGGTGTTTTGATCCGGCGAAGAGGAAGATGGTTAGTTATGATACGCCG GAGGTGGCCGGGATGAAGACGGAGTATATTGCCGGGAGGAGGTTGGGAGG AGCTATGTGGTGGGAGTTGAGTGGGGATCATCATGTTTCGCATGAGAGGA GCTTGGTTAAGGGGACTGCGGAGAGGTTGGGTAGGTTGGGTGGGTTGGAC GGTACGGAGAATACGTTGTATTATCCGCTGAGTCGCTTTGAGAATTTGAG GAGGGGGTGTGTTTGAATGTCCACCTACACCATCGTCAGCGGCGACTCAT TATGGAAAATCTCCCAAGACCACGGCGTCACCCTCGACGCCCTCCGAGCA GCCAACCCGCAGATCACCAACCCAGATCTTATCTATCCGGGGCAAGAGCT GAATATTCCGGGGCCTGATCAGCCTCCTCCGGAAAGTCGCAGCATCCCGG GTGATGTCCCAGGCCAAGCTCCTCCTCCTTCTTCTGCTCCTCCTGTTCAC CTTGCCGTCTGTCCCCCAGGGCCGCCGGTTGTTCCAGGCGCTGCTGGAGC ACCGCCCGCCATTCCCCCGCGTCCTCCGATGGCCCGTCCGCCGCCTCCGT GGATCAATGCCGGGAGACCGGGGTATAAGACTGTTGGGTACTTTACTAAC TGGGGAGTCTACGGCCGCAATTACCAACCTCAAGATATTCCTGCGGAGTA TATCACTCACATTCTCTATTCCTTCGCCAACATCCGCCCCACCGGCGAAG TCTTCCTCACCGACACCTACTCCGACCTCGAAAAGCACTACCCAACCGAT AGCTGGTCCGAGCCCGGTACCAACGCCTACGGATGCATCAAGCAACTCTA CCTCCTAAAACAACAACACCGCCACCTGAAAACCCTCCTTTCCATCGGCG GCTGGACCTACAGTCCCAACTTCGCCGCGCCAGCATCCACGCCCCGCGGT CGCGAAACCTTCGCCCGCAGCGCCGTGCACCTCCTCGCGGACCTGGGCTT CGACGGCATCGACATCGACTGGGAGTATCCAGCCGATTCATCGCAAGCGA TGGACTTTGTGCACCTTTTGCGGGATGTGAGGCGCGTGCTGGACGAGTAC TCCGCCACCCATCTTGGCGGAAAGAGACTGTTATTGACGATCGCGGCGCC GTGCGGGCCGGACAATATCCAGAAACTGCGGATAGGCGATATGGATCCGT ATCTTGATTTCTGGAATCTGATGTGTTATGATTTCAGCGGGAGCTGGGAT AAGTGTTCCGGCCATATGGCGAATGTGTTCCATTCGGGGAGGGGGGAGAT TACGCCGTTCTGTGCAGATGGGGCGGTGACGATGTATTTGAGGGGTGGGG TGAGGGATGCGAGGAAGCTTATATTTGGGTTGCCGTTGTATGGAAGGGCT TTTGAGGGGACGGATGGGCCTGGGAGCGGGTTCCAGGGTGTTGGGGAGGG GAGTTGGGAGAATGGGGTGTGGGATTATAAGGCTTTGCCGTTGCAGGGGA GTCAGGAGGTGGTGGATGGGCGGTTGATGGCCAGTTGGTGTTTTGATCCG GCGAAGAGGAAGATGGTTAGTTATGATACGCCGGAGGTGGCCGGGATGAA GACGGAGTATATTGCCGGGAGGAGGTTGGGAGGAGCTATGTGGTGGGAGT TGAGTGGGGATCATCATGTTTCGCATGAGAGGAGCTTGGTTAAGGGGACT GCGGAGAGGTTGGGTAGGTTGGGTGGGTTGGACGGTACGGAGAATACGTT GTATTATCCGCTGAGTCGCTTTGAGAATTTGAGGAGGGGGTGTGTTTGAA TGTCCACCTACACCATCGTCAGCGGCGACTCATTATGGAAAATCTCCCAA GACCACGGCGTCACCCTCGACGCCCTCCGAGCAGCCAACCCGCAGATCAC CAACCCAGATCTTATCTATCCGGGGCAAGAGCTGAATATTCCGGGGCCTG ATCAGCCTCCTCCGGAAAGTCGCAGCATCCCGGGTGATGTCCCAGGCCAA GCTCCTCCTCCTTCTTCTGCTCCTCCTGTTCACCTTGCCGTCTGTCCCCC AGGGCCGCCGGTTGTTCCAGGCGCTGCTGGAGCACCGCCCGCCATTCCCC CGCGTCCTCCGATGGCCCGTCCGCCGCCTCCGTGGATCAATGCCGGGAGA CCGGGGTATAAGACTGTTGGGTACTTTACTAACTGGGGAGTCTACGGCCG CAATTACCAACCTCAAGATATTCCTGCGGAGTATATCACTCACATTCTCT ATTCCTTCGCCAACATCCGCCCCACCGGCGAAGTCTTCCTCACCGACACC TACTCCGACCTCGAAAAGCACTACCCAACCGATAGCTGGTCCGAGCCCGG TACCAACGCCTACGGATGCATCAAGCAACTCTACCTCCTAAAACAACAAC ACCGCCACCTGAAAACCCTCCTTTCCATCGGCGGCTGGACCTACAGTCCC AACTTCGCCGCGCCAGCATCCACGCCCCGCGGTCGCGAAACCTTCGCCCG CAGCGCCGTGCACCTCCTCGCGGACCTGGGCTTCGACGGCATCGACATCG ACTGGGAGTATCCAGCCGATTCATCGCAAGCGATGGACTTTGTGCACCTT TTGCGGGATGTGAGGCGCGTGCTGGACGAGTACTCCGCCACCCATCTTGG CGGAAAGAGACTGTTATTGACGATCGCGGCGCCGTGCGGGCCGGACAATA TCCAGAAACTGCGGATAGGCGATATGGATCCGTATCTTGATTTCTGGAAT CTGATGTGTTATGATTTCAGCGGGAGCTGGGATAAGTGTTCCGGCCATAT GGCGAATGTGTTCCATTCGGGGAGGGGGGAGATTACGCCGTTCTGTGCAG ATGGGGCGGTGACGATGTATTTGAGGGGTGGGGTGAGGGATGCGAGGAAG CTTATATTTGGGTTGCCGTTGTATGGAAGGGCTTTTGAGGGGACGGATGG GCCTGGGAGCGGGTTCCAGGGTGTTGGGGAGGGGAGTTGGGAGAATGGGG TGTGGGATTATAAGGCTTTGCCGTTGCAGGGGAGTCAGGAGGTGGTGGAT GGGCGGTTGATGGCCAGTTGGTGTTTTGATCCGGCGAAGAGGAAGATGGT TAGTTATGATACGCCGGAGGTGGCCGGGATGAAGACGGAGTATATTGCCG GGAGGAGGTTGGGAGGAGCTATGTGGTGGGAGTTGAGTGGGGATCATCAT GTTTCGCATGAGAGGAGCTTGGTTAAGGGGACTGCGGAGAGGTTGGGTAG GTTGGGTGGGTTGGACGGTACGGAGAATACGTTGTATTATCCGCTGAGTC GCTTTGAGAATTTGAGGAGGGGGTGTGTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0008061 | chitin binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008743-T1.utr5p1 | KJC3_008743-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
Property Name | Value |
Note | CAZy:GH18 |
DBxref | InterPro:IPR017853 |
DBxref | InterPro:IPR001579 |
DBxref | InterPro:IPR001223 |
DBxref | InterPro:IPR036779 |
DBxref | InterPro:IPR029070 |
DBxref | InterPro:IPR011583 |
DBxref | InterPro:IPR018392 |
DBxref | PFAM:PF01476 |
DBxref | PFAM:PF00704 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:2895384..2897152 + |
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