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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1892481..1893929+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011872-T1 ID=KJC3_011872-T1|Name=KJC3_011872-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1449bp|location=Sequence derived from alignment at ch8:1892481..1893929+ (Aspergillus niger KJC3)
CCCAAAGGGACTGTAGGATAGGGCTTAGGGCAGTTGAGGGTGGCAGGCAT
CCATCGGCGGGCGTCCATAAGCTTTCCCCGCGGAGCTCCATCGCGCCGGA
GGAGCAACTGATAGTCATACGTAGCTTAATTTCCCATTTCCGTTTCCATC
ACCGTCGCTGTCTGCTGCCCGCCTACTACTATACTTCTCGCCAATCACAC
TCCCAAGATCACGCCCACTTGGAATGGGCCTTGAGTACTTGCTTGCTTGC
TTCTTCTAGGATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCA
TCCCCGACAGAGCCCCCGTACGCATCCCCTCATCCCTTATCGCATCCTCG
CAGGTTGACCTGTCTGCTGACTTGTACTCGCTAGGACCTCCCAGCCAAGG
TGCGCACTATTGCTCCATCCCTCTTGATCCTCCTCTCTGTCTTTCAATCC
CCCGTTCTCGATTGACCCGCGCACAGTTCCGGAAACTCCTGACGCCAGGC
AAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTT
CGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACT
TCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGG
AGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGA
CGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGC
TATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTC
TTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCC
GGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATGTAAGTCGCG
CAACTCCACGGGGTTCGCTGCAAGACTCGGTACGTGCTCTATGCTAACAC
AGGATTATAGATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGA
AGACGGACGCCGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTAC
CGCAAGAACAATATCCCTTCTTCATGAGTTGACGCTTTATAATTTCTTAT
TGTACATACATAGAACCAGGCACGATAATGATGTTCTTCTAACCTATGCG
GCTGTTGTTCATGTTGAATTAGTTGATAGTGATGTACGGTTGCAATCTTT
TATCTGCCCTGAACATACCATGTCATGTATGGCAGTAACTAACATATGTC
ATGGTCTAACTGTGCAAGAAGATATCCTACCCAAGGAAATGATAGGTTCC
ATCGGCATTGATACTGAGGTCGCGGTAATTGCTATGGAGATTGACAGACC
TCGTTACTAGACAGTGGCTATTTTGGGATAACGCTGATGTCCCCGTACTA
TTAAATGAAGAATCAGATAGTTAAAAGTCTGCAAATCCTGAGAAATAAG back to topCoding sequence (CDS) from alignment at ch8:1892481..1893929+ >KJC3_011872-T1 ID=KJC3_011872-T1|Name=KJC3_011872-T1|organism=Aspergillus niger KJC3|type=CDS|length=2412bp|location=Sequence derived from alignment at ch8:1892481..1893929+ (Aspergillus niger KJC3)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAGGCAAGA
TCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAA
TTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGA
TGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTC
TCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCC
GATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATG
GGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTA
TCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAA
GGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGGCGATGT
CCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGGCTGAGA
CGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCTTCTTCA
TGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGA
CAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAGGCA
AGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTC
GAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTT
CGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGA
GTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGAC
GCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCT
ATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCT
TTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCG
GAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGGCGA
TGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGGCTG
AGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCTTCT
TCATGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCC
CGACAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAG
GCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACT
TTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGA
CTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACG
GGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGG
GACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACT
GCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGT
TCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGG
CCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGG
CGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGG
CTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCT
TCTTCATGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCAT
CCCCGACAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGC
CAGGCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGC
ACTTTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGG
CGACTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTC
ACGGGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCG
GGGGACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACAT
ACTGCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAA
GGTTCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTAC
TGGCCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCA
AGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACG
GGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATC
CCTTCTTCATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030904 | retromer complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042147 | retrograde transport, endosome to Golgi |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011872-T1.utr5p1 | KJC3_011872-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011872-T1.utr3p1 | KJC3_011872-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092640ZF |
| DBxref | InterPro:IPR028661 |
| DBxref | InterPro:IPR000979 |
| DBxref | InterPro:IPR029052 |
| DBxref | InterPro:IPR024654 |
| DBxref | PFAM:PF12850 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1892481..1893929 + |
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