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KJC3_011872-T1, KJC3_011872-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011872-T1
Unique NameKJC3_011872-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1892481..1893929+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011872-T1 ID=KJC3_011872-T1|Name=KJC3_011872-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1449bp|location=Sequence derived from alignment at ch8:1892481..1893929+ (Aspergillus niger KJC3)
CCCAAAGGGACTGTAGGATAGGGCTTAGGGCAGTTGAGGGTGGCAGGCAT
CCATCGGCGGGCGTCCATAAGCTTTCCCCGCGGAGCTCCATCGCGCCGGA
GGAGCAACTGATAGTCATACGTAGCTTAATTTCCCATTTCCGTTTCCATC
ACCGTCGCTGTCTGCTGCCCGCCTACTACTATACTTCTCGCCAATCACAC
TCCCAAGATCACGCCCACTTGGAATGGGCCTTGAGTACTTGCTTGCTTGC
TTCTTCTAGGATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCA
TCCCCGACAGAGCCCCCGTACGCATCCCCTCATCCCTTATCGCATCCTCG
CAGGTTGACCTGTCTGCTGACTTGTACTCGCTAGGACCTCCCAGCCAAGG
TGCGCACTATTGCTCCATCCCTCTTGATCCTCCTCTCTGTCTTTCAATCC
CCCGTTCTCGATTGACCCGCGCACAGTTCCGGAAACTCCTGACGCCAGGC
AAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTT
CGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACT
TCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGG
AGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGA
CGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGC
TATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTC
TTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCC
GGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATGTAAGTCGCG
CAACTCCACGGGGTTCGCTGCAAGACTCGGTACGTGCTCTATGCTAACAC
AGGATTATAGATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGA
AGACGGACGCCGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTAC
CGCAAGAACAATATCCCTTCTTCATGAGTTGACGCTTTATAATTTCTTAT
TGTACATACATAGAACCAGGCACGATAATGATGTTCTTCTAACCTATGCG
GCTGTTGTTCATGTTGAATTAGTTGATAGTGATGTACGGTTGCAATCTTT
TATCTGCCCTGAACATACCATGTCATGTATGGCAGTAACTAACATATGTC
ATGGTCTAACTGTGCAAGAAGATATCCTACCCAAGGAAATGATAGGTTCC
ATCGGCATTGATACTGAGGTCGCGGTAATTGCTATGGAGATTGACAGACC
TCGTTACTAGACAGTGGCTATTTTGGGATAACGCTGATGTCCCCGTACTA
TTAAATGAAGAATCAGATAGTTAAAAGTCTGCAAATCCTGAGAAATAAG
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Coding sequence (CDS) from alignment at ch8:1892481..1893929+

>KJC3_011872-T1 ID=KJC3_011872-T1|Name=KJC3_011872-T1|organism=Aspergillus niger KJC3|type=CDS|length=2412bp|location=Sequence derived from alignment at ch8:1892481..1893929+ (Aspergillus niger KJC3)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAGGCAAGA
TCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAA
TTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGA
TGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTC
TCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCC
GATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATG
GGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTA
TCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAA
GGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGGCGATGT
CCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGGCTGAGA
CGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCTTCTTCA
TGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGA
CAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAGGCA
AGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTC
GAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTT
CGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGA
GTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGAC
GCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCT
ATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCT
TTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCG
GAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGGCGA
TGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGGCTG
AGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCTTCT
TCATGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCC
CGACAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAG
GCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACT
TTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGA
CTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACG
GGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGG
GACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACT
GCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGT
TCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGG
CCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGG
CGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGG
CTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCT
TCTTCATGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCAT
CCCCGACAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGC
CAGGCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGC
ACTTTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGG
CGACTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTC
ACGGGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCG
GGGGACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACAT
ACTGCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAA
GGTTCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTAC
TGGCCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCA
AGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACG
GGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATC
CCTTCTTCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030904retromer complex
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011872KJC3_011872Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011872-T1KJC3_011872-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011872-T1.utr5p1KJC3_011872-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011872-T1.exon1KJC3_011872-T1.exon1Aspergillus niger KJC3exon
KJC3_011872-T1.exon2KJC3_011872-T1.exon2Aspergillus niger KJC3exon
KJC3_011872-T1.exon3KJC3_011872-T1.exon3Aspergillus niger KJC3exon
KJC3_011872-T1.exon4KJC3_011872-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011872-T1.cdsKJC3_011872-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011872-T1.utr3p1KJC3_011872-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092640ZF
DBxrefInterPro:IPR028661
DBxrefInterPro:IPR000979
DBxrefInterPro:IPR029052
DBxrefInterPro:IPR024654
DBxrefPFAM:PF12850
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1892481..1893929 +
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