You are here

Home

KJC3_012688-T1, KJC3_012688-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012688-T1
Unique NameKJC3_012688-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4295292..4296201-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012688-T1 ID=KJC3_012688-T1|Name=KJC3_012688-T1|organism=Aspergillus niger KJC3|type=mRNA|length=910bp|location=Sequence derived from alignment at ch8:4295292..4296201- (Aspergillus niger KJC3)
CCACCCTCTTCGCGCGTTGTCAAGGCGATTCCCCGAAGAGCGCTAGGAAC
TCGCGACAATGTAAGTGATGCACCTAATATCGGCCATTGATATCATATAG
GATAATGTAGCTAACCCCGAGCCAGGCTTATCCCCAAGGAAGACCGCAAG
AAGATCCACGAGTACCTCTTCCGCGGTATGTGAACACCTATGATCCACCG
GCCTTGTGTCTCCGAATTGTTGCGCGACGGTCGATCGATGGATGATGGAT
GAATCAGTCTTGCTGACGGTTGACTATAGAGGGTGTGCTCGTGGCCAAGA
AGGACTTCAACCTTCCCAAGCATGGCGACATTGACACCAAGAACCTCTAC
GTGATCAAGGCCTGCCAGTCCCTGACCTCCCGCGGCTACGTCAAGACCCA
GTTCTCCTGGCAGTACTACTACTACACCCTCACCCCCGAGGTATGCTCCA
CTGATGAAGATGAATGCGTAAGACGGATTGTCTGACTGGTTTTGATATAG
GGTCTTGACTACCTCCGTGAGTGGCTCCACCTCCCCGCTGAGGTTGTCCC
CGCCACCCACATCAAGCAGCAGCGTTCCCACGCTCCCCCTCGTGGCATGA
TGGGCGGTGAGGAGCGTGAGCGTCGTCCCCGTGCTCCTCGTGAGGGTGGC
TACCGCCGCCGCGAGCAGGACAAGGAGGGCGCCGCCCCCGGCGAGTTCGC
TCCCAGCTTCCGTGGTGGATTCGGCCGTGGCCGTGGTGCTCCCTCCTCCT
AAGGGGTGTCGCCTGCCGGTCTTCCAAGGGCTTAATGGGATTGTTGCCGG
TGTGGCTTGAATGACTTTGAAAGAAGTCGGGAAGCTATGCTGTGCACGTC
CTAAAAAGAAGTTATGCCAAGCTACTGTTTCACAGTTATGATATAGTTAG
GATTAATGGC
back to top

Coding sequence (CDS) from alignment at ch8:4295292..4296201-

>KJC3_012688-T1 ID=KJC3_012688-T1|Name=KJC3_012688-T1|organism=Aspergillus niger KJC3|type=CDS|length=1860bp|location=Sequence derived from alignment at ch8:4295292..4296201- (Aspergillus niger KJC3)
GGTCTTGACTACCTCCGTGAGTGGCTCCACCTCCCCGCTGAGGTTGTCCC
CGCCACCCACATCAAGCAGCAGCGTTCCCACGCTCCCCCTCGTGGCATGA
TGGGCGGTGAGGAGCGTGAGCGTCGTCCCCGTGCTCCTCGTGAGGGTGGC
TACCGCCGCCGCGAGCAGGACAAGGAGGGCGCCGCCCCCGGCGAGTTCGC
TCCCAGCTTCCGTGGTGGATTCGGCCGTGGCCGTGGTGCTCCCTCCTCCT
AAAGGGTGTGCTCGTGGCCAAGAAGGACTTCAACCTTCCCAAGCATGGCG
ACATTGACACCAAGAACCTCTACGTGATCAAGGCCTGCCAGTCCCTGACC
TCCCGCGGCTACGTCAAGACCCAGTTCTCCTGGCAGTACTACTACTACAC
CCTCACCCCCGAGGCTTATCCCCAAGGAAGACCGCAAGAAGATCCACGAG
TACCTCTTCCGCGATGGTCTTGACTACCTCCGTGAGTGGCTCCACCTCCC
CGCTGAGGTTGTCCCCGCCACCCACATCAAGCAGCAGCGTTCCCACGCTC
CCCCTCGTGGCATGATGGGCGGTGAGGAGCGTGAGCGTCGTCCCCGTGCT
CCTCGTGAGGGTGGCTACCGCCGCCGCGAGCAGGACAAGGAGGGCGCCGC
CCCCGGCGAGTTCGCTCCCAGCTTCCGTGGTGGATTCGGCCGTGGCCGTG
GTGCTCCCTCCTCCTAAAGGGTGTGCTCGTGGCCAAGAAGGACTTCAACC
TTCCCAAGCATGGCGACATTGACACCAAGAACCTCTACGTGATCAAGGCC
TGCCAGTCCCTGACCTCCCGCGGCTACGTCAAGACCCAGTTCTCCTGGCA
GTACTACTACTACACCCTCACCCCCGAGGCTTATCCCCAAGGAAGACCGC
AAGAAGATCCACGAGTACCTCTTCCGCGATGGTCTTGACTACCTCCGTGA
GTGGCTCCACCTCCCCGCTGAGGTTGTCCCCGCCACCCACATCAAGCAGC
AGCGTTCCCACGCTCCCCCTCGTGGCATGATGGGCGGTGAGGAGCGTGAG
CGTCGTCCCCGTGCTCCTCGTGAGGGTGGCTACCGCCGCCGCGAGCAGGA
CAAGGAGGGCGCCGCCCCCGGCGAGTTCGCTCCCAGCTTCCGTGGTGGAT
TCGGCCGTGGCCGTGGTGCTCCCTCCTCCTAAAGGGTGTGCTCGTGGCCA
AGAAGGACTTCAACCTTCCCAAGCATGGCGACATTGACACCAAGAACCTC
TACGTGATCAAGGCCTGCCAGTCCCTGACCTCCCGCGGCTACGTCAAGAC
CCAGTTCTCCTGGCAGTACTACTACTACACCCTCACCCCCGAGGCTTATC
CCCAAGGAAGACCGCAAGAAGATCCACGAGTACCTCTTCCGCGATGGTCT
TGACTACCTCCGTGAGTGGCTCCACCTCCCCGCTGAGGTTGTCCCCGCCA
CCCACATCAAGCAGCAGCGTTCCCACGCTCCCCCTCGTGGCATGATGGGC
GGTGAGGAGCGTGAGCGTCGTCCCCGTGCTCCTCGTGAGGGTGGCTACCG
CCGCCGCGAGCAGGACAAGGAGGGCGCCGCCCCCGGCGAGTTCGCTCCCA
GCTTCCGTGGTGGATTCGGCCGTGGCCGTGGTGCTCCCTCCTCCTAAAGG
GTGTGCTCGTGGCCAAGAAGGACTTCAACCTTCCCAAGCATGGCGACATT
GACACCAAGAACCTCTACGTGATCAAGGCCTGCCAGTCCCTGACCTCCCG
CGGCTACGTCAAGACCCAGTTCTCCTGGCAGTACTACTACTACACCCTCA
CCCCCGAGGCTTATCCCCAAGGAAGACCGCAAGAAGATCCACGAGTACCT
CTTCCGCGAT
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012688KJC3_012688Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012688-T1KJC3_012688-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012688-T1.cdsKJC3_012688-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012688-T1.utr3p1KJC3_012688-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012688-T1.exon4KJC3_012688-T1.exon4Aspergillus niger KJC3exon
KJC3_012688-T1.exon3KJC3_012688-T1.exon3Aspergillus niger KJC3exon
KJC3_012688-T1.exon2KJC3_012688-T1.exon2Aspergillus niger KJC3exon
KJC3_012688-T1.exon1KJC3_012688-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012688-T1.utr5p1KJC3_012688-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR005326
DBxrefPFAM:PF03501
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4295292..4296201 -
Powered by Drupal